IslandPath Analysis: Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.59   STD DEV: 6.97
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, complete genome - 1..4858887
5592 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.99	0	424..2886	+	820	161612314	-	SPAB_00002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2	 58.17	+1	2888..3817	+	309	161612315	-	SPAB_00003	-	homoserine kinase
3	 56.88	0	3821..5107	+	428	161612316	-	SPAB_00004	-	threonine synthase
4	 50.39	0	5201..5974	-	257	161612317	-	SPAB_00005	-	hypothetical protein
5	 50.48	0	5968..6072	-	34	161612318	-	SPAB_00006	-	hypothetical protein
6	 55.42	0	6053..7510	-	485	161612319	-	SPAB_00007	-	hypothetical protein
7	 54.09	0	7752..8705	+	317	161612320	-	SPAB_00008	-	transaldolase B
8	 55.84	0	8816..9406	+	196	161612321	-	SPAB_00009	-	molybdenum cofactor biosynthesis protein
9	 54.32	0	9463..10029	-	188	161612322	-	SPAB_00010	-	hypothetical protein
10	 53.92	0	10179..10892	-	237	161612323	-	SPAB_00011	-	hypothetical protein
11	 49.88	0	10928..11332	-	134	161612324	-	SPAB_00012	-	hypothetical protein
12	 30.95	-2	11387..11512	+	41	161612325	-	SPAB_00013	-	hypothetical protein
13	 52.43	0	11682..13598	+	638	161612326	-	SPAB_00014	-	molecular chaperone DnaK
14	 54.04	0	13684..14823	+	379	161612327	-	SPAB_00015	-	chaperone protein DnaJ
15	 27.19	-2	14935..15048	+	37	161612328	-	SPAB_00016	-	hypothetical protein
16	 40.72	-1	15104..16051	+	315	161612329	-	SPAB_00017	-	hypothetical protein
17	 39.93	-1	16220..16522	+	100	161612330	-	SPAB_00018	-	hypothetical protein
18	 51.12	0	16583..17116	-	177	161612331	-	SPAB_00019	-	hypothetical protein
19	 38.29	-1	17133..17576	-	147	161612332	-	SPAB_00020	-	hypothetical protein
20	 37.40	-1	17755..17877	+	40	161612333	-	SPAB_00021	-	hypothetical protein
21	 51.33	0	17957..20056	+	699	161612334	-	SPAB_00022	-	hypothetical protein
22	 54.65	0	20148..23144	+	998	161612335	-	SPAB_00023	-	hypothetical protein
23	 34.67	-2	23181..23330	+	49	161612336	-	SPAB_00024	-	hypothetical protein
24	 46.38	0	23425..24129	+	234	161612337	-	SPAB_00025	-	hypothetical protein
25	 29.52	-2	24184..24288	-	34	161612338	-	SPAB_00026	-	hypothetical protein
26	 36.04	-2	24406..24516	+	36	161612339	-	SPAB_00027	-	hypothetical protein
27	 51.75	0	24559..25101	+	180	161612340	-	SPAB_00028	-	fimbrial subunit
28	 51.65	0	25130..25888	+	252	161612341	-	SPAB_00029	-	hypothetical protein
29	 54.61	0	25893..28514	+	873	161612342	-	SPAB_00030	-	hypothetical protein
30	 50.50	0	28515..29522	+	335	161612343	-	SPAB_00031	-	hypothetical protein
31	 48.90	0	29523..30068	+	181	161612344	-	SPAB_00032	-	fimbrial subunit
32	 55.88	0	30084..30602	+	172	161612345	-	SPAB_00033	-	fimbrial subunit
33	 52.17	0	30693..30830	-	45	161612347	-	SPAB_00035	-	hypothetical protein
34	 56.17	0	30814..31299	+	161	161612346	-	SPAB_00034	-	hypothetical protein
35	 54.85	0	31362..32207	+	281	161612348	-	SPAB_00036	-	hypothetical protein
36	 41.32	-1	32246..32533	+	95	161612349	-	SPAB_00037	-	hypothetical protein
37	 39.78	-1	32633..33082	-	149	161612350	-	SPAB_00038	-	hypothetical protein
38	 28.68	-2	33242..33370	+	42	161612351	-	SPAB_00039	-	hypothetical protein
39	 45.83	0	33830..34021	+	63	161612352	-	SPAB_00040	-	hypothetical protein
40	 44.52	0	34095..34541	-	148	161612353	-	SPAB_00041	-	hypothetical protein
41	 48.33	0	34544..34663	-	39	161612354	-	SPAB_00042	-	hypothetical protein
42	 28.15	-2	34728..34862	-	44	161612355	-	SPAB_00043	-	hypothetical protein
43	 39.80	-1	35160..35762	+	200	161612356	-	SPAB_00044	-	hypothetical protein
44	 49.80	0	35783..37276	+	497	161612357	-	SPAB_00045	-	hypothetical protein
45	 48.96	0	37380..38576	+	398	161612358	-	SPAB_00046	-	hypothetical protein
46	 50.00	0	38594..39847	+	417	161612359	-	SPAB_00047	-	hypothetical protein
47	 56.47	0	40535..41701	+	388	161612360	-	SPAB_00049	-	pH-dependent sodium/proton antiporter
48	 50.89	0	41769..42662	+	297	161612361	-	SPAB_00050	-	transcriptional activator NhaR
49	 54.75	0	42717..44756	-	679	161612362	-	SPAB_00051	-	hypothetical protein
50	 49.15	0	44796..46211	-	471	161612363	-	SPAB_00052	-	hypothetical protein
51	 45.16	0	46625..46810	-	61	161612364	-	SPAB_00053	-	hypothetical protein
52	 44.22	0	47063..47209	+	48	161612365	-	SPAB_00054	-	hypothetical protein
53	 57.21	0	47268..48155	+	295	161612366	-	SPAB_00055	-	bifunctional riboflavin kinase/FMN adenylyltransferase
54	 54.58	0	48164..51034	+	956	161612367	-	SPAB_00056	-	isoleucyl-tRNA synthetase
55	 53.47	0	51088..51534	+	148	161612368	-	SPAB_00057	-	hypothetical protein
56	 54.22	0	51689..52138	+	149	161612369	-	SPAB_00058	-	hypothetical protein
57	 57.41	0	52141..53091	+	316	161612370	-	SPAB_00059	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
58	 44.03	0	53203..53361	-	52	161612371	-	SPAB_00060	-	hypothetical protein
59	 47.81	0	53534..54493	+	319	161612372	-	SPAB_00061	-	hypothetical protein
60	 56.46	0	54509..55429	+	306	161612373	-	SPAB_00062	-	ribonucleoside hydrolase RihC
61	 48.62	0	55451..56137	-	228	161612374	-	SPAB_00063	-	hypothetical protein
62	 47.74	0	56139..57797	-	552	161612375	-	SPAB_00064	-	hypothetical protein
63	 64.52	+1	57893..59194	-	433	161612376	-	SPAB_00065	-	hypothetical protein
64	 63.06	+1	59207..60979	-	590	161612377	-	SPAB_00066	-	pyruvate carboxylase subunit B
65	 59.17	+1	60995..61234	-	79	161612378	-	SPAB_00067	-	oxaloacetate decarboxylase subunit gamma
66	 49.59	0	61393..62733	-	446	161612379	-	SPAB_00068	-	hypothetical protein
67	 36.48	-2	62854..63012	-	52	161612381	-	SPAB_00070	-	hypothetical protein
68	 53.78	0	62990..64021	+	343	161612380	-	SPAB_00069	-	hypothetical protein
69	 56.46	0	64051..64344	+	97	161612382	-	SPAB_00071	-	citrate lyase subunit gamma
70	 55.40	0	64341..65210	+	289	161612383	-	SPAB_00072	-	hypothetical protein
71	 54.96	0	65221..66741	+	506	161612384	-	SPAB_00073	-	hypothetical protein
72	 55.98	0	66741..67292	+	183	161612385	-	SPAB_00074	-	hypothetical protein
73	 54.79	0	67270..68178	+	302	161612386	-	SPAB_00075	-	hypothetical protein
74	 47.01	0	68270..68386	-	38	161612388	-	SPAB_00077	-	hypothetical protein
75	 57.06	0	68358..69179	+	273	161612387	-	SPAB_00076	-	dihydrodipicolinate reductase
76	 48.78	0	69282..69404	-	40	161612389	-	SPAB_00078	-	hypothetical protein
77	 33.33	-2	69458..69598	+	46	161612390	-	SPAB_00079	-	hypothetical protein
78	 36.05	-2	69683..69829	-	48	161612391	-	SPAB_00080	-	hypothetical protein
79	 39.17	-1	69875..69994	+	39	161612392	-	SPAB_00081	-	hypothetical protein
80	 55.79	0	70043..71191	+	382	161612393	-	SPAB_00082	-	carbamoyl phosphate synthase small subunit
81	 58.92	+1	71210..74437	+	1075	161612394	-	SPAB_00083	-	carbamoyl phosphate synthase large subunit
82	 45.71	0	74711..75106	+	131	161612395	-	SPAB_00084	-	DNA-binding transcriptional activator CaiF
83	 55.95	0	75184..75780	-	198	161612396	-	SPAB_00085	-	carnitine operon protein CaiE
84	 56.62	0	75890..76675	-	261	161612397	-	SPAB_00086	-	carnitinyl-CoA dehydratase
85	 51.22	0	76729..78282	-	517	161612398	-	SPAB_00087	-	putative crotonobetaine/carnitine-CoA ligase
86	 53.48	0	78345..79565	-	406	161612399	-	SPAB_00088	-	crotonobetainyl-CoA:carnitine CoA-transferase
87	 52.90	0	79562..79699	-	45	161612400	-	SPAB_00089	-	hypothetical protein
88	 52.14	0	79674..80816	-	380	161612401	-	SPAB_00090	-	crotonobetainyl-CoA dehydrogenase
89	 53.75	0	80851..82368	-	505	161612402	-	SPAB_00091	-	L-carnitine/gamma-butyrobetaine antiporter
90	 35.24	-2	82427..82531	-	34	161612404	-	SPAB_00093	-	hypothetical protein
91	 25.64	-2	82510..82626	+	38	161612403	-	SPAB_00092	-	hypothetical protein
92	 52.01	0	82849..83619	+	256	161612405	-	SPAB_00094	-	putative electron transfer flavoprotein FixA
93	 58.39	+1	83635..84576	+	313	161612406	-	SPAB_00095	-	putative electron transfer flavoprotein FixB
94	 55.63	0	84626..85912	+	428	161612407	-	SPAB_00096	-	putative oxidoreductase FixC
95	 54.51	0	85909..86196	+	95	161612408	-	SPAB_00097	-	hypothetical protein
96	 54.04	0	86259..87683	+	474	161612409	-	SPAB_00098	-	hypothetical protein
97	 48.92	0	87772..88002	+	76	161612410	-	SPAB_00099	-	hypothetical protein
98	 51.85	0	88043..88177	-	44	161612411	-	SPAB_00100	-	hypothetical protein
99	 47.04	0	88288..88710	+	140	161612412	-	SPAB_00101	-	hypothetical protein
100	 49.36	0	88714..88869	-	51	161612413	-	SPAB_00102	-	hypothetical protein
50.59	MEAN

6.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.