IslandPath Analysis: Pyrococcus horikoshii OT3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.92   STD DEV: 3.59
Pyrococcus horikoshii OT3, complete genome - 1..1738505
1955 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.66	+1	126..620	-	164	14589964	rpl11p	PH0001	-	50S ribosomal protein L11P
2	 42.31	0	632..1099	-	155	14589965	nusG	PH0002	-	transcription antitermination protein NusG
3	 43.55	0	1096..1281	-	61	14591735	secE	PH0002a	-	preprotein translocase subunit SecE
4	 46.47	+1	1333..2451	-	372	14589966	-	PH0003	-	cell division protein FtsZ
5	 46.04	+1	2519..2935	-	138	14589967	-	PH0005	-	hypothetical protein
6	 36.73	-1	2965..3258	-	97	33359247	-	PH0005.1n	-	hypothetical protein
7	 41.70	0	3299..4123	-	274	14589968	-	PH0006	-	hypothetical protein
8	 43.63	0	4197..4895	+	232	14589969	-	PH0007	-	hypothetical protein
9	 41.29	0	4890..6032	-	380	14589970	-	PH0008	-	hypothetical protein
10	 32.15	-2	6218..7735	-	505	14589971	-	PH0009	-	hypothetical protein
11	 45.57	+1	7878..8498	+	206	14589972	-	PH0010	-	hypothetical protein
12	 43.66	0	8476..9327	-	283	14589973	-	PH0011	-	nicotinate-nucleotide pyrophosphorylase
13	 40.62	0	9324..10133	-	269	14589974	-	PH0012	-	hypothetical protein
14	 44.85	0	10130..11032	-	300	14589975	-	PH0013	-	quinolinate synthetase
15	 39.65	0	11076..12263	-	395	14589976	-	PH0014	-	hypothetical protein
16	 44.52	0	12298..13692	-	464	14589977	-	PH0015	-	L-aspartate oxidase
17	 42.65	0	13689..15116	-	475	14589978	-	PH0016	-	phosphoenolpyruvate carboxylase
18	 48.97	+1	15523..17172	-	549	14589979	-	PH0017	-	thermosome subunit alpha
19	 41.02	0	17334..18062	+	242	14589980	-	PH0019	-	hypothetical protein
20	 42.96	0	18046..18762	-	238	14589981	-	PH0020	-	hypothetical protein
21	 45.64	+1	18773..20608	-	611	14589982	-	PH0021	-	anaerobic ribonucleoside triphosphate reductase
22	 45.19	0	20823..21944	-	373	14589983	-	PH0022	-	sugar-binding transport ATP-binding protein
23	 44.48	0	21923..22756	-	277	14589984	-	PH0023	-	sugar transport membrane protein
24	 42.92	0	22753..23607	-	284	14589985	-	PH0024	-	sugar transport membrane protein
25	 48.63	+1	23644..24924	-	426	14589986	-	PH0025	-	hypothetical protein
26	 41.20	0	25094..26110	+	338	14589987	-	PH0026	-	hypothetical protein
27	 44.20	0	26107..26382	-	91	14591737	ef1B	PH0026b	-	elongation factor 1-beta
28	 46.88	+1	26383..26574	-	63	14591736	-	PH0026a	-	Zn-ribbon RNA-binding protein involved in translation
29	 43.88	0	26670..27503	+	277	14589988	ubiA	PH0027	-	prenyltransferase UbiA-like protein
30	 39.68	0	27507..27884	+	125	33359248	-	PH0027.1n	-	anaerobic ribonucleoside-triphosphate reductase
31	 49.68	+2	27888..29753	-	621	14589989	-	PH0028	-	aldehyde:ferredoxin oxidoreductase
32	 47.81	+1	29741..30562	-	273	14589990	-	PH0031	-	morphine 6-dehydrogenase
33	 41.33	0	30578..31690	-	370	14589991	-	PH0032	-	hypothetical protein
34	 47.92	+1	31723..32730	-	335	14589992	-	PH0034	-	hypothetical protein
35	 44.01	0	32545..32853	+	102	14589993	-	PH0035	-	hypothetical protein
36	 44.07	0	34778..35224	+	148	14589994	-	PH0036	-	hypothetical protein
37	 49.88	+2	35249..36487	-	412	14589995	-	PH0037	-	cofactor-independent phosphoglycerate mutase
38	 48.81	+1	36523..37239	-	238	14589996	-	PH0039	-	modification methylase
39	 46.18	+1	37437..37724	-	95	14591738	-	PH0041a	-	DNA-directed RNA polymerase subunit L
40	 46.83	+1	37714..38343	-	209	14589997	-	PH0042	-	hypothetical protein
41	 44.78	0	38340..38942	-	200	14589998	-	PH0043	-	exosome complex RNA-binding protein Csl4
42	 44.70	0	38909..41476	-	855	14589999	-	PH0044	-	hypothetical protein
43	 42.31	0	41485..41952	-	155	14590000	-	PH0045	-	hypothetical protein
44	 42.98	0	41956..42297	-	113	14590001	-	PH0046	-	hypothetical protein
45	 44.17	0	42388..42756	-	122	14590002	-	PH0047	-	hypothetical protein
46	 45.41	0	42797..44494	+	565	14590003	-	PH0048	-	hypothetical protein
47	 42.09	0	44478..45539	-	353	14590004	-	PH0051	-	dolichol-phosphate mannosyltransferase
48	 46.20	+1	45576..46259	-	227	14590005	-	PH0052	-	fibrillarin
49	 46.26	+1	46265..47479	-	404	14590006	-	PH0053	-	hypothetical protein
50	 45.60	+1	47556..48533	-	325	161350013	-	PH0054	-	D-cysteine desulfhydrase
51	 70.19	+2	48580..48891	+	103	14590008	-	PH0055	-	hypothetical protein
52	 44.44	0	49082..49774	-	230	14590009	-	PH0056	-	hypothetical protein
53	 44.58	0	49752..50258	-	168	14590010	-	PH0057	-	hypothetical protein
54	 47.59	+1	50393..50869	+	158	14590011	rps15p	PH0058	-	30S ribosomal protein S15P
55	 46.21	+1	50891..52327	+	478	14590012	-	PH0059	-	hypothetical protein
56	 39.29	0	52311..52562	+	83	33359249	-	PH0059.1n	-	hypothetical protein
57	 45.00	0	52559..53158	+	199	14590013	-	PH0060	-	30S ribosomal protein S3Ae
58	 34.21	-2	53155..53610	-	151	14590014	-	PH0061	-	hypothetical protein
59	 40.08	0	53683..53919	-	78	14590015	-	PHS001	-	hypothetical protein
60	 37.92	-1	53936..54349	-	137	14590016	-	PH0062	-	hypothetical protein
61	 38.30	-1	54454..55218	+	254	14590017	-	PH0063	-	hypothetical protein
62	 37.22	-1	54861..55169	-	102	14590018	-	PH0064	-	hypothetical protein
63	 45.52	+1	55278..55991	+	237	14590019	-	PH0065	-	hypothetical protein
64	 35.21	-1	55985..56197	+	70	33359250	-	PH0065.1n	-	hypothetical protein
65	 44.72	0	56379..56624	+	81	33359251	-	PH0065.2n	-	hypothetical protein
66	 41.74	0	56608..57594	-	328	14590020	-	PH0066	-	L-asparaginase
67	 40.94	0	57682..57852	-	56	33359252	-	PH0066.1n	-	hypothetical protein
68	 41.11	0	57822..58400	-	192	33359253	-	PH0067	-	hypothetical protein
69	 42.42	0	58436..58897	+	153	14590022	-	PH0068	-	hypothetical protein
70	 42.89	0	58956..60326	-	456	14590023	-	PH0069	-	hypothetical protein
71	 40.10	0	60379..61206	+	275	14590024	-	PH0070	-	hypothetical protein
72	 42.44	0	61203..61784	-	193	14590025	-	PH0071	-	hypothetical protein
73	 38.41	0	61827..62417	+	196	14590026	-	PH0072	-	hypothetical protein
74	 42.18	0	62507..63094	+	195	14590027	-	PH0073	-	hypothetical protein
75	 40.24	0	63009..63500	+	163	14590028	-	PH0074	-	hypothetical protein
76	 41.67	0	63497..64024	-	175	14590029	-	PH0075	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
77	 37.69	-1	64096..64944	+	282	14590030	-	PH0076	-	hypothetical protein
78	 41.07	0	64924..65259	-	111	14590031	-	PH0077	-	hypothetical protein
79	 45.58	+1	64949..66034	+	361	14590032	-	PH0078	-	D-aminopeptidase
80	 43.82	0	66031..67098	+	355	14590033	-	PH0080	-	hypothetical protein
81	 43.57	0	67104..67826	-	240	14590034	-	PH0081	-	hypothetical protein
82	 44.29	0	67831..68040	-	69	33359254	-	PH0081.1n	-	hypothetical protein
83	 47.87	+1	68134..68979	+	281	14590035	-	PH0082	-	fructose-bisphosphate aldolase
84	 43.66	0	69041..69892	+	283	14590036	-	PH0083	-	agmatinase
85	 41.93	0	69899..70375	+	158	14590037	-	PH0084	-	hypothetical protein
86	 41.36	0	70372..71181	-	269	14590038	-	PH0085	-	hypothetical protein
87	 39.85	0	71154..71828	+	224	14590039	-	PH0087	-	hypothetical protein
88	 40.36	0	71825..72835	+	336	14590040	-	PH0088	-	hypothetical protein
89	 39.60	0	72768..73772	+	334	14590041	-	PH0089	-	hypothetical protein
90	 42.19	0	73753..75141	+	462	14590042	-	PH0090	-	hypothetical protein
91	 48.46	+1	75247..77712	+	821	14590043	-	PH0092	-	phosphoenolpyruvate synthase
92	 42.07	0	77775..78518	+	247	14590044	-	PH0093	-	hypothetical protein
93	 44.29	0	78515..80257	+	580	14590045	-	PH0094	-	hypothetical protein
94	 44.37	0	80323..80784	+	153	14590046	-	PH0095	-	purine phosphoribosyltransferase
95	 45.23	0	80828..81424	+	198	14590047	-	PH0096	-	hypothetical protein
96	 41.67	0	81417..81572	-	51	33359255	-	PH0096.1n	-	hypothetical protein
97	 40.74	0	81542..81892	-	116	14590048	-	PH0097	-	hypothetical protein
98	 38.49	0	81993..82244	-	83	33359256	-	PH0097.1n	-	hypothetical protein
99	 35.58	-1	82327..82593	+	88	33359257	-	PH0097.2n	-	hypothetical protein
100	 39.07	0	82565..83017	+	150	33359258	-	PH0098	-	hypothetical protein
41.92	MEAN

3.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.