IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.31   STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.32	0	146..1348	+	400	161527513	-	Nmar_0001	-	cell division control protein 6 family protein
2	 36.24	0	1325..2770	-	481	161527514	-	Nmar_0002	-	DNA polymerase II small subunit
3	 36.49	0	2881..3387	+	168	161527515	-	Nmar_0003	-	hypothetical protein
4	 33.00	0	3463..4359	+	298	161527516	-	Nmar_0004	-	hypothetical protein
5	 33.47	0	4356..5072	-	238	161527517	-	Nmar_0005	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
6	 30.89	0	5075..5566	-	163	161527518	-	Nmar_0006	-	hypothetical protein
7	 33.33	0	5639..7168	+	509	161527519	-	Nmar_0007	-	peptidylprolyl isomerase
8	 34.29	0	7169..8524	-	451	161527520	-	Nmar_0008	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
9	 33.79	0	8594..9244	-	216	161527521	-	Nmar_0009	-	hypothetical protein
10	 36.79	0	9370..9861	+	163	161527522	-	Nmar_0010	-	heat shock protein HSP20
11	 36.69	0	9889..12030	+	713	161527523	-	Nmar_0011	-	AAA family ATPase, CDC48 subfamily protein
12	 31.53	0	12340..12783	+	147	161527524	-	Nmar_0012	-	hypothetical protein
13	 37.02	0	12800..13720	-	306	161527525	-	Nmar_0013	-	transcription factor TFIIB cyclin-related
14	 32.92	0	13897..14136	-	79	161527526	-	Nmar_0014	-	hypothetical protein
15	 35.43	0	14212..14592	+	126	161527527	-	Nmar_0015	-	camphor resistance CrcB protein
16	 31.58	0	14599..14826	+	75	161527528	-	Nmar_0016	-	hypothetical protein
17	 31.50	0	14827..15099	-	90	161527529	-	Nmar_0017	-	hypothetical protein
18	 32.00	0	15531..15830	+	99	161527530	-	Nmar_0018	-	hypothetical protein
19	 33.97	0	15827..16771	-	314	161527531	-	Nmar_0019	-	hypothetical protein
20	 37.31	0	16889..17794	+	301	161527532	-	Nmar_0020	-	transcription factor TFIIB cyclin-related
21	 35.26	0	17795..19249	-	484	161527533	-	Nmar_0021	-	sodium/hydrogen exchanger
22	 31.31	0	19365..19907	+	180	161527534	-	Nmar_0022	-	hypothetical protein
23	 37.04	0	19920..20459	+	179	161527535	-	Nmar_0023	-	adenylylsulfate kinase
24	 31.74	0	20451..21266	-	271	161527536	-	Nmar_0024	-	inositol monophosphatase
25	 31.40	0	21275..21481	-	68	161527537	-	Nmar_0025	-	hypothetical protein
26	 32.72	0	21522..22331	-	269	161527538	-	Nmar_0026	-	short-chain dehydrogenase/reductase SDR
27	 29.37	-1	22532..22960	-	142	161527539	-	Nmar_0027	-	hypothetical protein
28	 27.17	-2	22998..23549	-	183	161527540	-	Nmar_0028	-	hypothetical protein
29	 37.35	0	23675..24322	+	215	161527541	-	Nmar_0029	-	hypothetical protein
30	 32.44	0	24466..25470	+	334	161527542	-	Nmar_0030	-	hypothetical protein
31	 36.92	0	25473..25946	-	157	161527543	-	Nmar_0031	-	hypothetical protein
32	 37.38	0	26047..26688	-	213	161527544	-	Nmar_0032	-	hypothetical protein
33	 41.38	+2	27032..27292	+	86	161527545	-	Nmar_0033	-	hypothetical protein
34	 36.51	0	27296..28303	+	335	161527546	-	Nmar_0034	-	hypothetical protein
35	 35.61	0	28300..28650	+	116	161527547	-	Nmar_0035	-	hypothetical protein
36	 39.49	+1	28710..28904	+	64	161527548	-	Nmar_0036	-	hypothetical protein
37	 33.75	0	28946..29659	+	237	161527549	-	Nmar_0037	-	radical SAM domain-containing protein
38	 38.17	+1	29723..30280	+	185	161527550	-	Nmar_0038	-	GTP cyclohydrolase I
39	 34.59	0	30258..30575	+	105	161527551	-	Nmar_0039	-	hypothetical protein
40	 34.81	0	30578..31252	-	224	161527552	-	Nmar_0040	-	ExsB family protein
41	 36.90	0	31256..32179	-	307	161527553	-	Nmar_0041	-	homoserine kinase
42	 36.36	0	32179..32937	-	252	161527554	-	Nmar_0042	-	GTPase
43	 35.99	0	33030..34121	+	363	161527555	-	Nmar_0043	-	hypothetical protein
44	 33.96	0	34156..34950	+	264	161527556	-	Nmar_0044	-	short-chain dehydrogenase/reductase SDR
45	 31.11	0	34958..35362	-	134	161527557	-	Nmar_0045	-	hypothetical protein
46	 34.62	0	35374..35685	-	103	161527558	-	Nmar_0046	-	hypothetical protein
47	 33.74	0	35839..37074	-	411	161527559	-	Nmar_0047	-	hypothetical protein
48	 30.84	0	37114..38277	-	387	161527560	-	Nmar_0048	-	thiamine biosynthesis ATP pyrophosphatase-like protein
49	 35.95	0	38305..39030	+	241	161527561	-	Nmar_0049	-	adenylylsulfate reductase, thioredoxin dependent
50	 35.43	0	39032..40174	+	380	161527562	-	Nmar_0050	-	sulfate adenylyltransferase
51	 39.04	+1	40206..40871	+	221	161527563	-	Nmar_0051	-	hypothetical protein
52	 33.03	0	40855..41511	-	218	161527564	-	Nmar_0052	-	DNA-(apurinic or apyrimidinic site) lyase
53	 34.98	0	41561..42715	+	384	161527565	-	Nmar_0053	-	hypothetical protein
54	 34.11	0	42712..43098	+	128	161527566	-	Nmar_0054	-	hypothetical protein
55	 32.62	0	43073..45031	-	652	161527567	-	Nmar_0055	-	hypothetical protein
56	 36.06	0	45126..45602	+	158	161527568	-	Nmar_0056	-	hypothetical protein
57	 34.52	0	45627..46217	+	196	161527569	-	Nmar_0057	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
58	 33.20	0	46253..46975	+	240	161527570	-	Nmar_0058	-	precorrin-2 C20-methyltransferase
59	 32.04	0	46968..47738	+	256	161527571	-	Nmar_0059	-	precorrin-4 C11-methyltransferase
60	 26.72	-2	47719..48474	-	251	161527572	-	Nmar_0060	-	glutamate racemase
61	 43.16	+2	48580..49230	+	216	161527573	-	Nmar_0061	-	hypothetical protein
62	 29.97	-1	49278..50438	-	386	161527574	-	Nmar_0062	-	glycosyl transferase family protein
63	 33.61	0	50600..52057	-	485	161527575	-	Nmar_0063	-	glycyl-tRNA synthetase
64	 31.90	0	52088..52927	-	279	161527576	-	Nmar_0064	-	apurinic endonuclease Apn1
65	 33.72	0	53013..54038	+	341	161527577	-	Nmar_0065	-	DNA primase, large subunit
66	 28.79	-1	54038..55159	+	373	161527578	-	Nmar_0066	-	DNA primase small subunit
67	 35.01	0	55201..58062	+	953	161527579	-	Nmar_0067	-	hypothetical protein
68	 26.70	-2	58063..58605	+	180	161527580	-	Nmar_0068	-	glutamine amidotransferase class-I
69	 30.22	-1	58640..59602	+	320	161527581	-	Nmar_0069	-	TPR repeat-containing protein
70	 34.48	0	59729..59902	+	57	161527582	-	Nmar_0070	-	hypothetical protein
71	 35.51	0	60101..60514	+	137	161527583	-	Nmar_0071	-	ribosomal protein S6e
72	 35.31	0	60546..61808	+	420	161527584	-	Nmar_0072	-	translation initiation factor IF-2 subunit gamma
73	 24.12	-2	61801..62169	+	122	161527585	-	Nmar_0073	-	hypothetical protein
74	 33.78	0	62205..62654	+	149	161527586	-	Nmar_0074	-	PEBP family protein
75	 31.74	0	62723..64861	+	712	161527587	-	Nmar_0075	-	dolichyl-diphosphooligosaccharide--protein glycotransferase
76	 27.56	-1	64864..65019	-	51	161527588	-	Nmar_0076	-	RNA-binding protein Nop10p
77	 29.32	-1	65021..65818	-	265	161527589	-	Nmar_0077	-	RNA-binding S1 domain-containing protein
78	 31.83	0	65859..66389	-	176	161527590	-	Nmar_0078	-	cob(I)alamin adenosyltransferase
79	 29.05	-1	66477..67829	+	450	161527591	-	Nmar_0079	-	cobyrinic acid a,c-diamide synthase
80	 35.51	0	67818..68459	-	213	161527592	-	Nmar_0080	-	precorrin-8X methylmutase CbiC/CobH
81	 30.15	-1	68449..69201	-	250	161527593	-	Nmar_0081	-	cobalamin (vitamin B12) biosynthesis CbiX protein
82	 31.81	0	69198..70250	-	350	161527594	-	Nmar_0082	-	cobalamin (vitamin B12) biosynthesis CbiG protein
83	 33.98	0	70282..71367	-	361	161527595	-	Nmar_0083	-	cobalamin biosynthesis protein CbiD
84	 27.82	-1	71458..72327	+	289	161527596	-	Nmar_0084	-	NAD-dependent epimerase/dehydratase
85	 34.88	0	72304..73470	-	388	161527597	-	Nmar_0085	-	methionine adenosyltransferase
86	 32.11	0	73486..73731	-	81	161527598	-	Nmar_0086	-	like-Sm ribonucleoprotein core
87	 25.84	-2	73840..74493	+	217	161527599	-	Nmar_0087	-	RecA/RadA recombinase-like protein
88	 31.77	0	74592..77333	+	913	161527600	-	Nmar_0088	-	DEAD/DEAH box helicase domain-containing protein
89	 32.98	0	77330..78730	-	466	161527601	-	Nmar_0089	-	nucleic acid binding OB-fold tRNA/helicase-type
90	 32.06	0	78944..79882	+	312	161527602	-	Nmar_0090	-	ABC transporter related
91	 32.28	0	79866..80627	+	253	161527603	-	Nmar_0091	-	ABC-2 type transporter
92	 30.09	-1	80633..81373	-	246	161527604	-	Nmar_0092	-	UDP-glucose/GDP-mannose dehydrogenase
93	 28.49	-1	81548..82600	-	350	161527605	-	Nmar_0093	-	hypothetical protein
94	 31.84	0	82664..83803	+	379	161527606	-	Nmar_0094	-	hypothetical protein
95	 27.84	-1	83839..84402	+	187	161527607	-	Nmar_0095	-	GrpE protein
96	 36.37	0	84405..86315	+	636	161527608	-	Nmar_0096	-	chaperone protein DnaK
97	 35.73	0	86365..87450	+	361	161527609	-	Nmar_0097	-	chaperone protein DnaJ
98	 29.03	-1	87456..87989	+	177	161527610	-	Nmar_0098	-	hypothetical protein
99	 29.82	-1	88308..90212	-	634	161527611	-	Nmar_0099	-	glutamyl-tRNA(Gln) amidotransferase subunit E
100	 32.71	0	90221..91510	-	429	161527612	-	Nmar_0100	-	glutamyl-tRNA(Gln) amidotransferase subunit D
34.31	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.