IslandPath Analysis: Burkholderia mallei NCTC 10247



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.50   STD DEV: 5.12
Burkholderia mallei NCTC 10247 chromosome II, complete sequence - 1..2352693
2376 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.27	-2	1042..1167	-	41	126447657	-	BMA10247_A0001	-	hypothetical protein
2	 62.63	-1	1139..2326	+	395	126447264	-	BMA10247_A0002	-	hypothetical protein
3	 64.37	0	2420..3463	-	347	126446250	-	BMA10247_A0003	-	phage integrase family site specific recombinase
4	 67.72	0	3626..4006	-	126	126445889	-	BMA10247_A0004	-	hypothetical protein
5	 68.97	0	4086..4694	-	202	126447905	-	BMA10247_A0005	-	DNA-binding protein
6	 67.08	0	4862..6061	+	399	126447669	kbl	BMA10247_A0006	-	2-amino-3-ketobutyrate coenzyme A ligase
7	 64.34	0	6074..7105	+	343	126445944	tdh	BMA10247_A0007	-	L-threonine 3-dehydrogenase
8	 60.28	-1	7114..7395	+	93	126447550	-	BMA10247_A0008	-	hypothetical protein
9	 67.50	0	7440..8039	-	199	126446114	-	BMA10247_A0009	-	putative lipoprotein
10	 61.24	-1	8023..8151	+	42	126446640	-	BMA10247_A0010	-	hypothetical protein
11	 70.55	0	8183..8800	+	205	126447201	-	BMA10247_A0011	-	TetR family transcriptional regulator
12	 63.55	0	8772..9380	+	202	126447205	-	BMA10247_A0012	-	hypothetical protein
13	 66.86	0	9602..10618	-	338	126447705	-	BMA10247_A0013	-	succinylglutamate desuccinylase / aspartoacylase family protein
14	 67.76	0	10921..12111	-	396	126446469	ttuC	BMA10247_A0014	-	tartrate dehydrogenase
15	 67.21	0	12175..13092	+	305	126446886	-	BMA10247_A0015	-	LysR family transcriptional regulator
16	 58.77	-1	13166..13279	+	37	126446127	-	BMA10247_A0016	-	hypothetical protein
17	 67.11	0	13599..14276	+	225	126447878	-	BMA10247_A0017	-	hypothetical protein
18	 65.71	0	14471..15094	+	207	126445942	-	BMA10247_A0018	-	glutathione S-transferase
19	 70.04	0	15529..16062	-	177	126446619	-	BMA10247_A0019	-	hypothetical protein
20	 65.94	0	16073..17311	-	412	126446617	-	BMA10247_A0020	-	patatin family phospholipase
21	 65.65	0	17308..18093	-	261	126447595	bdhA-1	BMA10247_A0021	-	3-hydroxybutyrate dehydrogenase
22	 64.10	0	18140..18880	-	246	126445814	adc	BMA10247_A0022	-	acetoacetate decarboxylase
23	 71.69	0	19339..19935	+	198	126446191	-	BMA10247_A0023	-	PAP2 family protein
24	 66.24	0	19958..20194	-	78	126446318	-	BMA10247_A0024	-	sperm-specific protein Phi-1
25	 68.55	0	20193..20351	+	52	126446851	-	BMA10247_A0025	-	hypothetical protein
26	 68.36	0	20960..21787	-	275	126447929	-	BMA10247_A0026	-	siderophore-interacting protein
27	 69.71	0	21827..22450	-	207	126447334	-	BMA10247_A0027	-	PadR family transcriptional regulator
28	 58.33	-1	22436..22555	+	39	126445939	-	BMA10247_A0028	-	hypothetical protein
29	 65.25	0	22942..24348	+	468	126447071	-	BMA10247_A0029	-	cytochrome P450-related protein
30	 55.22	-2	24498..24698	+	66	126447278	-	BMA10247_A0030	-	hypothetical protein
31	 64.55	0	24872..25723	+	283	126447789	-	BMA10247_A0031	-	hypothetical protein
32	 66.67	0	25720..26553	+	277	126445725	-	BMA10247_A0032	-	hypothetical protein
33	 66.77	0	26550..28493	+	647	126446727	-	BMA10247_A0033	-	radical SAM domain/B12 binding domain-containing protein
34	 68.79	0	28507..29496	+	329	126446970	-	BMA10247_A0034	-	hypothetical protein
35	 67.95	0	29668..30288	-	206	126447570	-	BMA10247_A0035	-	LysE family protein
36	 69.46	0	30396..31289	+	297	126447011	-	BMA10247_A0036	-	chromosome replication initiation inhibitor protein
37	 67.20	0	31336..32091	-	251	126447426	-	BMA10247_A0037	-	Crp/FNR family transcriptional regulator
38	 67.09	0	32241..32708	-	155	126446632	-	BMA10247_A0038	-	universal stress protein
39	 63.04	-1	32774..32911	-	45	126447288	-	BMA10247_A0039	-	hypothetical protein
40	 63.64	0	33132..33362	+	76	126447149	-	BMA10247_A0040	-	hypothetical protein
41	 72.10	0	33455..33730	-	91	126447795	-	BMA10247_A0041	-	hypothetical protein
42	 70.93	0	33738..35708	+	656	126445650	-	BMA10247_A0042	-	aldehyde dehydrogenase (NADP) family protein
43	 67.68	0	35705..36100	+	131	126446478	-	BMA10247_A0043	-	gluconolactonase
44	 61.63	-1	36145..36978	-	277	126446035	-	BMA10247_A0044	-	A, transposase OrfB
45	 57.20	-2	37002..37265	-	87	126445677	-	BMA10247_A0045	-	transposase subfamily protein
46	 65.04	0	37344..37895	+	183	126447212	-	BMA10247_A0046	-	gluconolactonase
47	 71.54	0	37944..38210	-	88	126445595	-	BMA10247_A0047	-	hypothetical protein
48	 66.67	0	38162..38278	+	38	126447558	-	BMA10247_A0048	-	hypothetical protein
49	 69.78	0	38721..39137	-	138	126445688	-	BMA10247_A0049	-	hypothetical protein
50	 59.92	-1	39404..39640	+	78	126446148	-	BMA10247_A0050	-	hypothetical protein
51	 66.67	0	39764..40687	+	307	126446738	-	BMA10247_A0051	-	putative serine O-acetyltransferase
52	 66.79	0	40967..41770	-	267	126447232	-	BMA10247_A0052	-	short chain dehydrogenase/reductase family oxidoreductase
53	 67.01	0	41771..42649	-	292	126447728	folE	BMA10247_A0053	-	GTP cyclohydrolase I
54	 68.29	0	42637..43560	-	307	126445866	-	BMA10247_A0054	-	LysR family transcriptional regulator
55	 68.52	0	43659..44900	+	413	126446347	pobA	BMA10247_A0055	-	4-hydroxybenzoate 3-monooxygenase
56	 66.31	0	44973..45821	+	282	126445823	pcaI	BMA10247_A0056	-	3-oxoadipate CoA-transferase, alpha subunit
57	 65.91	0	45840..46496	+	218	126446639	-	BMA10247_A0057	-	3-oxoadipate CoA-succinyl transferase beta subunit
58	 71.96	0	46632..47990	+	452	126446175	pcaB	BMA10247_A0058	-	3-carboxy-cis,cis-muconate cycloisomerase
59	 67.43	0	48003..48788	+	261	126447451	-	BMA10247_A0059	-	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
60	 64.34	0	48804..49190	+	128	126446920	pcaC-2	BMA10247_A0060	-	4-carboxymuconolactone decarboxylase
61	 69.17	0	49358..50713	+	451	126446443	pcaK-1	BMA10247_A0061	-	4-hydroxybenzoate transporter
62	 65.86	0	50781..51029	-	82	126447758	-	BMA10247_A0062	-	hypothetical protein
63	 63.59	0	51130..51747	-	205	126447180	-	BMA10247_A0063	-	LysE family translocator protein
64	 70.33	0	51942..53198	-	418	126447699	-	BMA10247_A0064	-	major facilitator transporter
65	 64.40	0	53185..53802	-	205	126447187	-	BMA10247_A0065	-	hypothetical protein
66	 73.54	0	53842..54030	-	62	126446770	-	BMA10247_A0066	-	hypothetical protein
67	 67.20	0	54015..54578	-	187	126447229	-	BMA10247_A0067	-	chromate transport protein
68	 66.84	0	54639..55205	-	188	126445791	-	BMA10247_A0068	-	chromate transport protein
69	 69.52	0	55202..56113	-	303	126447625	-	BMA10247_A0069	-	chromate resistance protein ChrB
70	 69.56	0	56398..56916	-	172	126446799	-	BMA10247_A0070	-	hypothetical protein
71	 62.78	-1	57193..57732	+	179	126446252	-	BMA10247_A0071	-	hypothetical protein
72	 67.81	0	57737..58087	+	116	126446036	-	BMA10247_A0072	-	hypothetical protein
73	 66.67	0	58084..58791	+	235	126447920	-	BMA10247_A0073	-	RNA polymerase sigma factor
74	 70.25	0	59268..65180	+	1970	126447204	uvrA-1	BMA10247_A0074	-	excinuclease ABC, A subunit
75	 57.84	-2	65857..66060	+	67	126447692	-	BMA10247_A0075	-	hypothetical protein
76	 62.07	-1	66214..66474	-	86	126447156	-	BMA10247_A0076	-	hypothetical protein
77	 62.59	-1	66770..66916	+	48	126446704	-	BMA10247_A0077	-	hypothetical protein
78	 62.19	-1	66920..67120	+	66	126445893	-	BMA10247_A0078	-	hypothetical protein
79	 58.61	-1	67117..67389	+	90	126447651	-	BMA10247_A0079	-	hypothetical protein
80	 53.03	-2	67396..67527	-	43	126446995	-	BMA10247_A0080	-	hypothetical protein
81	 61.33	-1	67672..67971	-	99	126446286	-	BMA10247_A0081	-	H-NS histone family protein
82	 56.61	-2	68004..68192	-	62	126445661	-	BMA10247_A0082	-	hypothetical protein
83	 63.27	-1	68509..69861	+	450	126446216	kgtP	BMA10247_A0083	-	alpha-ketoglutarate permease
84	 68.84	0	69914..70924	+	336	126445715	-	BMA10247_A0084	-	C4-dicarboxylate transport sensor kinase
85	 64.52	0	70902..71834	+	310	126446070	-	BMA10247_A0085	-	C4-dicarboxylate transport sensor protein
86	 66.89	0	71818..73164	+	448	126447915	dctD-2	BMA10247_A0086	-	C4-dicarboxylate transport transcriptional regulatory protein
87	 64.17	0	73598..73717	-	39	126447678	-	BMA10247_A0087	-	hypothetical protein
88	 42.67	-2	74293..74442	+	49	126445819	-	BMA10247_A0088	-	hypothetical protein
89	 69.41	0	74625..75098	-	157	126445909	-	BMA10247_A0089	-	putative lipoprotein
90	 64.53	0	75195..75428	-	77	126446585	-	BMA10247_A0090	-	hypothetical protein
91	 68.22	0	75432..77357	+	641	126447300	-	BMA10247_A0091	-	hypothetical protein
92	 69.63	0	77608..78114	+	168	126447750	-	BMA10247_A0092	-	AraC family transcriptional regulator
93	 76.32	+1	78148..78261	-	37	126445609	-	BMA10247_A0093	-	hypothetical protein
94	 64.96	0	78336..78452	-	38	126446685	-	BMA10247_A0094	-	hypothetical protein
95	 67.49	0	78486..80681	+	731	126445709	plcN	BMA10247_A0095	-	non-hemolytic phospholipase C
96	 64.74	0	80905..81060	-	51	126446213	-	BMA10247_A0096	-	hypothetical protein
97	 60.23	-1	81245..81865	+	206	126446054	-	BMA10247_A0097	-	hypothetical protein
98	 56.82	-2	81765..82028	+	87	126447919	-	BMA10247_A0098	-	IS407A, transposase OrfA
99	 61.75	-1	82052..82885	+	277	126446183	-	BMA10247_A0099	-	IS407A, transposase OrfB
100	 68.24	0	83364..85646	-	760	126445975	-	BMA10247_A0101	-	putative exopolysaccharide tyrosine-protein kinase
68.50	MEAN

5.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.