IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. JLS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.46 STD DEV: 3.26
Mycobacterium sp. JLS, complete genome - 1..6048425
5739 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.39	0	252..1739	+	495	126432614	dnaA	Mjls_0001	-	chromosomal replication initiation protein
2	 70.59	0	2303..3499	+	398	126432615	-	Mjls_0002	-	DNA polymerase III subunit beta
3	 68.34	0	3529..4422	+	297	126432616	-	Mjls_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 69.55	0	4475..5617	+	380	126432617	recF	Mjls_0004	-	recombination protein F
5	 72.43	+1	5614..6186	+	190	126432618	-	Mjls_0005	-	hypothetical protein
6	 64.15	-1	6407..8434	+	675	126432619	gyrB	Mjls_0006	-	DNA gyrase subunit B
7	 66.11	0	8468..10978	+	836	126432620	-	Mjls_0007	-	DNA gyrase subunit A
8	 74.34	+1	10996..11868	+	290	126432621	-	Mjls_0008	-	hypothetical protein
9	 73.19	+1	12295..12708	-	137	126432622	-	Mjls_0009	-	hypothetical protein
10	 66.86	0	12806..13333	+	175	126432623	-	Mjls_0010	-	peptidylprolyl isomerase
11	 65.24	0	13347..13766	-	139	126432624	-	Mjls_0011	-	hypothetical protein
12	 64.21	-1	13922..14206	-	94	126432625	-	Mjls_0012	-	putative septation inhibitor protein
13	 73.36	+1	14272..15108	+	278	126432626	-	Mjls_0013	-	hypothetical protein
14	 69.33	0	15132..15806	+	224	126432627	-	Mjls_0014	-	para-aminobenzoate synthase component II
15	 69.23	0	15784..17658	-	624	126432628	-	Mjls_0015	-	serine/threonine protein kinase
16	 70.80	0	17655..18986	-	443	126432629	-	Mjls_0016	-	serine/threonine protein kinase
17	 68.97	0	19018..20493	-	491	126432630	-	Mjls_0017	-	peptidoglycan glycosyltransferase
18	 66.88	0	20490..21902	-	470	126432631	-	Mjls_0018	-	cell cycle protein
19	 70.19	0	21899..23374	-	491	126432632	-	Mjls_0019	-	protein phosphatase 2C domain-containing protein
20	 67.96	0	23371..23835	-	154	126432633	-	Mjls_0020	-	FHA domain-containing protein
21	 70.64	0	23979..25388	-	469	126432634	-	Mjls_0021	-	FHA domain-containing protein
22	 65.73	0	25750..26070	-	106	126432635	-	Mjls_0022	-	hypothetical protein
23	 63.33	-1	26325..27344	-	339	126432636	-	Mjls_0023	-	aldo/keto reductase
24	 62.87	-1	27429..28034	+	201	126432637	-	Mjls_0024	-	TetR family transcriptional regulator
25	 66.06	0	28178..29167	+	329	126432638	-	Mjls_0025	-	hypothetical protein
26	 64.14	-1	29192..30220	-	342	126432639	-	Mjls_0026	-	hypothetical protein
27	 69.39	0	30325..32196	-	623	126432640	-	Mjls_0027	-	hypothetical protein
28	 69.97	0	32527..33102	-	191	126432641	-	Mjls_0028	-	TetR family transcriptional regulator
29	 71.33	0	33176..34183	+	335	126432642	-	Mjls_0029	-	NAD-dependent epimerase/dehydratase
30	 71.94	+1	34183..36399	+	738	126432643	-	Mjls_0030	-	acyl-CoA dehydrogenase domain-containing protein
31	 67.82	0	36413..37621	+	402	126432644	-	Mjls_0031	-	hypothetical protein
32	 67.15	0	37626..38042	+	138	126432645	-	Mjls_0032	-	hypothetical protein
33	 69.85	0	38039..38446	+	135	126432646	-	Mjls_0033	-	hypothetical protein
34	 70.73	0	38443..39255	+	270	126432647	-	Mjls_0034	-	short-chain dehydrogenase/reductase SDR
35	 70.85	0	39279..40019	-	246	126432648	-	Mjls_0035	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
36	 70.12	0	40016..40420	-	134	126432649	-	Mjls_0036	-	DNA binding domain-containing protein
37	 71.86	+1	40613..42613	+	666	126432650	-	Mjls_0037	-	hypothetical protein
38	 73.13	+1	42610..45099	+	829	126432651	-	Mjls_0038	-	hypothetical protein
39	 69.17	0	45101..46258	+	385	126432652	-	Mjls_0039	-	hypothetical protein
40	 72.00	+1	46361..47392	+	343	126432653	-	Mjls_0040	-	FHA domain-containing protein
41	 64.12	-1	47453..47962	+	169	126432654	-	Mjls_0041	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
42	 68.54	0	47959..48438	+	159	126432655	-	Mjls_0042	-	hypothetical protein
43	 72.56	+1	48419..49249	-	276	126432656	-	Mjls_0043	-	hypothetical protein
44	 66.99	0	49301..49606	-	101	126432657	-	Mjls_0044	-	hypothetical protein
45	 64.85	-1	49619..50113	-	164	126432658	-	Mjls_0045	-	hypothetical protein
46	 69.23	0	50168..50518	+	116	126432659	-	Mjls_0046	-	hypothetical protein
47	 69.73	0	50652..50945	-	97	126432660	-	Mjls_0047	-	transcription factor WhiB
48	 72.81	+1	51304..52035	+	243	126432661	-	Mjls_0048	-	hypothetical protein
49	 73.92	+1	52157..53107	+	316	126432662	-	Mjls_0049	-	hypothetical protein
50	 75.10	+2	53177..54208	-	343	126432663	-	Mjls_0050	-	FHA domain-containing protein
51	 68.12	0	54326..55285	-	319	126432664	-	Mjls_0051	-	hypothetical protein
52	 69.49	0	56157..57005	+	282	126432665	-	Mjls_0052	-	hypothetical protein
53	 68.26	0	57018..57518	+	166	126432666	-	Mjls_0053	-	hypothetical protein
54	 67.94	0	57511..59232	+	573	126432667	-	Mjls_0054	-	ATPase central domain-containing protein
55	 68.90	0	59236..60711	+	491	126432668	-	Mjls_0055	-	hypothetical protein
56	 67.65	0	60725..62962	+	745	126432669	-	Mjls_0056	-	cell divisionFtsK/SpoIIIE
57	 68.50	0	62959..64761	+	600	126432670	-	Mjls_0057	-	cell divisionFtsK/SpoIIIE
58	 72.45	+1	64909..65202	+	97	126432671	-	Mjls_0058	-	PE domain-containing protein
59	 71.25	0	65253..66584	+	443	126432672	-	Mjls_0059	-	PPE protein
60	 67.00	0	66678..66977	+	99	126432673	-	Mjls_0060	-	10 kDa culture filtrate antigen LHP (CFP10)
61	 68.75	0	67008..67295	+	95	126432674	-	Mjls_0061	-	6 kDa early secretory antigenic target EsaT6 (EsaT-6)
62	 70.87	0	67401..68828	+	475	126432675	-	Mjls_0062	-	hypothetical protein
63	 69.81	0	68891..70354	+	487	126432676	-	Mjls_0063	-	hypothetical protein
64	 75.96	+2	70364..70675	+	103	126432677	-	Mjls_0064	-	hypothetical protein
65	 66.04	0	70681..71001	-	106	126432678	-	Mjls_0065	-	hypothetical protein
66	 74.33	+1	71010..72614	-	534	126432679	-	Mjls_0066	-	hypothetical protein
67	 68.60	0	72665..74062	-	465	126432680	-	Mjls_0067	-	hypothetical protein
68	 70.60	0	74059..75405	-	448	126432681	-	Mjls_0068	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
69	 74.42	+1	75596..75853	-	85	126432682	-	Mjls_0069	-	phosphotransferase system, phosphocarrier protein HPr
70	 70.93	0	75884..77899	-	671	126432683	-	Mjls_0070	-	PTS system, fructose subfamily, IIC subunit
71	 75.87	+2	77920..78897	-	325	126432684	-	Mjls_0071	-	ribokinase-like domain-containing protein
72	 72.01	+1	78894..79661	-	255	126432685	-	Mjls_0072	-	DeoR family transcriptional regulator
73	 74.07	+1	79704..81458	+	584	126432686	-	Mjls_0073	-	phosphoenolpyruvate--protein phosphotransferase
74	 70.82	0	81495..82481	+	328	126432687	-	Mjls_0074	-	pirin domain-containing protein
75	 72.97	+1	82484..84640	-	718	126432688	-	Mjls_0075	-	membrane protein-like protein
76	 67.31	0	84672..85289	-	205	126432689	-	Mjls_0076	-	TetR family transcriptional regulator
77	 64.31	-1	85404..86039	+	211	126432690	-	Mjls_0077	-	TetR family transcriptional regulator
78	 69.44	0	86148..87086	+	312	126432691	-	Mjls_0078	-	putative methyltransferase
79	 72.35	+1	87083..87874	+	263	126432692	-	Mjls_0079	-	putative methyltransferase
80	 66.31	0	87946..89358	+	470	126432693	-	Mjls_0080	-	aldehyde dehydrogenase
81	 67.70	0	89433..90299	+	288	126432694	-	Mjls_0081	-	short-chain dehydrogenase/reductase SDR
82	 70.60	0	90308..91273	+	321	126432695	-	Mjls_0082	-	alcohol dehydrogenase
83	 69.79	0	91270..91974	+	234	126432696	-	Mjls_0083	-	haloacid dehalogenase, type II
84	 71.19	0	91997..92704	+	235	126432697	-	Mjls_0084	-	methyltransferase type 11
85	 71.43	0	92701..93183	+	160	126432698	-	Mjls_0085	-	hypothetical protein
86	 68.46	0	93237..94073	-	278	126432699	-	Mjls_0086	-	hypothetical protein
87	 72.78	+1	94165..94965	-	266	126432700	-	Mjls_0087	-	protein tyrosine/serine phosphatase
88	 68.20	0	94965..96266	-	433	126432701	-	Mjls_0088	-	acyl-CoA dehydrogenase domain-containing protein
89	 69.55	0	96324..97466	-	380	126432702	-	Mjls_0089	-	acyl-CoA dehydrogenase domain-containing protein
90	 67.22	0	97472..98911	-	479	126432703	-	Mjls_0090	-	NAD(P) transhydrogenase, beta subunit
91	 69.29	0	98915..100438	-	507	126432704	pntA	Mjls_0091	-	NAD(P) transhydrogenase subunit alpha
92	 70.89	0	100492..101178	-	228	126432705	-	Mjls_0092	-	short chain dehydrogenase
93	 70.65	0	101316..102923	+	535	126432706	-	Mjls_0093	-	Na+/H+ antiporter
94	 69.69	0	103058..103918	+	286	126432707	-	Mjls_0094	-	binding-protein-dependent transport systems inner membrane component
95	 67.06	0	103925..104950	+	341	126432708	-	Mjls_0095	-	substrate-binding region of ABC-type glycine betaine transport system
96	 72.56	+1	104934..105713	+	259	126432709	-	Mjls_0096	-	ABC transporter related
97	 65.12	-1	105821..105949	-	42	126432710	-	Mjls_0097	-	hypothetical protein
98	 67.42	0	106098..106757	+	219	126432711	-	Mjls_0098	-	TetR family transcriptional regulator
99	 70.16	0	106750..107523	+	257	126432712	-	Mjls_0099	-	short-chain dehydrogenase/reductase SDR
100	 67.46	0	107520..109286	+	588	126432713	-	Mjls_0100	-	acyl-CoA dehydrogenase domain-containing protein
68.46	MEAN

3.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.