IslandPath Analysis: Burkholderia xenovorans LB400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.69   STD DEV: 4.41
Burkholderia xenovorans LB400 chromosome 1, complete sequence - 1..4895836
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.81	0	192..1826	+	544	91781385	dnaA	Bxe_A4462	-	chromosomal replication initiation protein
2	 59.60	0	2047..3150	+	367	91781386	-	Bxe_A4461	-	DNA polymerase III subunit beta
3	 57.48	-1	3266..5737	+	823	91781387	gyrB	Bxe_A4460	-	DNA gyrase subunit B
4	 64.52	0	5932..7425	-	497	91781388	-	Bxe_A4459	-	putative transposase
5	 55.02	-1	8140..8388	-	82	91781389	-	Bxe_A4458	-	hypothetical protein
6	 60.79	0	8408..9037	-	209	91781390	-	Bxe_A4457	-	putative transposase
7	 57.47	-1	9386..11887	+	833	91781391	-	Bxe_A4456	-	hypothetical protein
8	 60.05	0	11968..13479	+	503	91781392	-	Bxe_A4455	-	putative transposase
9	 55.68	-1	13469..14278	+	269	91781393	-	Bxe_A4454	-	putative DNA replication protein
10	 61.17	0	14424..15005	-	193	91781394	-	Bxe_A4453	-	putative flavin-dependent reductase
11	 60.64	0	15111..16586	-	491	91781395	-	Bxe_A4452	-	hypothetical protein
12	 61.50	0	16649..17965	-	438	91781396	-	Bxe_A4451	-	MFS superfamily oxalate/formate antiporter
13	 60.24	0	18021..18347	-	108	91781397	-	Bxe_A4450	-	hypothetical protein
14	 63.22	0	18386..19111	-	241	91781398	-	Bxe_A4449	-	GntR family transcriptional regulator
15	 65.09	0	19242..20768	-	508	91781399	-	Bxe_A4448	-	Altronate dehydratase
16	 66.53	0	20900..21616	+	238	91781400	-	Bxe_A4447	-	GntR family transcriptional regulator
17	 59.83	0	22011..22493	-	160	91781401	-	Bxe_A4446	-	putative DNA gyrase inhibitor
18	 61.18	0	22755..24158	+	467	91781402	-	Bxe_A4445	-	ethanolamine transporter, EAT family, APC superfamily
19	 61.72	0	24202..25596	+	464	91781403	-	Bxe_A4444	-	ethanolamine ammonia-lyase heavy chain
20	 63.28	0	25593..26390	+	265	91781404	-	Bxe_A4443	-	ethanolamine ammonia-lyase small subunit
21	 59.60	0	26407..26802	-	131	91781405	-	Bxe_A4442	-	hypothetical protein
22	 59.76	0	26868..28388	-	506	91781406	-	Bxe_A4441	-	aldehyde dehydrogenase
23	 65.91	0	28717..29775	+	352	91781407	-	Bxe_A4440	-	AraC family transcriptional regulator
24	 67.18	+1	29838..31967	-	709	91781408	-	Bxe_A4439	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
25	 58.80	0	32344..32775	+	143	91781409	-	Bxe_A4438	-	MerR family transcriptional regulator
26	 61.79	0	32832..33077	+	81	91781410	-	Bxe_A4437	-	hypothetical protein
27	 63.89	0	33113..34516	+	467	91781411	-	Bxe_A4436	-	ATP-dependent RNA helicase DbpA
28	 60.87	0	34841..35995	+	384	91781412	-	Bxe_A4435	-	putative aminotransferase
29	 62.14	0	36117..36911	+	264	91781413	-	Bxe_A4434	-	ABC amino acid transporter, periplasmic ligand binding protein
30	 63.50	0	37085..38950	-	621	91781414	-	Bxe_A4433	-	hypothetical protein
31	 60.45	0	39493..40023	+	176	91781415	-	Bxe_A4432	-	hypothetical protein
32	 61.33	0	40056..41948	+	630	91781416	-	Bxe_A4431	-	hypothetical protein
33	 57.29	-1	42394..44568	+	724	91781417	-	Bxe_A4429	-	Rhs element Vgr protein
34	 58.22	-1	44699..46036	+	445	91781418	-	Bxe_A4428	-	hypothetical protein
35	 57.70	-1	46092..46448	+	118	91781419	-	Bxe_A4427	-	hypothetical protein
36	 60.26	0	46582..50670	+	1362	91781420	-	Bxe_A4426	-	Rhs family protein
37	 63.46	0	51141..51545	+	134	91781421	-	Bxe_A4425	-	phenylacetic acid degradation-related protein
38	 65.64	0	51583..52461	+	292	91781422	-	Bxe_A4424	-	putative patatin-like phospholipase protein
39	 61.36	0	52547..53638	-	363	91781423	-	Bxe_A4423	-	putative 2-hydroxyacid dehydrogenase
40	 64.40	0	53941..55797	+	618	91781424	-	Bxe_A4422	-	phosphoenolpyruvate carboxykinase
41	 51.25	-2	55810..56088	-	92	91781425	-	Bxe_A4421	-	hypothetical protein
42	 62.50	0	56137..57240	+	367	91781426	-	Bxe_A4420	-	LysR family transcriptional regulator
43	 62.73	0	57407..60073	-	888	91781427	-	Bxe_A4419	-	DNA topoisomerase III
44	 60.85	0	60321..60698	-	125	91781428	-	Bxe_A4418	-	putative thioredoxin protein
45	 68.64	+1	60788..62053	-	421	91781429	-	Bxe_A4417	-	SMF protein
46	 57.94	-1	62298..62801	+	167	91781430	def	Bxe_A4416	-	peptide deformylase
47	 67.88	+1	62833..63819	+	328	91781431	fmt	Bxe_A4415	-	methionyl-tRNA formyltransferase
48	 64.02	0	63933..64574	+	213	91781432	-	Bxe_A4414	-	amino acid efflux pump, RhtB family protein
49	 63.19	0	64646..65536	+	296	91781433	-	Bxe_A4413	-	heat shock protein HtpX
50	 67.83	+1	65920..67293	+	457	91781434	-	Bxe_A4412	-	Fmu, rRNA SAM-dependent methyltransferase
51	 60.83	0	67290..67889	+	199	91781435	-	Bxe_A4411	-	hypothetical protein
52	 63.96	0	67891..70293	+	800	91781436	-	Bxe_A4410	-	multi-sensor Signal transduction histidine kinase
53	 64.78	0	70294..70983	+	229	91781437	-	Bxe_A4409	-	two component Fis family transcriptional regulator
54	 67.35	+1	71231..71521	-	96	91781438	-	Bxe_A4408	-	hypothetical protein
55	 64.81	0	71599..72297	+	232	91781439	-	Bxe_A4407	-	ExsB
56	 62.72	0	72371..73003	+	210	91781440	-	Bxe_A4406	-	hypothetical protein
57	 59.96	0	73010..73456	+	148	91781441	-	Bxe_A4405	-	putative 6-pyruvoyl tetrahydropterin synthase
58	 68.20	+1	73714..74496	+	260	91781442	-	Bxe_A4404	-	2-dehydro-3-deoxyglucarate aldolase
59	 65.81	0	74493..75194	+	233	91781443	-	Bxe_A4403	-	hypothetical protein
60	 62.05	0	75294..76442	-	382	91781444	-	Bxe_A4402	-	putative rod shape-determining protein, rodA
61	 65.67	0	76453..78756	-	767	91781445	-	Bxe_A4401	-	peptidoglycan glycosyltransferase
62	 63.55	0	78898..79410	-	170	91781446	-	Bxe_A4400	-	rod shape-determining protein MreD
63	 66.85	0	79407..80516	-	369	91781447	-	Bxe_A4399	-	rod shape-determining protein MreC
64	 62.07	0	80670..81713	-	347	91781448	-	Bxe_A4398	-	rod shape-determining protein MreB
65	 62.67	0	82093..82392	+	99	91781449	gatC	Bxe_A4397	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
66	 65.39	0	82586..84073	+	495	91781450	gatA	Bxe_A4396	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
67	 61.99	0	84079..85554	+	491	91781451	gatB	Bxe_A4395	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
68	 60.00	0	85690..86529	+	279	91781452	-	Bxe_A4394	-	hypothetical protein
69	 58.59	0	86576..87355	+	259	91781453	-	Bxe_A4393	-	exodeoxyribonucleaseiii xth
70	 65.17	0	87454..88254	-	266	91781454	-	Bxe_A4392	-	hypothetical protein
71	 74.89	+2	88340..88777	+	145	91781455	-	Bxe_A4391	-	hypothetical protein
72	 63.51	0	88701..90095	-	464	91781456	-	Bxe_A4390	-	major facilitator superfamily (MFS)muropeptide transporter
73	 63.71	0	90110..90718	-	202	91781457	-	Bxe_A4389	-	hypothetical protein
74	 64.14	0	90715..91860	-	381	91781458	metX	Bxe_A4388	-	homoserine O-acetyltransferase
75	 63.96	0	92179..92880	-	233	161621319	slmA	Bxe_A4387	-	nucleoid occlusion protein
76	 64.80	0	92847..93650	-	267	91781460	-	Bxe_A4386	-	HAD family hydrolase
77	 62.11	0	93865..94764	-	299	91781461	-	Bxe_A4385	-	acetylglutamate kinase
78	 67.09	0	95295..96935	-	546	91781462	-	Bxe_A4384	-	hypothetical protein
79	 62.93	0	97065..98375	+	436	91781463	-	Bxe_A4383	-	periplasmic sensor Signal transduction histidine kinase
80	 62.43	0	98372..98914	+	180	91781464	-	Bxe_A4382	-	two component Fis family transcriptional regulator
81	 60.95	0	99064..100410	-	448	91781465	hslU	Bxe_A4381	-	ATP-dependent protease ATP-binding subunit
82	 64.06	0	100420..100956	-	178	91781466	-	Bxe_A4380	-	ATP-dependent protease peptidase subunit
83	 60.95	0	101289..101708	-	139	91781467	-	Bxe_A4379	-	TraR/DksA family transcriptional regulator
84	 56.30	-1	101909..102265	+	118	91781468	-	Bxe_A4378	-	hypothetical protein
85	 58.24	-1	102386..103477	-	363	91781469	-	Bxe_A4377	-	hypothetical protein
86	 64.92	0	103667..104869	-	400	91781470	-	Bxe_A4376	-	SAM-dependent methyltransferase
87	 68.18	+1	104965..105888	-	307	91781471	xerC	Bxe_A4375	-	site-specific tyrosine recombinase XerC
88	 67.50	+1	105930..106652	-	240	91781472	-	Bxe_A4374	-	hypothetical protein
89	 67.01	0	106734..107597	-	287	91781473	dapF	Bxe_A4373	-	diaminopimelate epimerase
90	 63.84	0	107696..108580	-	294	91781474	-	Bxe_A4372	-	lipid A biosynthesis lauroyl acyltransferase
91	 63.64	0	108858..110048	+	396	91781475	-	Bxe_A4371	-	S-adenosylmethionine synthetase
92	 67.88	+1	110251..110661	-	136	91781476	-	Bxe_A4370	-	hypothetical protein
93	 60.89	0	111078..111839	+	253	91781477	-	Bxe_A4369	-	hypothetical protein
94	 63.29	0	111929..112135	-	68	91781478	-	Bxe_A4368	-	hypothetical protein
95	 61.69	0	112352..113395	+	347	91781479	-	Bxe_A4367	-	putative aldo/keto reductase
96	 62.90	0	113457..113642	-	61	91781480	-	Bxe_A4366	-	hypothetical protein
97	 65.93	0	113912..115132	-	406	91781481	-	Bxe_A4365	-	major facilitator transporter
98	 68.95	+1	115383..116912	-	509	91781482	-	Bxe_A4364	-	RND efflux system outer membrane lipoprotein
99	 66.81	0	116909..118312	-	467	91781483	-	Bxe_A4363	-	RND efflux system membrane fusion protein
100	 62.21	0	118431..121613	-	1060	91781484	-	Bxe_A4362	-	AcrB/AcrD/AcrF family cation efflux protein
62.69	MEAN

4.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.