IslandPath Analysis: Chlamydia trachomatis 434/Bu



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.55   STD DEV: 2.29
Chlamydia trachomatis 434/Bu, complete genome - 1..1038842
874 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.71	0	1..1017	+	338	166153974	hemB	CTL0001	-	delta-aminolevulinic acid dehydratase
2	 40.56	0	1043..2440	-	465	166153975	nqrA	CTL0002	-	Na(+)-translocating NADH-quinone reductase subunit A
3	 35.40	-2	2462..2896	-	144	166153976	-	CTL0003	-	hypothetical protein
4	 38.64	-1	3010..5157	+	715	166153977	greA	CTL0004	-	transcript cleavage factor/unknown domain fusion protein
5	 40.73	0	5345..6547	+	400	166153978	aspC	CTL0005	-	aromatic amino acid aminotransferase
6	 41.64	0	6522..7532	+	336	166153979	-	CTL0006	-	exported protein
7	 39.79	0	7548..10628	-	1026	166153980	recB	CTL0007	-	exodeoxyribonuclease V beta chain
8	 39.49	0	10630..13650	-	1006	166153981	recC	CTL0008	-	exodeoxyribonuclease V gamma chain
9	 39.46	0	13663..15342	+	559	166153982	-	CTL0009	-	putative membrane efflux protein
10	 40.07	0	15362..16177	-	271	166153983	-	CTL0010	-	hypothetical protein
11	 41.53	0	17072..19645	+	857	166153984	topA	CTL0011	-	DNA topoisomerase I/SWI domain fusion protein
12	 45.67	+1	19675..20679	-	334	166153985	-	CTL0012	-	putative oxidoreductase
13	 37.71	-1	20658..20954	-	98	166153986	-	CTL0013	-	integral membrane protein
14	 43.62	0	21059..22438	+	459	166153987	-	CTL0014	-	hypothetical protein
15	 46.11	+1	22438..23016	+	192	166153988	-	CTL0015	-	hypothetical protein
16	 41.73	0	23007..24281	+	424	166153989	-	CTL0016	-	hypothetical protein
17	 43.95	+1	24284..24820	+	178	166153990	-	CTL0017	-	hypothetical protein
18	 44.66	+1	25080..26138	+	352	166153991	recA	CTL0018	-	recombinase A
19	 40.34	0	26424..28250	+	608	166153992	-	CTL0019	-	putative exported lipoprotein
20	 41.52	0	28247..29737	+	496	166153993	recD	CTL0020	-	exodeoxyribonuclease V alpha chain
21	 42.22	0	29803..29982	+	59	166153994	-	CTL0021	-	hypothetical protein
22	 40.97	0	30083..30802	-	239	166153995	-	CTL0022	-	ABC transporter ATP-binding protein
23	 40.29	0	30811..31299	-	162	166153996	-	CTL0023	-	hypothetical protein
24	 42.96	0	31296..32105	-	269	166153997	kdsA	CTL0024	-	2-dehydro-3-deoxyphosphooctonate aldolase
25	 43.20	0	32591..32884	+	97	166153998	-	CTL0025	-	hypothetical protein
26	 39.94	0	32884..33201	+	105	166153999	-	CTL0026	-	hypothetical protein
27	 44.05	+1	33283..34290	+	335	166154000	sfhB	CTL0027	-	ribosomal large subunit pseudouridine synthase D
28	 38.82	-1	34390..34626	+	78	166154001	-	CTL0028	-	hypothetical protein
29	 42.97	0	34765..36237	-	490	166154002	gyrA2	CTL0029	-	DNA topoisomerase IV subunit A
30	 40.10	0	36252..38069	-	605	166154003	gyrB	CTL0030	-	DNA topoisomerase IV subunit B
31	 43.95	+1	38449..39456	+	335	166154004	hemA	CTL0031	-	glutamyl-tRNA reductase
32	 45.27	+1	40168..40569	+	133	166154005	sycE	CTL0032	-	Type III secretion system chaperone
33	 42.37	0	40573..43062	+	829	166154006	-	CTL0033	-	phosphopeptide binding protein ( to be a TTSS protein)
34	 41.27	0	43106..43357	+	83	166154007	-	CTL0034	-	hypothetical protein
35	 39.68	0	43384..43635	+	83	166154008	-	CTL0035	-	hypothetical protein
36	 39.56	0	43654..44103	+	149	166154009	-	CTL0036	-	hypothetical protein
37	 42.41	0	44123..44794	+	223	166154010	-	CTL0037	-	hypothetical protein
38	 44.92	+1	44796..46124	+	442	166154011	sctN	CTL0038	-	type III secretion system ATPase
39	 41.62	0	46147..46653	+	168	166154012	-	CTL0039	-	hypothetical protein
40	 42.49	0	46657..47508	+	283	166154013	-	CTL0040	-	hypothetical protein
41	 40.82	0	47518..48639	+	373	166154014	sctQ	CTL0041	-	type III secretion system protein
42	 42.70	0	48774..50246	+	490	166154015	pkn5	CTL0042	-	putative serine/threonine-protein kinase (TTSS effector protein)
43	 42.77	0	50243..53008	+	921	166154016	-	CTL0043	-	Type III secretion structural protein (outer membrane ring)
44	 41.36	0	53322..54392	-	356	166154017	aspC	CTL0044	-	ATP:guanido phosphotransferase
45	 43.10	0	54382..54903	-	173	166154018	-	CTL0045	-	hypothetical protein
46	 44.07	+1	55274..55813	-	179	166154019	rrf	CTL0046	-	ribosome recycling factor
47	 45.12	+1	55810..56547	-	245	166154020	pyrH	CTL0047	-	uridylate kinase
48	 42.29	0	56560..57408	-	282	166154021	tsf	CTL0048	-	elongation factor Ts
49	 42.05	0	57405..58253	-	282	166154022	rpsB	CTL0049	-	30S ribosomal protein S2
50	 43.71	0	58637..59821	-	394	166154023	ompA	CTL0050	-	major outer membrane protein
51	 42.58	0	60428..63670	+	1080	166154024	pbpB	CTL0051	-	penicillin-binding protein
52	 39.48	0	63734..64741	+	335	166154025	-	CTL0052	-	TPR repeat-containing protein
53	 42.56	0	65083..66534	+	483	166154026	-	CTL0053	-	cysteine desulfurase activator complex subunit SufB
54	 42.97	0	66537..67304	+	255	166154027	-	CTL0054	-	ABC transporter ATP-binding protein
55	 44.36	+1	67308..68495	+	395	166154028	-	CTL0055	-	hypothetical protein
56	 43.78	0	68488..69693	+	401	166154029	sufS	CTL0056	-	cysteine desulfurase
57	 41.25	0	69829..70674	+	281	166154030	parB	CTL0057	-	putative chromosome partitioning protein
58	 42.72	0	70666..71496	-	276	166154031	dppF	CTL0058	-	ABC transport protein, ATPase component
59	 41.30	0	71489..72454	-	321	166154032	dppD	CTL0059	-	ABC transport protein, ATPase component
60	 41.04	0	72615..73289	+	224	166154033	-	CTL0060	-	hypothetical protein
61	 44.34	+1	73292..74572	+	426	166154034	-	CTL0061	-	low-affinity inorganic phosphate transporter
62	 45.30	+1	74711..75922	+	403	166154035	pgk	CTL0062	-	phosphoglycerate kinase
63	 42.11	0	76182..77150	+	322	166154036	-	CTL0063	-	hypothetical protein
64	 44.61	+1	77201..78397	+	398	166154037	-	CTL0064	-	hypothetical protein
65	 41.39	0	78483..79661	+	392	166154038	-	CTL0065	-	hypothetical protein
66	 41.51	0	79658..80293	-	211	166154039	nth	CTL0066	-	endonuclease III
67	 41.95	0	80300..81634	-	444	166154040	trmE	CTL0067	-	tRNA modification GTPase TrmE
68	 42.16	0	81902..82807	+	301	166154041	psdD	CTL0068	-	phosphatidylserine decarboxylase
69	 44.65	+1	82872..84197	+	441	166154042	-	CTL0069	-	hypothetical protein
70	 43.40	0	84456..87365	+	969	166154043	secA	CTL0070	-	preprotein translocase subunit SecA
71	 40.34	0	87459..87986	-	175	166154044	-	CTL0071	-	hypothetical protein
72	 41.34	0	88063..89535	-	490	166154045	engA	CTL0072	-	GTP-binding protein EngA
73	 43.15	0	89651..90883	-	410	166154046	pcnB	CTL0073	-	polyA polymerase
74	 41.75	0	90898..92157	-	419	166154047	clpX	CTL0074	-	ATP-dependent protease ATP-binding subunit
75	 43.14	0	92167..92778	-	203	166154048	clpP	CTL0075	-	ATP-dependent Clp protease proteolytic subunit
76	 39.28	0	92945..94273	-	442	166154049	tig	CTL0076	-	trigger factor
77	 40.35	0	94632..98123	+	1163	166154050	-	CTL0077	-	putative helicase
78	 45.23	+1	98128..99228	+	366	166154051	mreB	CTL0078	-	cell shape determining protein
79	 46.06	+1	99225..101024	+	599	166154052	pckA	CTL0079	-	phosphoenolpyruvate carboxykinase
80	 39.06	-1	101136..103439	+	767	166154053	-	CTL0080	-	hypothetical protein
81	 41.26	0	103466..104638	+	390	166154054	-	CTL0081	-	hypothetical protein
82	 44.09	+1	104704..105726	-	340	166154055	ompB	CTL0082	-	outer membrane protein B
83	 46.37	+2	105860..106864	-	334	166154056	gpdA	CTL0083	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
84	 41.59	0	106861..108228	-	455	166154057	-	CTL0084	-	UDP-N-acetylglucosamine pyrophosphorylase
85	 36.07	-2	108240..108605	-	121	166154058	-	CTL0085	-	hypothetical protein
86	 44.60	+1	108598..109902	-	434	166154059	fliI	CTL0086	-	type III secretion system ATPase
87	 40.19	0	109976..110500	-	174	166154060	-	CTL0087	-	hypothetical protein
88	 41.99	0	110505..111509	-	334	166154061	fliF	CTL0088	-	type III secretion system protein
89	 44.44	+1	111783..112565	-	260	166154062	-	CTL0089	-	hypothetical protein
90	 45.89	+1	112562..113716	-	384	166154063	-	CTL0090	-	cysteine desulfurase
91	 43.47	0	113671..114351	-	226	166154064	pgmA	CTL0091	-	phosphoglyceromutase
92	 45.04	+1	114646..115371	+	241	166154065	-	CTL0092	-	ribosomal large subunit pseudouridine synthase B
93	 42.10	0	115490..116014	+	174	166154066	-	CTL0093	-	hypothetical protein
94	 44.50	+1	116041..116595	+	184	166154067	birA	CTL0094	-	biotin--protein ligase
95	 42.37	0	116602..117741	-	379	166154068	-	CTL0095	-	cell cycle protein
96	 45.15	+1	117833..119812	-	659	166154069	-	CTL0096	-	cation transporting ATPase
97	 42.30	0	119836..120582	-	248	166154070	-	CTL0097	-	putative integral membrane protein
98	 42.89	0	120619..121905	-	428	166154071	serS	CTL0098	-	seryl-tRNA synthetase
99	 45.92	+1	121947..123074	+	375	166154072	ribD	CTL0099	-	riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
100	 45.41	+1	123184..124458	+	424	166154073	ribA	CTL0100	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
41.55	MEAN

2.29	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.