IslandPath Analysis: Alcanivorax borkumensis SK2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.83   STD DEV: 3.73
Alcanivorax borkumensis SK2, complete genome - 1..3120143
2755 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.93	0	1..1425	+	474	110832862	dnaA	ABO_0001	-	chromosomal replication initiator protein DnaA
2	 54.68	0	1478..2578	+	366	110832863	dnaN	ABO_0002	-	DNA polymerase III, beta subunit
3	 54.15	0	2777..3775	+	332	110832864	recF	ABO_0003	-	DNA replication and repair protein RecF
4	 51.78	0	3785..6202	+	805	110832865	gyrB	ABO_0004	-	DNA gyrase, subunit B
5	 47.62	-1	6297..6653	-	118	110832866	hns	ABO_0005	-	DNA-binding protein H-NS
6	 51.30	0	6806..7534	-	242	110832867	plsC	ABO_0006	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
7	 53.73	0	7531..8079	-	182	110832868	-	ABO_0007	-	histidinol-phosphatase, putatitve
8	 57.45	0	8198..10270	-	690	110832869	glyS	ABO_0008	-	glycyl-tRNA synthetase
9	 56.62	0	10270..11274	-	334	110832870	glyQ	ABO_0009	-	glycyl-tRNA synthetase subunit alpha
10	 53.37	0	11436..12014	+	192	110832871	tag	ABO_0010	-	DNA-3-methyladenine glycosidase I
11	 53.93	0	12163..12939	-	258	110832872	-	ABO_0011	-	hypothetical protein
12	 60.19	+1	13454..14797	+	447	110832873	-	ABO_0012	-	hypothetical protein
13	 59.65	+1	14888..16369	+	493	110832874	-	ABO_0013	-	hypothetical protein
14	 55.23	0	16498..17004	+	168	110832875	-	ABO_0014	-	MarR family transcriptional regulator
15	 59.36	+1	17015..19123	+	702	110832876	-	ABO_0015	-	hypothetical protein
16	 56.72	0	19113..19313	+	66	110832877	-	ABO_0016	-	hypothetical protein
17	 61.11	+1	19327..20316	+	329	110832878	-	ABO_0017	-	HlyD family secretion protein
18	 53.31	0	20469..21194	+	241	110832879	-	ABO_0018	-	hypothetical protein
19	 52.94	0	21211..22128	-	305	110832880	mmsR	ABO_0019	-	transcriptional regulator MmsR
20	 56.40	0	22278..23777	+	499	110832881	mmsA	ABO_0020	-	methylmalonate semialdehyde dehydrogenase (acylating)
21	 53.39	0	23919..25070	+	383	110832882	acdA	ABO_0021	-	acyl-CoA dehydrogenase
22	 53.65	0	25190..26080	+	296	110832883	mmsB	ABO_0022	-	3-hydroxyisobutyrate dehydrogenase
23	 50.05	-1	26119..27051	-	310	110832884	-	ABO_0023	-	hypothetical protein
24	 49.72	-1	27502..27678	+	58	110832885	-	ABO_0024	-	hypothetical protein
25	 52.03	0	27828..28688	-	286	110832886	-	ABO_0025	-	pirin family protein
26	 52.64	0	28756..29760	-	334	110832887	-	ABO_0026	-	glutathione S-transferase domain-containing protein
27	 51.42	0	29799..30395	-	198	110832888	acpD	ABO_0027	-	acyl carrier protein phosphodiesterase
28	 58.36	0	30525..31463	+	312	110832889	-	ABO_0028	-	LysR family transcriptional regulator
29	 52.27	0	31494..32021	+	175	110832890	-	ABO_0029	-	hypothetical protein
30	 60.73	+1	32005..33318	-	437	110832891	-	ABO_0030	-	sensor histidine kinase
31	 57.47	0	33315..33977	-	220	110832893	ygiX	ABO_0031	-	transcriptional regulatory protein qseb
32	 58.14	0	33972..34898	+	308	110832892	-	ABO_0032	-	hypothetical protein
33	 56.47	0	34895..35443	+	182	110832894	dsbG	ABO_0033	-	thiol:disulfide interchange protein DsbG
34	 63.44	+2	35544..36875	-	443	110832895	pyrC-2	ABO_0034	-	dihydroorotase, multifunctional complex type
35	 57.59	0	36823..37836	-	337	110832896	pyrB	ABO_0035	-	aspartate carbamoyltransferase catalytic subunit
36	 53.73	0	37839..38387	-	182	110832897	pyrR	ABO_0036	-	transcriptional regulator PyrR
37	 54.21	0	38616..39209	+	197	110832898	-	ABO_0037	-	putative cytochrome
38	 50.42	-1	39228..39824	+	198	110832899	-	ABO_0038	-	hypothetical protein
39	 53.55	0	39944..40759	-	271	110832900	-	ABO_0039	-	hypothetical protein
40	 53.02	0	40889..41335	+	148	110832901	-	ABO_0040	-	hypothetical protein
41	 53.59	0	41477..41950	+	157	110832902	-	ABO_0041	-	hypothetical protein
42	 57.63	0	42108..43025	-	305	110832903	-	ABO_0042	-	phosphotransferase family protein
43	 58.02	0	43290..44318	+	342	110832904	estA	ABO_0043	-	lipase/esterase
44	 54.85	0	44641..45114	-	157	110832905	-	ABO_0044	-	AhpC/TSA family protein
45	 56.15	0	45377..47296	-	639	110832906	-	ABO_0045	-	hypothetical protein
46	 56.18	0	47966..50062	-	698	110832907	-	ABO_0046	-	von Willebrand factor type A domain-containing protein
47	 55.35	0	50181..50675	-	164	110832908	-	ABO_0047	-	hypothetical protein
48	 51.44	0	50728..51213	-	161	110832909	-	ABO_0048	-	nucleotide-binding protein
49	 54.37	0	51434..52393	+	319	110832910	-	ABO_0049	-	hypothetical protein
50	 51.69	0	52407..52673	+	88	110832911	-	ABO_0050	-	hypothetical protein
51	 59.43	+1	52974..53705	+	243	110832912	guaA	ABO_0051	-	glutamine amidotransferase
52	 53.48	0	53898..54602	-	234	110832913	-	ABO_0052	-	hypothetical protein
53	 59.10	+1	54715..55335	+	206	110832914	-	ABO_0053	-	acetyltransferase
54	 53.80	0	55586..56191	+	201	110832915	-	ABO_0054	-	TetR family transcriptional regulator
55	 51.67	0	56321..58141	+	606	110832916	-	ABO_0055	-	acyltransferase
56	 52.93	0	58413..58958	+	181	110832917	-	ABO_0056	-	hypothetical protein
57	 49.96	-1	58962..60218	+	418	110832918	-	ABO_0057	-	hypothetical protein
58	 53.07	0	60382..60918	+	178	110832919	-	ABO_0058	-	cytochrome b561, putative
59	 55.79	0	61046..61468	+	140	110832920	-	ABO_0059	-	peptidyl-tRNA hydrolase
60	 54.85	0	61921..63291	+	456	110832921	-	ABO_0060	-	hypothetical protein
61	 54.96	0	63683..64639	+	318	110832922	-	ABO_0061	-	alcohol dehydrogenase
62	 53.85	0	64661..65128	-	155	110832923	-	ABO_0062	-	hypothetical protein
63	 54.85	0	65166..67400	-	744	110832924	-	ABO_0063	-	hypothetical protein
64	 54.19	0	67549..68013	+	154	110832925	-	ABO_0064	-	hypothetical protein
65	 51.59	0	68167..68418	-	83	110832926	-	ABO_0065	-	hypothetical protein
66	 59.97	+1	68748..69449	-	233	110832927	-	ABO_0066	-	fumarylacetoacetate hydrolase family protein
67	 56.94	0	69442..70839	-	465	110832928	-	ABO_0067	-	oxidoreductase with NAD+ or NADP+ as acceptor
68	 55.53	0	70979..72208	+	409	110832929	serA	ABO_0068	-	D-3-phosphoglycerate dehydrogenase
69	 56.43	0	72335..73702	+	455	110832930	-	ABO_0069	-	hypothetical protein
70	 54.39	0	73699..74097	+	132	110832931	-	ABO_0070	-	hypothetical protein
71	 50.42	-1	74141..74731	+	196	110832932	-	ABO_0071	-	hypothetical protein
72	 56.15	0	74931..76223	+	430	110832933	-	ABO_0072	-	hypothetical protein
73	 57.14	0	76396..77655	-	419	110832934	-	ABO_0073	-	hypothetical protein
74	 58.37	0	77735..78337	-	200	110832935	-	ABO_0074	-	CBS domain-containing protein
75	 57.66	0	78488..80275	+	595	110832936	kefB	ABO_0075	-	glutathione-regulated potassium-protonantiporter
76	 54.87	0	80354..82531	+	725	110832937	fhuE	ABO_0076	-	outer membrane ferric siderophore receptor precursor
77	 51.11	0	82568..82747	+	59	110832938	-	ABO_0077	-	hypothetical protein
78	 53.47	0	82763..83209	-	148	110832939	-	ABO_0078	-	hypothetical protein
79	 52.59	0	83762..84301	-	179	110832940	-	ABO_0079	-	acyltransferases
80	 59.43	+1	84351..86036	-	561	110832941	ggt	ABO_0080	-	gamma-glutamyltransferase precursor
81	 54.72	0	86270..86830	-	186	110832942	coaD	ABO_0081	-	pantetheine-phosphate adenylyltransferase
82	 55.04	0	87194..87451	+	85	110832943	-	ABO_0082	-	transposase
83	 55.05	0	87866..88330	+	154	110832944	-	ABO_0083	-	transposase, putative
84	 55.78	0	88657..89538	-	293	110832945	-	ABO_0084	-	hypothetical protein
85	 56.55	0	89667..91277	-	536	110832946	-	ABO_0085	-	GMC oxidoreductase family protein, putative
86	 59.55	+1	91337..91870	-	177	110832947	-	ABO_0086	-	hypothetical protein
87	 53.22	0	92020..93462	-	480	110832948	aldH	ABO_0087	-	aldehyde dehydrogenase
88	 53.85	0	93591..94292	+	233	110832949	phaD	ABO_0088	-	TetR family transcriptional regulator
89	 55.81	0	94310..95479	-	389	110832951	-	ABO_0089	-	alpha/beta fold family hydrolase
90	 58.92	+1	95402..96124	+	240	110832950	-	ABO_0090	-	hypothetical protein
91	 59.71	+1	96114..96530	+	138	110832952	-	ABO_0091	-	hypothetical protein
92	 62.76	+2	96622..97491	+	289	110832953	-	ABO_0092	-	hypothetical protein
93	 55.03	0	97507..98082	+	191	110832954	-	ABO_0093	-	AraC family transcriptional regulator
94	 53.57	0	98144..98815	-	223	110832955	-	ABO_0094	-	hypothetical protein
95	 48.62	-1	98924..99466	-	180	110832956	gloA	ABO_0095	-	lactoylglutathione lyase
96	 51.98	0	99693..100652	-	319	110832957	-	ABO_0096	-	SPFH domain-containing protein/band 7 family protein
97	 54.64	0	100728..101201	-	157	110832958	-	ABO_0097	-	hypothetical protein
98	 54.83	0	101418..101966	-	182	110832959	-	ABO_0098	-	peptidyl-prolyl cis-trans isomerase
99	 51.17	0	102202..102756	-	184	110832960	cybB	ABO_0099	-	cytochrome B651
100	 56.66	0	102820..103818	-	332	110832961	lpxL3	ABO_0100	-	lipid A biosynthesis lauroyl acyltransferase
54.83	MEAN

3.73	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.