IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.26	-1	232..1587	+	451	21909537	dnaA	SpyM3_0001	-	chromosomal replication initiation protein
2	 33.42	-1	1742..2878	+	378	21909538	dnaN	SpyM3_0002	-	DNA polymerase III subunit beta
3	 32.32	-1	2953..3150	+	65	21909539	-	SpyM3_0003	-	hypothetical protein
4	 37.28	0	3480..4595	+	371	21909540	-	SpyM3_0004	-	translation-associated GTPase
5	 31.75	-1	4665..5234	+	189	21909541	pth	SpyM3_0005	-	peptidyl-tRNA hydrolase
6	 35.41	0	5321..8740	+	1139	21909542	trcF	SpyM3_0006	-	putative transcription-repair coupling factor
7	 30.77	-2	8902..9174	+	90	21909543	-	SpyM3_0007	-	hypothetical protein
8	 26.34	-2	9161..9532	+	123	21909544	divIC	SpyM3_0008	-	putative cell division protein
9	 31.55	-1	9667..10953	+	428	21909545	-	SpyM3_0009	-	hypothetical protein
10	 28.62	-2	11049..12236	+	395	21909546	mesJ	SpyM3_0010	-	putative cell-cycle protein
11	 30.76	-2	12241..12783	+	180	21909547	hpt	SpyM3_0011	-	hypoxanthine-guanine phosphoribosyltransferase
12	 37.63	0	12805..14784	+	659	21909548	ftsH	SpyM3_0012	-	putative cell division protein
13	 32.97	-1	15110..16501	+	463	21909549	-	SpyM3_0013	-	putative amino acid permease
14	 40.69	0	31195..32391	+	398	21909550	-	SpyM3_0014	-	putative secreted protein
15	 38.94	0	32644..33606	+	320	21909551	prsA	SpyM3_0015	-	ribose-phosphate pyrophosphokinase
16	 31.22	-1	33792..34547	+	251	161485758	recO	SpyM3_0016	-	DNA repair protein RecO
17	 38.10	0	34650..35657	+	335	21909553	plsX	SpyM3_0017	-	putative glycerol-3-phosphate acyltransferase PlsX
18	 30.86	-2	35650..35892	+	80	21909554	acpP.1	SpyM3_0018	-	acyl carrier protein
19	 36.03	0	36044..36748	+	234	21909555	purC	SpyM3_0019	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
20	 44.98	+1	36942..40598	+	1218	21909556	purL	SpyM3_0020	-	putative phosphoribosylformylglycinamidine synthase II
21	 38.76	0	40832..42286	+	484	21909557	purF	SpyM3_0021	-	amidophosphoribosyltransferase
22	 42.82	+1	42314..43336	+	340	21909558	purM	SpyM3_0022	-	phosphoribosylaminoimidazole synthetase
23	 47.03	+2	43504..44058	+	184	21909559	purN	SpyM3_0023	-	phosphoribosylglycinamide formyltransferase
24	 47.16	+2	44242..45789	+	515	21909560	purH	SpyM3_0024	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
25	 39.29	0	45848..46972	-	374	21909561	-	SpyM3_0025	-	putative choline binding protein
26	 48.78	+2	47218..48492	+	424	21909562	purD	SpyM3_0026	-	phosphoribosylamine--glycine ligase
27	 48.69	+2	48650..49261	+	203	21909563	purE	SpyM3_0027	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
28	 50.29	+2	49302..50321	+	339	21909564	purK	SpyM3_0028	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
29	 28.71	-2	50342..51682	+	446	21909565	-	SpyM3_0029	-	hypothetical protein
30	 44.86	+1	52051..53343	+	430	21909566	purB	SpyM3_0030	-	adenylosuccinate lyase
31	 29.61	-2	53474..54385	+	303	21909567	-	SpyM3_0031	-	hypothetical protein
32	 39.64	0	54605..55603	+	332	21909568	ruvB	SpyM3_0032	-	Holliday junction DNA helicase B
33	 35.62	0	55741..56178	+	145	21909569	-	SpyM3_0033	-	putative protein-tyrosine phosphatase
34	 35.07	0	56201..56602	+	133	21909570	-	SpyM3_0034	-	hypothetical protein
35	 36.71	0	56599..58374	+	591	21909571	-	SpyM3_0035	-	putative acyltransferase
36	 40.33	0	58683..61325	+	880	21909572	adh2	SpyM3_0036	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
37	 42.38	+1	61578..62594	+	338	21909573	adh1	SpyM3_0037	-	alcohol dehydrogenase
38	 41.63	0	62982..64271	+	429	21909574	-	SpyM3_0038	-	multi antimicrobial extrusion (MATE) family transporter
39	 40.13	0	64470..64778	+	102	21909575	rpsJ	SpyM3_0039	-	30S ribosomal protein S10
40	 41.95	0	65026..65652	+	208	21909576	rplC	SpyM3_0040	-	50S ribosomal protein L3
41	 42.15	0	65676..66299	+	207	21909577	rplD	SpyM3_0041	-	50S ribosomal protein L4
42	 37.37	0	66299..66595	+	98	21909578	rplW	SpyM3_0042	-	50S ribosomal protein L23
43	 43.65	+1	66613..67446	+	277	21909579	rplB	SpyM3_0043	-	50S ribosomal protein L2
44	 40.50	0	67585..67863	+	92	21909580	rpsS	SpyM3_0044	-	30S ribosomal protein S19
45	 39.71	0	67879..68223	+	114	21909581	rplV	SpyM3_0045	-	50S ribosomal protein L22
46	 41.44	0	68236..68889	+	217	161485757	rpsC	SpyM3_0046	-	30S ribosomal protein S3
47	 43.24	+1	68893..69306	+	137	21909583	rplP	SpyM3_0047	-	50S ribosomal protein L16
48	 34.78	-1	69316..69522	+	68	21909584	rpmC	SpyM3_0048	-	50S ribosomal protein L29
49	 38.31	0	69548..69808	+	86	21909585	rpsQ	SpyM3_0049	-	30S ribosomal protein S17
50	 44.17	+1	69833..70201	+	122	21909586	rplN	SpyM3_0050	-	50S ribosomal protein L14
51	 36.60	0	70280..70585	+	101	21909587	rplX	SpyM3_0051	-	50S ribosomal protein L24
52	 40.52	0	70609..71151	+	180	21909588	rplE	SpyM3_0052	-	50S ribosomal protein L5
53	 39.25	0	71167..71352	+	61	21909589	rpsN	SpyM3_0053	-	30S ribosomal protein S14
54	 36.84	0	71503..71901	+	132	21909590	rpsH	SpyM3_0054	-	30S ribosomal protein S8
55	 38.92	0	72104..72640	+	178	21909591	rplF	SpyM3_0055	-	50S ribosomal protein L6
56	 45.94	+1	72745..73101	+	118	21909592	rplR	SpyM3_0056	-	50S ribosomal protein L18
57	 42.42	+1	73120..73614	+	164	21909593	rpsE	SpyM3_0057	-	30S ribosomal protein S5
58	 37.16	0	73629..73811	+	60	21909594	rpmD	SpyM3_0058	-	50S ribosomal protein L30
59	 39.68	0	74027..74467	+	146	21909595	rplO	SpyM3_0059	-	50S ribosomal protein L15
60	 36.48	0	74484..75788	+	434	21909596	secY	SpyM3_0060	-	preprotein translocase subunit SecY
61	 39.44	0	75938..76576	+	212	21909597	adk	SpyM3_0061	-	adenylate kinase
62	 36.99	0	76694..76912	+	72	21909598	infA	SpyM3_0062	-	translation initiation factor IF-1
63	 37.61	0	76938..77054	+	38	21909599	rpmJ	SpyM3_0063	-	50S ribosomal protein L36
64	 39.34	0	77072..77437	+	121	21909600	rpsM	SpyM3_0064	-	30S ribosomal protein S13
65	 44.01	+1	77455..77838	+	127	161485756	rpsK	SpyM3_0065	-	30S ribosomal protein S11
66	 37.91	0	77884..78822	+	312	21909602	rpoA	SpyM3_0066	-	DNA-directed RNA polymerase subunit alpha
67	 40.57	0	78837..79223	+	128	21909603	rplQ	SpyM3_0067	-	50S ribosomal protein L17
68	 42.47	+1	86467..86652	+	61	21909604	-	SpyM3_0068	-	hypothetical protein
69	 33.78	-1	87975..88418	+	147	21909605	adcR	SpyM3_0069	-	putative repressor protein
70	 40.83	0	88422..89141	+	239	21909606	adcC	SpyM3_0070	-	ABC transporter ATP-binding protein
71	 38.60	0	89134..89949	+	271	21909607	adcB	SpyM3_0071	-	putative ABC transporter (permease)
72	 40.62	0	89989..90372	-	127	21909608	-	SpyM3_0072	-	putative histidine triad (HIT) protein
73	 41.61	0	90428..91684	-	418	21909609	tyrS	SpyM3_0073	-	tyrosyl-tRNA synthetase
74	 40.37	0	91788..94088	+	766	21909610	pbp1B	SpyM3_0074	-	putative penicillin-binding protein 1b
75	 43.06	+1	94352..97918	+	1188	21909611	rpoB	SpyM3_0075	-	DNA-directed RNA polymerase subunit beta
76	 44.07	+1	98009..101632	+	1207	21909612	rpoC	SpyM3_0076	-	DNA-directed RNA polymerase subunit beta'
77	 35.92	0	101802..102149	+	115	21909613	-	SpyM3_0077	-	putative DNA binding protein
78	 37.59	0	102242..103180	+	312	21909614	comYA	SpyM3_0078	-	putative ABC transporter subunit ComYA
79	 35.27	0	103116..104150	+	344	21909615	comYB	SpyM3_0079	-	putative ABC transporter subunit ComYB
80	 34.25	-1	104152..104478	+	108	21909616	comYC	SpyM3_0080	-	putative competence protein
81	 33.56	-1	104438..104881	+	147	21909617	-	SpyM3_0081	-	putative competence protein
82	 38.25	0	104838..105122	+	94	21909618	-	SpyM3_0082	-	hypothetical protein
83	 35.40	0	105115..105549	+	144	21909619	comYD	SpyM3_0083	-	putative competence protein
84	 35.47	0	105533..105859	+	108	21909620	-	SpyM3_0084	-	hypothetical protein
85	 38.16	0	105957..106910	+	317	21909621	-	SpyM3_0085	-	hypothetical protein
86	 39.10	0	106969..108165	+	398	21909622	ackA	SpyM3_0086	-	acetate kinase
87	 35.92	0	108351..108659	+	102	21909623	-	SpyM3_0087	-	hypothetical protein
88	 43.58	+1	108742..109512	-	256	21909624	proC	SpyM3_0088	-	pyrroline-5-carboxylate reductase
89	 45.51	+1	109560..110627	-	355	21909625	pepA	SpyM3_0089	-	putative glutamyl-aminopeptidase
90	 36.84	0	111092..111376	+	94	21909626	-	SpyM3_0090	-	hypothetical protein
91	 34.91	0	111373..111690	+	105	21909627	trx.1	SpyM3_0091	-	putative thioredoxin
92	 42.58	+1	111708..112334	+	208	21909628	-	SpyM3_0092	-	hypothetical protein
93	 38.13	0	112486..112881	+	131	21909629	ssb.1	SpyM3_0093	-	single-strand DNA-binding protein
94	 39.88	0	113141..113782	-	213	21909630	-	SpyM3_0094	-	putative deoxyguanosine kinase/deoxyadenosine kinase(I)subunit
95	 45.81	+1	113802..114779	-	325	21909631	-	SpyM3_0095	-	tRNA-dihydrouridine synthase
96	 41.92	0	114766..115638	-	290	21909632	hslO	SpyM3_0096	-	Hsp33-like chaperonin
97	 31.97	-1	115764..117299	-	511	21909633	nra	SpyM3_0097	-	negative transcriptional regulator
98	 35.03	0	117729..119963	+	744	21909634	cbp	SpyM3_0098	-	putative collagen binding protein
99	 38.12	0	119960..120481	+	173	21909635	-	SpyM3_0099	-	hypothetical protein
100	 33.82	-1	120502..121536	+	344	21909636	-	SpyM3_0100	-	hypothetical protein
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.