IslandPath Analysis: Alkaliphilus metalliredigens QYMF



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.81   STD DEV: 3.99
Alkaliphilus metalliredigens QYMF, complete genome - 1..4929566
4625 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.60	0	50..1396	+	448	150387854	dnaA	Amet_0001	-	chromosomal replication initiation protein
2	 33.42	0	1629..2735	+	368	150387855	-	Amet_0002	-	DNA polymerase III subunit beta
3	 29.05	-1	2819..3028	+	69	150387856	-	Amet_0003	-	RNA-binding S4 domain-containing protein
4	 32.16	-1	3115..4221	+	368	150387857	-	Amet_0004	-	DNA replication and repair protein RecF
5	 30.56	-1	4310..4597	+	95	150387858	-	Amet_0005	-	hypothetical protein
6	 35.53	0	4652..6559	+	635	150387859	-	Amet_0006	-	DNA gyrase, B subunit
7	 33.17	0	6576..9068	+	830	150387860	-	Amet_0007	-	DNA gyrase, A subunit
8	 28.93	-1	9333..9650	+	105	150387861	-	Amet_0008	-	anti-sigma-factor antagonist
9	 32.86	0	9691..10116	+	141	150387862	-	Amet_0009	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
10	 31.34	-1	10116..10916	+	266	150387863	-	Amet_0010	-	RinA family phage transcriptional regulator
11	 20.26	-2	16755..16907	+	50	150387864	-	Amet_0011	-	hypothetical protein
12	 26.75	-2	17117..17344	+	75	150387865	-	Amet_0012	-	hypothetical protein
13	 38.49	0	17548..18012	+	154	150387866	-	Amet_0013	-	hypothetical protein
14	 37.15	0	18180..19043	+	287	150387867	-	Amet_0014	-	hypothetical protein
15	 35.42	0	19183..20526	+	447	150387868	-	Amet_0015	-	glycine dehydrogenase (decarboxylating)
16	 38.04	0	20526..21971	+	481	150387869	-	Amet_0016	-	glycine dehydrogenase subunit 2
17	 33.00	0	27844..28755	+	303	150387870	-	Amet_0017	-	quinolinate synthetase complex, A subunit
18	 34.29	0	28770..30332	+	520	150387871	-	Amet_0018	-	L-aspartate oxidase
19	 34.64	0	30355..31194	+	279	150387872	-	Amet_0019	-	nicotinate-nucleotide pyrophosphorylase
20	 38.54	0	31205..31723	+	172	150387873	-	Amet_0020	-	3H domain-containing protein
21	 40.57	0	31739..32788	+	349	150387874	-	Amet_0021	-	phosphotransferase system, EIIC
22	 37.37	0	32891..35689	+	932	150387875	-	Amet_0022	-	hypothetical protein
23	 31.40	-1	35753..35959	-	68	150387876	-	Amet_0023	-	hypothetical protein
24	 38.49	0	36527..37807	+	426	150387877	-	Amet_0024	-	seryl-tRNA synthetase
25	 31.56	-1	38018..38752	+	244	150387878	-	Amet_0025	-	hypothetical protein
26	 42.98	+1	38949..39404	+	151	150387879	-	Amet_0026	-	CMP/dCMP deaminase, zinc-binding
27	 36.01	0	40091..40726	+	211	150387880	-	Amet_0027	-	SirA family protein
28	 37.08	0	40741..41007	+	88	150387881	-	Amet_0028	-	hypothetical protein
29	 35.25	0	41021..41905	+	294	150387882	-	Amet_0029	-	MscS mechanosensitive ion channel
30	 38.46	0	42014..42208	+	64	150387883	-	Amet_0030	-	hypothetical protein
31	 37.19	0	42372..43565	+	397	150387884	-	Amet_0031	-	GntR family transcriptional regulator
32	 33.33	0	43948..44232	+	94	150387885	-	Amet_0032	-	ribosomal protein S6
33	 37.19	0	44256..44696	+	146	150387886	-	Amet_0033	-	single-strand binding protein
34	 29.00	-1	44715..44945	+	76	150387887	-	Amet_0034	-	ribosomal protein S18
35	 39.95	0	45115..46218	+	367	150387888	-	Amet_0035	-	YibE/F family protein
36	 33.57	0	46365..46781	+	138	150387889	-	Amet_0036	-	hypothetical protein
37	 36.65	0	47045..47647	+	200	150387890	-	Amet_0037	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
38	 39.67	0	47781..48395	+	204	150387891	-	Amet_0038	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
39	 39.37	0	59604..60812	-	402	150387892	-	Amet_0039	-	acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
40	 39.58	0	60905..62329	-	474	150387893	-	Amet_0040	-	C4-dicarboxylate anaerobic carrier
41	 40.23	0	62690..64081	+	463	150387894	-	Amet_0041	-	amidohydrolase 3
42	 41.45	+1	64185..65354	+	389	150387895	-	Amet_0042	-	amidohydrolase
43	 36.98	0	65576..67054	+	492	150387896	-	Amet_0043	-	methyl-accepting chemotaxis sensory transducer
44	 34.22	0	67152..67490	+	112	150387897	-	Amet_0044	-	hypothetical protein
45	 37.04	0	67581..67796	+	71	150387898	-	Amet_0045	-	heavy metal transport/detoxification protein
46	 43.26	+1	67921..68937	-	338	150387899	-	Amet_0046	-	aminodeoxychorismate lyase
47	 37.56	0	69263..70279	+	338	150387900	-	Amet_0047	-	UBA/THIF-type NAD/FAD binding protein
48	 37.60	0	70432..71064	+	210	150387901	-	Amet_0048	-	SNARE associated Golgi protein
49	 42.56	+1	71109..71585	-	158	150387902	-	Amet_0049	-	AsnC family transcriptional regulator
50	 38.56	0	71582..72040	-	152	150387903	-	Amet_0050	-	AsnC family transcriptional regulator
51	 45.54	+2	72033..73040	-	335	150387904	-	Amet_0051	-	radical SAM domain-containing protein
52	 43.09	+1	73037..74245	-	402	150387905	-	Amet_0052	-	radical SAM domain-containing protein
53	 38.79	0	74566..75975	+	469	150387906	-	Amet_0053	-	hypothetical protein
54	 32.89	0	76126..76353	+	75	150387907	-	Amet_0054	-	hypothetical protein
55	 33.58	0	76435..76839	+	134	150387908	-	Amet_0055	-	SirA family protein
56	 38.38	0	76860..77771	+	303	150387909	-	Amet_0056	-	cysteine synthase A
57	 36.33	0	77883..79118	+	411	150387910	-	Amet_0057	-	cysteine synthase
58	 40.39	0	79684..80958	+	424	150387911	-	Amet_0058	-	glutamyl-tRNA reductase
59	 41.70	+1	80971..81699	+	242	150387912	-	Amet_0059	-	siroheme synthase
60	 44.48	+1	81632..82582	+	316	150387913	-	Amet_0060	-	porphobilinogen deaminase
61	 45.13	+2	82626..84134	+	502	150387914	-	Amet_0061	-	uroporphyrin-III C-methyltransferase
62	 42.36	+1	84135..85109	+	324	150387915	-	Amet_0062	-	delta-aminolevulinic acid dehydratase
63	 42.63	+1	85091..86413	+	440	150387916	-	Amet_0063	-	glutamate-1-semialdehyde-2,1-aminomutase
64	 39.20	0	86836..87210	+	124	150387917	-	Amet_0064	-	cobalamin (vitamin B12) biosynthesis CbiX protein
65	 43.23	+1	87298..88701	+	467	150387918	-	Amet_0065	-	cobyrinic acid a,c-diamide synthase
66	 42.91	+1	88804..89325	+	173	150387919	-	Amet_0066	-	hypothetical protein
67	 41.50	+1	89315..90061	+	248	150387920	-	Amet_0067	-	hypothetical protein
68	 40.30	0	90100..90975	+	291	150387921	-	Amet_0068	-	GHMP kinase
69	 43.96	+1	90992..91612	+	206	150387922	-	Amet_0069	-	precorrin-8X methylmutase CbiC/CobH
70	 44.53	+1	91627..92760	+	377	150387923	-	Amet_0070	-	cobalamin biosynthesis protein CbiD
71	 40.10	0	92753..93373	+	206	150387924	-	Amet_0071	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
72	 44.33	+1	93366..93974	+	202	150387925	-	Amet_0072	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
73	 40.39	0	93964..94686	+	240	150387926	-	Amet_0073	-	precorrin-2 C20-methyltransferase
74	 44.40	+1	94679..95446	+	255	150387927	-	Amet_0074	-	precorrin-4 C11-methyltransferase
75	 43.94	+1	95443..96507	+	354	150387928	-	Amet_0075	-	cobalamin (vitamin B12) biosynthesis CbiG protein
76	 44.80	+2	96579..97319	+	246	150387929	-	Amet_0076	-	precorrin-3B C17-methyltransferase
77	 43.63	+1	97316..98092	+	258	150387930	-	Amet_0077	-	precorrin-6x reductase
78	 34.93	0	98625..99125	+	166	150387931	-	Amet_0078	-	hypothetical protein
79	 32.26	-1	99267..99452	+	61	150387932	-	Amet_0079	-	hypothetical protein
80	 36.72	0	99506..99682	-	58	150387933	-	Amet_0080	-	hypothetical protein
81	 39.20	0	99846..101276	+	476	150387934	-	Amet_0081	-	Orn/Lys/Arg decarboxylase, major region
82	 39.62	0	101366..102001	+	211	150387935	-	Amet_0082	-	dTMP kinase
83	 42.42	+1	101998..102327	+	109	150387936	-	Amet_0083	-	hypothetical protein
84	 35.66	0	102347..103336	+	329	150387937	-	Amet_0084	-	DNA polymerase III, delta prime subunit
85	 37.35	0	103330..104226	+	298	150387938	-	Amet_0085	-	PSP1 domain-containing protein
86	 38.26	0	104393..105001	+	202	150387939	-	Amet_0086	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
87	 37.10	0	105104..105847	+	247	150387940	-	Amet_0087	-	putative RNA polymerase sigma factor SigI
88	 38.30	0	105840..106865	+	341	150387941	-	Amet_0088	-	hypothetical protein
89	 34.52	0	106957..107799	+	280	150387942	-	Amet_0089	-	hypothetical protein
90	 37.37	0	107951..108718	+	255	150387943	-	Amet_0090	-	methyltransferase small
91	 40.12	0	108711..109550	+	279	150387944	-	Amet_0091	-	uroporphyrin-III C/tetrapyrrole methyltransferase
92	 31.67	-1	109662..109901	-	79	150387945	-	Amet_0092	-	AbrB family transcriptional regulator
93	 36.93	0	110289..111707	+	472	150387946	-	Amet_0093	-	polynucleotide adenylyltransferase/metal dependent phosphohydrolase
94	 39.68	0	111825..113273	-	482	150387947	-	Amet_0094	-	putative nicotinate phosphoribosyltransferase
95	 40.97	+1	113529..114104	+	191	150387948	-	Amet_0095	-	nucleoside recognition domain-containing protein
96	 43.02	+1	114104..114640	+	178	150387949	-	Amet_0096	-	nucleoside recognition domain-containing protein
97	 47.71	+2	114705..115664	+	319	150387950	-	Amet_0097	-	peptidase S58, DmpA
98	 24.51	-2	115941..116507	-	188	150387951	-	Amet_0098	-	accessory gene regulator B
99	 36.56	0	116857..117228	+	123	150387952	-	Amet_0099	-	bacteriocin
100	 24.86	-2	117324..119636	+	770	150387953	-	Amet_0100	-	hypothetical protein
36.81	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.