IslandPath Analysis: Geobacillus thermodenitrificans NG80-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.23   STD DEV: 5.50
Geobacillus thermodenitrificans NG80-2, complete genome - 1..3550319
3392 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.15	0	209..1561	+	450	138893680	dnaA	GTNG_0001	-	chromosomal replication initiation protein
2	 46.35	0	1733..2869	+	378	138893681	-	GTNG_0002	-	DNA polymerase III subunit beta
3	 46.40	0	3059..3280	+	73	138893682	-	GTNG_0003	-	hypothetical protein
4	 47.36	0	3292..4410	+	372	138893683	recF	GTNG_0004	-	recombination protein F
5	 50.86	0	4456..6378	+	640	138893684	gyrB	GTNG_0005	-	DNA gyrase subunit B
6	 49.53	0	6531..8999	+	822	138893685	-	GTNG_0006	-	DNA gyrase subunit A
7	 46.52	0	9128..10189	+	353	138893686	-	GTNG_0007	-	hypothetical protein
8	 42.45	-1	15924..16910	-	328	138893687	yaaC	GTNG_0008	-	YaaC
9	 51.33	0	17037..18503	+	488	138893688	guaB	GTNG_0009	-	inositol-5-monophosphate dehydrogenase
10	 47.61	0	18607..19965	+	452	138893689	-	GTNG_0010	-	D-alanine carboxypeptidase
11	 55.93	+1	20095..20979	+	294	138893690	-	GTNG_0011	-	pyridoxine biosynthesis protein
12	 53.91	0	21004..21591	+	195	138893691	-	GTNG_0012	-	glutamine amidotransferase subunit PdxT
13	 52.08	0	21871..23145	+	424	138893692	-	GTNG_0013	-	seryl-tRNA synthetase
14	 53.69	0	23402..24688	-	428	138893693	-	GTNG_0014	-	spore peptidoglycan hydrolase, N-acetylglucosaminidase
15	 52.47	0	24771..25256	+	161	138893694	-	GTNG_0015	-	cytosine deaminase
16	 50.54	0	25688..27367	+	559	138893695	dnaZX	GTNG_0016	-	DNA polymerase III subunits gamma and tau
17	 40.37	-1	27390..27716	+	108	138893696	-	GTNG_0017	-	hypothetical protein
18	 47.91	0	27726..28322	+	198	138893697	recR	GTNG_0018	-	recombination protein RecR
19	 46.22	0	28346..28570	+	74	138893698	-	GTNG_0019	-	putative cytoplasmic protein
20	 45.83	0	28649..28912	+	87	138893699	-	GTNG_0020	-	inhibitor of the pro-sigma K processing machinery
21	 38.14	-2	34706..35059	+	117	138893700	csfB	GTNG_0021	-	CsfB
22	 50.52	0	35262..36698	+	478	138893701	-	GTNG_0022	-	lysine decarboxylase-like protein
23	 50.00	0	36722..37399	+	225	138893702	tmk	GTNG_0023	-	thymidylate kinase
24	 50.45	0	37431..38423	+	330	138893703	-	GTNG_0024	-	DNA polymerase III subunit delta'
25	 47.46	0	38438..39265	+	275	138893704	-	GTNG_0025	-	Signal peptidase II
26	 46.01	0	39282..39644	+	120	138893705	-	GTNG_0026	-	DNA replication intiation control protein YabA
27	 46.13	0	39705..40454	+	249	138893706	-	GTNG_0027	-	methyltransferase
28	 50.33	0	40471..41376	+	301	138893707	-	GTNG_0028	-	Corrin/porphyrin methyltransferase
29	 44.22	0	41398..41691	-	97	138893708	-	GTNG_0029	-	transition state regulator
30	 49.00	0	42085..44037	+	650	138893709	-	GTNG_0030	-	methionine-tRNA ligase/methionyl-tRNA synthetase
31	 46.17	0	44179..44949	+	256	138893710	-	GTNG_0031	-	TatD family deoxyribonuclease
32	 47.12	0	45151..46383	+	410	138893711	-	GTNG_0032	-	hypothetical protein
33	 41.21	-1	46262..46642	+	126	138893712	-	GTNG_0033	-	hypothetical protein
34	 52.96	0	46671..47210	+	179	138893713	-	GTNG_0034	-	ribonuclease M5
35	 50.79	0	47203..48084	+	293	138893714	ksgA	GTNG_0035	-	dimethyladenosine transferase
36	 49.33	0	48178..49077	+	299	138893715	yabG	GTNG_0036	-	sporulation-specific protease YabG
37	 44.57	0	49260..49517	+	85	138893716	-	GTNG_0037	-	hypothetical protein
38	 53.33	0	49871..50050	+	59	138893717	-	GTNG_0038	-	small acid-soluble spore protein, minoralpha/beta-type SASP
39	 52.92	0	50288..51160	+	290	138893718	-	GTNG_0039	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
40	 48.48	0	51215..52039	+	274	138893719	-	GTNG_0040	-	purine operon repressor
41	 43.73	0	52092..52466	+	124	138893720	-	GTNG_0041	-	translation initiation inhibitor
42	 52.23	0	52591..52881	+	96	138893721	-	GTNG_0042	-	regulatory protein SpoVG
43	 50.72	0	53014..54393	+	459	138893722	-	GTNG_0043	-	glucosamine-1-phosphate acetyltransferase
44	 49.05	0	54406..55353	+	315	138893723	-	GTNG_0044	-	ribose-phosphate pyrophosphokinase
45	 52.45	0	55429..56061	+	210	138893724	-	GTNG_0045	-	50S ribosomal protein L25/general stress protein Ctc
46	 47.95	0	56122..56682	+	186	138893725	-	GTNG_0046	-	peptidyl-tRNA hydrolase
47	 41.56	-1	56785..57015	+	76	138893726	-	GTNG_0047	-	hypothetical protein
48	 49.26	0	57105..60638	+	1177	138893727	-	GTNG_0048	-	transcription-repair coupling factor
49	 49.35	0	60861..61397	+	178	138893728	-	GTNG_0049	-	stage V sporulation protein T
50	 52.79	0	61626..63182	+	518	138893729	-	GTNG_0050	-	stage V sporulation protein B-like protein
51	 51.40	0	63189..64649	+	486	138893730	-	GTNG_0051	-	tetrapyrrole methylase family protein, MazG family protein
52	 44.33	0	64661..64942	+	93	138893731	-	GTNG_0052	-	heat shock protein 15
53	 42.31	-1	65059..65370	+	103	138893732	-	GTNG_0053	-	hypothetical protein
54	 48.50	0	65367..65999	+	210	138893733	-	GTNG_0054	-	spore cortex biosynthesis protein
55	 44.89	0	66015..66386	+	123	138893734	-	GTNG_0055	-	cell-division initiation protein
56	 50.63	0	66507..66905	+	132	138893735	-	GTNG_0056	-	hypothetical protein
57	 48.10	0	67440..69917	+	825	138893736	-	GTNG_0057	-	Serine phosphatase
58	 53.44	0	69984..70724	+	246	138893737	-	GTNG_0058	-	hypothetical protein
59	 54.60	0	70687..71664	+	325	138893738	-	GTNG_0059	-	Serine/threonine-protein kinase
60	 49.39	0	71720..73114	+	464	138893739	mesJ	GTNG_0060	-	cell cycle protein MesJ
61	 43.59	-1	73126..73671	+	181	138893740	-	GTNG_0061	-	hypoxanthine-guanine phosphoribosyltransferase
62	 50.58	0	73766..75661	+	631	138893741	-	GTNG_0062	-	cell-division protein and general stress protein(class III heat-shock)
63	 46.72	0	75893..76669	+	258	138893742	coaA	GTNG_0063	-	pantothenate kinase
64	 51.85	0	76678..77568	+	296	138893743	hslO	GTNG_0064	-	Hsp33-like chaperonin
65	 51.78	0	77655..78581	+	308	138893744	-	GTNG_0065	-	O-acetyl-L-serine sulfhydrylase
66	 53.09	0	78696..80117	+	473	138893745	-	GTNG_0066	-	P-aminobenzoate synthase
67	 48.19	0	80120..80698	+	192	138893746	-	GTNG_0067	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
68	 50.62	0	80698..81582	+	294	138893747	-	GTNG_0068	-	4-amino-4-deoxychorismate lyase
69	 50.53	0	81579..82433	+	284	138893748	-	GTNG_0069	-	dihydropteroate synthase
70	 51.54	0	82396..82785	+	129	138893749	-	GTNG_0070	-	dihydroneopterin aldolase
71	 43.94	0	82786..83313	+	175	138893750	-	GTNG_0071	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridinepyrophosphokinase
72	 48.65	0	83265..83486	+	73	138893751	-	GTNG_0072	-	Xre family transcriptional regulator
73	 49.80	0	83502..84503	+	333	138893752	-	GTNG_0073	-	nitrogen regulation transcriptional regulator
74	 47.54	0	84588..86072	+	494	138893753	lysS	GTNG_0074	-	lysyl-tRNA synthetase
75	 43.25	-1	92771..93244	+	157	138893754	-	GTNG_0075	-	transcriptional regulator
76	 48.09	0	93259..93807	+	182	138893755	-	GTNG_0076	-	ClpC ATPase
77	 49.36	0	93812..94903	+	363	138893756	-	GTNG_0077	-	ATP:guanido phosphotransferase
78	 51.56	0	94900..97335	+	811	138893757	-	GTNG_0078	-	negative regulator of genetic competence ClpC/MecB
79	 53.86	0	97410..98783	+	457	138893758	-	GTNG_0079	-	DNA repair protein RadA
80	 45.84	0	98989..100083	+	364	138893759	-	GTNG_0080	-	membrane-associated protein
81	 52.40	0	100105..100791	+	228	138893760	ispD	GTNG_0081	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
82	 53.83	0	100806..101288	+	160	138893761	ispF	GTNG_0082	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
83	 50.34	0	101498..102967	+	489	138893762	-	GTNG_0083	-	transfer RNA-Gln synthetase
84	 48.30	0	103341..104015	+	224	138893763	-	GTNG_0084	-	Serine acetyltransferase
85	 49.50	0	103993..105396	+	467	138893764	cysS	GTNG_0085	-	cysteinyl-tRNA synthetase
86	 53.03	0	105427..105822	+	131	138893765	-	GTNG_0086	-	hypothetical protein
87	 57.22	+1	105819..106559	+	246	138893766	-	GTNG_0087	-	23S rRNA methyltransferase
88	 44.83	0	106563..107075	+	170	138893767	-	GTNG_0088	-	putative cytoplasmic protein
89	 46.70	0	107145..107795	+	216	138893768	-	GTNG_0089	-	RNA polymerase factor sigma-70
90	 50.67	0	107902..108051	+	49	138893769	rpmG	GTNG_0090	-	50S ribosomal protein L33
91	 44.26	0	108092..108274	+	60	138893770	secE	GTNG_0091	-	preprotein translocase subunit SecE
92	 45.51	0	108382..108915	+	177	138893771	nusG	GTNG_0092	-	transcription antitermination protein NusG
93	 50.23	0	109156..109581	+	141	138893772	rplK	GTNG_0093	-	50S ribosomal protein L11
94	 47.44	0	109784..110485	+	233	138893773	rplA	GTNG_0094	-	50S ribosomal protein L1
95	 52.69	0	110736..111236	+	166	138893774	-	GTNG_0095	-	ribosomal protein L10
96	 41.94	-1	111284..111655	+	123	138893775	rplL	GTNG_0096	-	50S ribosomal protein L7/L12
97	 49.09	0	111761..112363	+	200	138893776	-	GTNG_0097	-	16S rRNA m(2)G 1207 methyltransferase
98	 50.52	0	112769..116341	+	1190	138893777	rpoB	GTNG_0098	-	DNA-directed RNA polymerase subunit beta
99	 52.49	0	116399..120052	+	1217	138893778	-	GTNG_0099	-	DNA-directed RNA polymerase subunit beta'
100	 46.99	0	120189..120437	+	82	138893779	-	GTNG_0100	-	50S ribosomal protein L7AE
49.23	MEAN

5.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.