IslandPath Analysis: Pyrobaculum calidifontis JCM 11548



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.17   STD DEV: 5.24
Pyrobaculum calidifontis JCM 11548, complete genome - 1..2009313
2149 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.00	-2	9..308	+	99	126458629	-	Pcal_0001	-	hypothetical protein
2	 46.72	-1	379..1551	+	390	126458630	cdc6	Pcal_0002	-	cell division control protein 6
3	 42.71	-2	1548..1835	+	95	126458631	-	Pcal_0003	-	regulatory protein, ArsR
4	 48.26	-1	1830..3095	-	421	126458632	-	Pcal_0004	-	replication factor C large subunit
5	 50.25	-1	3095..4075	-	326	126458633	rfc	Pcal_0005	-	replication factor C small subunit
6	 49.26	-1	4106..4777	-	223	126458634	-	Pcal_0006	-	30S ribosomal protein S7P
7	 46.30	-2	4799..5014	-	71	126458635	-	Pcal_0007	-	hypothetical protein
8	 50.22	-1	5083..5307	-	74	126458636	-	Pcal_0008	-	regulatory protein, Crp
9	 48.37	-1	5329..5727	-	132	126458637	-	Pcal_0009	-	hypothetical protein
10	 50.39	-1	5845..6618	-	257	126458638	-	Pcal_0010	-	putative circadian clock protein, KaiC
11	 52.34	0	6661..7044	-	127	126458639	-	Pcal_0011	-	cytidine deaminase
12	 38.19	-2	7057..8004	+	315	126458640	-	Pcal_0012	-	hypothetical protein
13	 51.98	0	8023..8805	+	260	126458641	-	Pcal_0013	-	short-chain dehydrogenase/reductase SDR
14	 52.36	0	8802..10094	-	430	126458642	glyA	Pcal_0014	-	serine hydroxymethyltransferase
15	 55.01	0	10125..10853	-	242	126458643	-	Pcal_0015	-	molybdenum cofactor biosynthesis protein (moaC)
16	 51.52	-1	10850..11146	-	98	126458644	-	Pcal_0016	-	hypothetical protein
17	 56.09	0	11209..12267	-	352	126458645	-	Pcal_0017	-	isopentenyl pyrophosphate isomerase
18	 57.41	0	12267..13001	-	244	126458646	rpl2p	Pcal_0018	-	50S ribosomal protein L2P
19	 50.93	-1	13328..13543	+	71	126458647	rps17E	Pcal_0019	-	30S ribosomal protein S17e
20	 53.62	0	13546..14235	+	229	126458648	-	Pcal_0020	-	peptidylprolyl isomerase, FKBP-type
21	 54.62	0	14264..14869	+	201	126458649	-	Pcal_0021	-	proteasome endopeptidase complex
22	 56.63	0	14872..16107	+	411	126458650	-	Pcal_0022	-	enolase
23	 49.51	-1	16157..16564	+	135	126458651	-	Pcal_0023	-	ModE family transcriptional regulator
24	 50.00	-1	16811..17740	-	309	126458652	-	Pcal_0024	-	GTP cyclohydrolase subunit MoaA
25	 54.47	0	18142..19248	+	368	126458653	-	Pcal_0025	-	protein kinase
26	 56.00	0	19286..19735	+	149	126458654	-	Pcal_0026	-	FHA domain-containing protein
27	 52.63	0	19769..20395	+	208	126458655	rps2P	Pcal_0027	-	30S ribosomal protein S2
28	 55.32	0	20428..21273	+	281	126458656	-	Pcal_0028	-	hypothetical protein
29	 59.08	0	21253..22623	-	456	126458657	-	Pcal_0029	-	pyruvate kinase
30	 55.07	0	22625..24529	-	634	126458658	-	Pcal_0030	-	beta-lactamase domain-containing protein
31	 57.81	0	24812..26233	-	473	126458659	-	Pcal_0031	-	cysteinyl-tRNA synthetase
32	 62.29	0	26406..29927	-	1173	126458660	-	Pcal_0032	-	hypothetical protein
33	 54.10	0	29959..31899	+	646	126458661	-	Pcal_0033	-	hypothetical protein
34	 53.66	0	31940..39925	+	2661	126458662	-	Pcal_0034	-	hypothetical protein
35	 61.20	0	39984..40568	+	194	126458663	-	Pcal_0035	-	AMMECR1 domain-containing protein
36	 63.80	+1	40597..41397	+	266	126458664	-	Pcal_0036	-	hypothetical protein
37	 58.76	0	41378..41908	+	176	126458665	-	Pcal_0037	-	adenylate cyclase
38	 54.44	0	42120..42929	-	269	126458666	-	Pcal_0038	-	hypothetical protein
39	 59.19	0	42958..44709	-	583	126458667	-	Pcal_0039	-	ATP-dependent DNA ligase
40	 54.03	0	44748..45293	-	181	126458668	-	Pcal_0040	-	hypothetical protein
41	 62.19	0	45295..46209	+	304	126458669	-	Pcal_0041	-	ribokinase-like domain-containing protein
42	 51.65	-1	46232..46564	+	110	126458670	-	Pcal_0042	-	hypothetical protein
43	 56.43	0	46655..47338	+	227	126458671	-	Pcal_0043	-	nucleotidyl transferase
44	 54.91	0	47383..48105	+	240	126458672	-	Pcal_0044	-	hypothetical protein
45	 53.63	0	48102..48638	+	178	126458673	-	Pcal_0045	-	hypothetical protein
46	 64.74	+1	48635..48997	-	120	126458674	-	Pcal_0046	-	hypothetical protein
47	 61.39	0	49022..50083	+	353	126458675	-	Pcal_0047	-	hypothetical protein
48	 61.15	0	50114..51001	+	295	126458676	-	Pcal_0048	-	abortive infection protein
49	 50.17	-1	51029..51628	+	199	126458677	-	Pcal_0049	-	PaREP1/PaREP8 domain-contain protein
50	 48.40	-1	52166..52477	-	103	126458678	-	Pcal_0050	-	hypothetical protein
51	 62.75	+1	52453..53346	-	297	126458679	-	Pcal_0051	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
52	 50.88	-1	53350..53691	-	113	126458680	-	Pcal_0052	-	hypothetical protein
53	 52.56	0	54062..54373	+	103	126458681	-	Pcal_0053	-	50S ribosomal protein L14e
54	 58.38	0	54370..55371	+	333	126458682	-	Pcal_0054	-	H/ACA RNA-protein complex component Cbf5p
55	 54.31	0	55407..55673	+	88	126458683	-	Pcal_0055	-	hypothetical protein
56	 60.40	0	55670..56164	+	164	126458684	-	Pcal_0056	-	hypothetical protein
57	 54.90	0	56186..56644	+	152	126458685	-	Pcal_0057	-	hypothetical protein
58	 57.56	0	56641..57573	+	310	126458686	-	Pcal_0058	-	oxidoreductase domain-containing protein
59	 55.25	0	57865..58407	+	180	126458687	-	Pcal_0059	-	AAA ATPase
60	 57.17	0	58394..58972	-	192	126458688	-	Pcal_0060	-	abortive infection protein
61	 57.32	0	58999..59469	+	156	126458689	-	Pcal_0061	-	hypothetical protein
62	 58.05	0	59459..60247	-	262	126458690	-	Pcal_0062	-	competence damage-inducible protein A
63	 59.91	0	60256..61113	-	285	126458691	-	Pcal_0063	-	hypothetical protein
64	 53.28	0	61160..61570	+	136	126458692	-	Pcal_0064	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
65	 56.87	0	61769..62350	-	193	126458693	-	Pcal_0065	-	peroxiredoxin-like protein
66	 54.24	0	62370..63029	-	219	126458694	-	Pcal_0066	-	HhH-GPD family protein
67	 56.79	0	63077..63562	+	161	126458695	-	Pcal_0067	-	hypothetical protein
68	 54.91	0	63606..64379	+	257	126458696	-	Pcal_0068	-	hypothetical protein
69	 54.65	0	64428..65900	+	490	126458697	-	Pcal_0069	-	carboxypeptidase Taq
70	 56.34	0	65872..66549	-	225	126458698	-	Pcal_0070	-	hypothetical protein
71	 52.60	0	66564..67025	+	153	126458699	-	Pcal_0071	-	phosphopantetheine adenylyltransferase
72	 59.98	0	67002..68318	-	438	126458700	-	Pcal_0072	-	hypothetical protein
73	 51.88	-1	68406..68777	-	123	126458701	-	Pcal_0073	-	hypothetical protein
74	 58.77	0	68792..69589	-	265	126458702	-	Pcal_0074	-	hypothetical protein
75	 60.70	0	69794..70564	+	256	126458703	-	Pcal_0075	-	prephenate dehydratase
76	 57.07	0	70539..71090	-	183	126458704	-	Pcal_0076	-	PaREP1 domain-containing protein
77	 56.52	0	71152..73044	+	630	126458705	-	Pcal_0077	-	aldehyde ferredoxin oxidoreductase
78	 63.99	+1	73027..75153	-	708	126458706	-	Pcal_0078	-	DEAD/DEAH box helicase domain-containing protein
79	 61.90	0	75249..76571	+	440	126458707	-	Pcal_0079	-	hypothetical protein
80	 64.85	+1	76568..77008	+	146	126458708	-	Pcal_0080	-	hypothetical protein
81	 58.47	0	77005..80445	+	1146	126458709	-	Pcal_0081	-	hypothetical protein
82	 58.95	0	80442..81128	+	228	126458710	-	Pcal_0082	-	hypothetical protein
83	 63.83	+1	81125..81688	+	187	126458711	-	Pcal_0083	-	hypothetical protein
84	 59.80	0	81749..83788	+	679	126458712	-	Pcal_0084	-	replicative DNA helicase Mcm
85	 64.75	+1	83850..84995	-	381	126458713	-	Pcal_0085	-	hypothetical protein
86	 65.95	+1	85025..85585	-	186	126458714	-	Pcal_0086	-	methyltransferase type 11
87	 65.20	+1	86308..87738	+	476	126458715	-	Pcal_0087	-	hypothetical protein
88	 63.32	+1	87763..89196	+	477	126458716	-	Pcal_0088	-	radical SAM domain-containing protein
89	 62.28	0	89227..90228	+	333	126458717	-	Pcal_0089	-	histidinol phosphate aminotransferase
90	 63.41	+1	90197..92779	-	860	126458718	-	Pcal_0090	-	hypothetical protein
91	 52.38	0	92869..93057	-	62	126458719	-	Pcal_0091	-	PaREP6 domain-containing protein/PaREP6 domain-containing protein
92	 57.26	0	93630..94565	-	311	126458720	-	Pcal_0093	-	hypothetical protein
93	 54.80	0	94691..95044	+	117	126458721	-	Pcal_0094	-	hypothetical protein
94	 43.56	-2	95095..95622	+	175	126458722	-	Pcal_0095	-	hypothetical protein
95	 66.67	+1	95652..96278	+	208	126458723	-	Pcal_0096	-	hypothetical protein
96	 53.93	0	96356..96724	-	122	126458724	-	Pcal_0097	-	hypothetical protein
97	 58.15	0	96892..98007	+	371	126458725	-	Pcal_0098	-	hypothetical protein
98	 46.31	-2	98585..99031	+	148	126458726	-	Pcal_0099	-	hypothetical protein
99	 64.90	+1	99193..100434	-	413	126458727	-	Pcal_0100	-	hypothetical protein
100	 56.55	0	101561..101827	-	88	126458728	-	Pcal_0101	-	hypothetical protein
57.17	MEAN

5.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.