IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.69   STD DEV: 3.56
Brucella abortus S19 chromosome 2, complete sequence - 1..1161449
1033 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.02	-1	155..1348	+	397	189022235	-	BAbS19_II00010	-	Replication protein C
2	 47.33	-2	1413..1562	-	49	189022237	-	BAbS19_II00020	-	hypothetical protein
3	 52.27	-1	1551..1814	+	87	189022236	-	BAbS19_II00030	-	hypothetical protein
4	 61.78	+1	2092..3033	+	313	189022238	-	BAbS19_II00040	-	Ribokinase
5	 56.94	0	3110..4045	-	311	189022239	-	BAbS19_II00050	-	Inosine/uridine-preferring nucleoside hydrolase
6	 61.94	+1	4907..5986	-	359	189022240	-	BAbS19_II00060	-	Bacterial inner-membrane translocator
7	 62.83	+1	6048..7430	-	460	189022241	-	BAbS19_II00070	-	ABC transporter
8	 55.92	0	7622..8728	-	368	189022242	-	BAbS19_II00080	-	Adenine nucleotide translocator 1
9	 58.13	0	8972..9580	+	202	189022243	-	BAbS19_II00090	-	hypothetical protein
10	 62.21	+1	9552..10157	-	201	189022244	-	BAbS19_II00100	-	Enterobactin synthetase, component D
11	 61.65	+1	10267..11043	-	258	189022245	-	BAbS19_II00110	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
12	 60.82	0	11043..11915	-	290	189022246	-	BAbS19_II00120	-	Isochorismatase
13	 60.99	0	11967..13586	-	539	189022247	-	BAbS19_II00130	-	EntE, 2,3-dihydroxybenzoate-AMP ligase
14	 61.48	+1	13693..14868	-	391	189022248	-	BAbS19_II00140	-	Isochorismate synthase
15	 58.91	0	15009..16349	+	446	189022249	-	BAbS19_II00150	-	Condensation domain protein
16	 57.92	0	16397..17185	-	262	189022250	-	BAbS19_II00160	-	Eukaryotic molybdopterin oxidoreductase
17	 55.93	0	17182..17991	-	269	189022251	-	BAbS19_II00170	-	Nickel-dependent hydrogenase b-type cytochrome subunit
18	 51.48	-1	18052..18321	-	89	189022252	-	BAbS19_II00180	-	hypothetical protein
19	 60.04	0	18518..19030	+	170	189022253	-	BAbS19_II00190	-	Sigma-70 region 2
20	 63.84	+1	19020..19655	+	211	189022254	-	BAbS19_II00200	-	extracytoplasmic function alternative sigma factor
21	 58.70	0	19701..20441	-	246	189022255	-	BAbS19_II00210	-	Bacterial regulatory protein, GntR family
22	 57.79	0	20724..21974	+	416	189022256	-	BAbS19_II00220	-	Leu/Ile/Val-binding protein family
23	 57.54	0	22064..23005	+	313	189022257	-	BAbS19_II00230	-	Bacterial inner-membrane translocator
24	 61.26	+1	23009..24229	+	406	189022258	-	BAbS19_II00240	-	Bacterial inner-membrane translocator
25	 58.83	0	24229..24981	+	250	189022259	-	BAbS19_II00250	-	ABC transporter
26	 58.58	0	24981..25697	+	238	189022260	-	BAbS19_II00260	-	ABC transporter
27	 61.28	+1	25749..26231	+	160	189022261	-	BAbS19_II00270	-	Glyoxalase/Bleomycin resistance protein/dioxygenase domain protein
28	 59.08	0	26235..26972	+	245	189022262	-	BAbS19_II00280	-	Short-chain dehydrogenase/reductase SDR
29	 63.22	+1	27221..27742	+	173	189022263	-	BAbS19_II00290	-	oxidoreductase, short-chain dehydrogenase/reductase family
30	 62.37	+1	27852..30041	+	729	189022264	-	BAbS19_II00300	-	Dehydrogenase, E1 component
31	 61.93	+1	30060..31325	+	421	189022265	-	BAbS19_II00310	-	hypothetical acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase
32	 61.70	+1	31426..32211	+	261	189022266	-	BAbS19_II00320	-	Shikimate/quinate 5-dehydrogenase
33	 65.50	+2	32484..32741	+	85	189022267	-	BAbS19_II00330	-	hypothetical protein
34	 59.31	0	33090..35807	+	905	189022268	-	BAbS19_II00340	-	magnesium ion-transporting ATPase, E1-E2 family
35	 61.27	+1	36374..36577	+	67	189022269	-	BAbS19_II00350	-	hypothetical protein
36	 59.27	0	36579..37295	+	238	189022270	-	BAbS19_II00360	-	MgtC/SapB transporter
37	 57.89	0	37370..38440	+	356	189022271	-	BAbS19_II00370	-	sensor histidine kinase
38	 55.24	0	38437..39075	+	212	189022272	-	BAbS19_II00380	-	Bacterial regulatory protein, LuxR family
39	 54.27	0	39461..39823	-	120	189022273	-	BAbS19_II00390	-	Response regulator receiver
40	 58.36	0	40142..41032	+	296	189022274	-	BAbS19_II00400	-	N-formylglutamate amidohydrolase
41	 61.13	0	41194..41970	+	258	189022275	-	BAbS19_II00410	-	Inositol phosphatase/fructose-1,6-bisphosphatase
42	 61.14	0	42021..43016	-	331	189022276	-	BAbS19_II00420	-	Alpha/beta hydrolase fold
43	 62.16	+1	43366..43764	-	132	189022277	-	BAbS19_II00430	-	Antifreeze protein, type I
44	 47.76	-2	43825..44025	+	66	189022278	-	BAbS19_II00440	-	hypothetical protein
45	 56.05	0	44328..44798	+	156	189022279	-	BAbS19_II00450	-	Heat shock protein Hsp20
46	 59.90	0	44936..45985	-	349	189022280	-	BAbS19_II00460	-	low-specificity threonine aldolase
47	 60.33	0	46628..51379	+	1583	189022281	-	BAbS19_II00470	-	Glutamate synthase amidotransferase domain protein
48	 60.48	0	51461..52915	+	484	189022282	-	BAbS19_II00480	-	glutamate synthase, small subunit
49	 58.77	0	54580..55731	-	383	189022283	-	BAbS19_II00510	-	Protein of unknown function DUF459
50	 57.42	0	55982..56500	-	172	189022284	-	BAbS19_II00520	-	outer membrane protein OprF
51	 58.47	0	56646..57731	-	361	189022285	-	BAbS19_II00530	-	type IV secretion system protein VirB11
52	 58.53	0	57715..58881	-	388	189022286	-	BAbS19_II00540	-	Glutelin
53	 57.59	0	58878..59747	-	289	189022287	-	BAbS19_II00550	-	Type IV secretion system CagX conjugation protein
54	 55.69	0	59744..60463	-	239	189022288	-	BAbS19_II00560	-	VirB8
55	 58.05	0	60466..60639	-	57	189022289	-	BAbS19_II00570	-	type IV secretion system protein VirB7 KO
56	 55.56	0	60803..61846	-	347	189022290	-	BAbS19_II00580	-	type IV secretion system protein VirB6
57	 56.07	0	62030..62746	-	238	189022291	-	BAbS19_II00590	-	type IV secretion system protein VirB5
58	 55.57	0	62751..65246	-	831	189022292	-	BAbS19_II00600	-	type IV secretion system protein VirB4
59	 55.27	0	65246..65596	-	116	189022293	-	BAbS19_II00610	-	Type IV secretory pathway, VirB3-like protein
60	 56.29	0	65610..65927	-	105	189022294	-	BAbS19_II00620	-	type IV secretion system protein VirB2 KO
61	 56.49	0	66363..67079	-	238	189022295	-	BAbS19_II00630	-	SLT domain protein
62	 59.32	0	67583..68821	-	412	189022296	-	BAbS19_II00640	-	Putative peptidoglycan binding domain 1
63	 56.94	0	69221..70114	+	297	189022297	-	BAbS19_II00650	-	UTP-glucose-1-phosphate uridylyltransferase
64	 59.90	0	70167..71717	-	516	189022298	-	BAbS19_II00660	-	hypothetical protein
65	 59.68	0	71846..72847	+	333	189022299	-	BAbS19_II00670	-	KpsF/GutQ family protein
66	 57.48	0	72970..73437	-	155	189022300	-	BAbS19_II00680	-	nodulation protein nfed, c-terminal only
67	 58.97	0	73458..74444	-	328	189022301	-	BAbS19_II00690	-	Band 7 protein
68	 58.07	0	74577..75635	-	352	189022302	-	BAbS19_II00700	-	Ferrochelatase
69	 60.37	0	75773..76153	-	126	189022303	-	BAbS19_II00710	-	lipoprotein Omp10
70	 58.23	0	76295..77740	-	481	189022304	-	BAbS19_II00720	-	homospermidine synthase
71	 59.47	0	77852..78532	-	226	189022305	-	BAbS19_II00730	-	Aminotransferase, class IV
72	 59.23	0	78466..79635	-	389	189022306	-	BAbS19_II00740	-	Anthranilate synthase component I and chorismate binding protein
73	 56.90	0	79645..81507	-	620	189022307	-	BAbS19_II00750	-	Neutral zinc metallopeptidase, zinc-binding region
74	 59.56	0	81855..83345	+	496	189022308	-	BAbS19_II00760	-	sigma-54 dependent DNA-binding response regulator
75	 63.54	+1	83620..85599	+	659	189022309	-	BAbS19_II00770	-	ATP/GTP-binding site motif A (P-loop)
76	 61.50	+1	85665..86303	-	212	189022310	-	BAbS19_II00780	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
77	 59.80	0	86462..87073	-	203	189022311	-	BAbS19_II00790	-	hypothetical protein
78	 57.41	0	87204..88121	+	305	189022312	-	BAbS19_II00800	-	Rhodanese-like protein
79	 56.48	0	88402..89157	+	251	189022313	-	BAbS19_II00810	-	Molybdenum ABC transporter, periplasmic binding protein
80	 59.97	0	89168..89854	+	228	189022314	-	BAbS19_II00820	-	Binding-protein-dependent transport systems inner membrane component
81	 61.48	+1	89851..90930	+	359	189022315	-	BAbS19_II00830	-	ABC transporter
82	 56.05	0	91000..91677	+	225	189022316	-	BAbS19_II00840	-	GCN5-related N-acetyltransferase
83	 55.39	0	91670..91873	+	67	189022317	-	BAbS19_II00850	-	hypothetical protein
84	 46.15	-2	91965..92120	+	51	189022318	-	BAbS19_II00860	-	hypothetical protein
85	 59.51	0	92815..93918	-	367	189022319	-	BAbS19_II00870	-	Delayed-early response protein/equilibrative nucleoside transporter
86	 54.33	0	93918..94622	-	234	189022320	-	BAbS19_II00880	-	hypothetical protein
87	 59.73	0	94662..95555	-	297	189022321	-	BAbS19_II00890	-	LysR substrate binding domain protein
88	 60.53	0	95559..96764	-	401	189022322	-	BAbS19_II00900	-	Amidase
89	 60.23	0	97348..98481	+	377	189022323	-	BAbS19_II00910	-	Orn/DAP/Arg decarboxylase, family 2
90	 59.74	0	98557..100275	-	572	189022324	-	BAbS19_II00920	-	Lipopolysaccharide biosynthesis
91	 55.21	0	100401..101264	-	287	189022325	-	BAbS19_II00930	-	hypothetical protein
92	 55.81	0	101261..101905	-	214	189022326	-	BAbS19_II00940	-	glycosyl transferase, WecB/TagA/CpsF family
93	 56.42	0	102022..103212	-	396	189022327	-	BAbS19_II00950	-	Glycosyl transferase
94	 54.08	-1	103348..104340	+	330	189022328	-	BAbS19_II00960	-	Glycosyl transferase, family 2
95	 56.18	0	104309..105634	+	441	189022329	-	BAbS19_II00970	-	Blood group Rhesus C/E and D polypeptide
96	 56.73	0	105648..106784	+	378	189022330	-	BAbS19_II00980	-	Oxidoreductase, N-terminal
97	 58.10	0	106781..107830	-	349	189022331	-	BAbS19_II00990	-	Eukaryotic molybdopterin oxidoreductase
98	 60.00	0	108147..109556	+	469	189022332	-	BAbS19_II01000	-	6-phosphogluconate dehydrogenase
99	 59.04	0	109652..110713	-	353	189022333	-	BAbS19_II01010	-	spermidine/putrescine ABC transporter, ATP-binding protein
100	 55.31	0	110719..111537	-	272	189022334	-	BAbS19_II01020	-	Binding-protein-dependent transport systems inner membrane component
57.69	MEAN

3.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.