IslandPath Analysis: Saccharophagus degradans 2-40



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.18   STD DEV: 3.60
Saccharophagus degradans 2-40, complete genome - 1..5057531
4008 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.87	0	383..1957	+	524	90019650	-	Sde_0001	-	chromosomal replication initiator protein DnaA
2	 44.47	0	2145..3248	+	367	90019651	-	Sde_0002	-	DNA polymerase III subunit beta
3	 45.20	0	3297..4400	+	367	90019652	-	Sde_0003	-	RecF protein
4	 46.56	0	4437..6863	+	808	90019653	gyrB	Sde_0004	-	DNA gyrase subunit B
5	 45.99	0	7034..7507	+	157	90019654	-	Sde_0005	-	hypothetical protein
6	 46.21	0	7724..9664	+	646	90019655	-	Sde_0006	-	acetoacetyl-CoA synthetase
7	 36.46	-2	9715..10098	+	127	90019656	-	Sde_0007	-	hypothetical protein
8	 39.53	-1	10175..10690	+	171	90019657	-	Sde_0008	-	hypothetical protein
9	 43.47	0	10761..12200	-	479	90019658	-	Sde_0009	-	PAS
10	 46.28	0	12253..12669	-	138	90019659	-	Sde_0010	-	hypothetical protein
11	 43.15	0	12672..13394	-	240	90019660	-	Sde_0011	-	Protoheme IX farnesyltransferase
12	 48.29	0	13508..15580	-	690	90019661	-	Sde_0012	-	glycine--tRNA ligase
13	 50.78	+1	15577..16533	-	318	90019662	glyQ	Sde_0013	-	glycyl-tRNA synthetase subunit alpha
14	 50.68	+1	16846..17733	+	295	90019663	-	Sde_0014	-	lipid A biosynthesis lauroyl acyltransferase
15	 42.18	-1	17798..18328	+	176	90019664	-	Sde_0015	-	phenylacetic acid degradation-related protein
16	 40.29	-1	18822..19310	+	162	90019665	-	Sde_0016	-	hypothetical protein
17	 49.28	0	19328..20776	-	482	90019666	-	Sde_0017	-	potassium uptake protein TrkH
18	 51.67	+1	20815..22248	-	477	90019667	trkA	Sde_0018	-	potassium transporter peripheral membrane component
19	 51.35	+1	22285..23622	-	445	90019668	-	Sde_0019	-	Sun protein
20	 52.53	+1	23650..24618	-	322	90019669	-	Sde_0020	-	methionyl-tRNA formyltransferase
21	 47.40	0	24696..25214	-	172	90019670	def	Sde_0021	-	peptide deformylase
22	 49.39	0	25495..26553	+	352	90019671	-	Sde_0022	-	hypothetical protein
23	 49.92	+1	26674..27873	+	399	90019672	-	Sde_0023	-	filamentous haemagglutinin-like
24	 51.39	+1	28140..28715	+	191	90019673	-	Sde_0024	-	translation factor SUA5
25	 51.43	+1	28757..29668	+	303	90019674	-	Sde_0025	-	coproporphyrinogen III oxidase
26	 51.14	+1	29694..30530	+	278	90019675	-	Sde_0026	-	shikimate dehydrogenase
27	 48.44	0	30581..31798	+	405	90019676	-	Sde_0027	-	hypothetical protein
28	 48.06	0	31895..32539	+	214	90019677	-	Sde_0028	-	hypothetical protein
29	 45.53	0	32579..33349	-	256	90019678	-	Sde_0029	-	regulatory protein, LuxR
30	 50.90	+1	33407..33964	-	185	90019679	-	Sde_0030	-	anhydrase family 3 protein
31	 45.92	0	34108..36165	+	685	90019680	-	Sde_0031	-	oligopeptidase A
32	 42.19	-1	36162..36398	+	78	90019681	-	Sde_0032	-	hypothetical protein
33	 43.36	0	36416..37093	-	225	90019682	-	Sde_0033	-	hypothetical protein
34	 45.60	0	37816..40122	+	768	90019683	-	Sde_0034	-	hypothetical protein
35	 48.81	0	40360..41910	-	516	90019684	-	Sde_0035	-	DNA-damage-inducible protein F
36	 48.37	0	42043..43179	+	378	90019685	-	Sde_0036	-	cytochrome c oxidase, subunit II
37	 49.00	0	43193..44743	+	516	90019686	-	Sde_0037	-	cytochrome-c oxidase
38	 44.87	0	44801..45424	+	207	90019687	-	Sde_0038	-	cytochrome C oxidase assembly protein
39	 44.92	0	45455..46369	+	304	90019688	-	Sde_0039	-	cytochrome c oxidase, subunit III
40	 41.37	-1	46374..46622	-	82	90019689	-	Sde_0040	-	DNA polymerase A
41	 45.05	0	46651..47418	+	255	90019690	-	Sde_0041	-	hypothetical protein
42	 42.74	0	47519..48145	+	208	90019691	-	Sde_0042	-	hypothetical protein
43	 47.51	0	48155..49339	+	394	90019692	-	Sde_0043	-	putative cytochrome oxidase assembly protein
44	 44.52	0	49405..50316	+	303	90019693	-	Sde_0044	-	protoheme IX farnesyltransferase
45	 40.00	-1	50319..50978	+	219	90019694	-	Sde_0045	-	GGDEF
46	 43.04	0	51406..52116	+	236	90019695	-	Sde_0046	-	hypothetical protein
47	 43.11	0	52190..52639	+	149	90019696	-	Sde_0047	-	response regulator receiver domain-containing protein
48	 41.60	-1	52828..53202	+	124	90019697	-	Sde_0048	-	methyl-accepting chemotaxis sensory transducer
49	 38.99	-1	53230..53724	+	164	90019698	-	Sde_0049	-	hypothetical protein
50	 38.88	-2	53749..55335	+	528	90019699	-	Sde_0050	-	hypothetical protein
51	 49.70	0	55438..56280	-	280	90019700	-	Sde_0051	-	periplasmic nitrate reductase, large subunit
52	 48.72	0	56292..57422	-	376	90019701	-	Sde_0052	-	alcohol dehydrogenase class III
53	 43.83	0	57877..58857	+	326	90019702	-	Sde_0053	-	phospholipase/lecithinase/hemolysin-like
54	 50.99	+1	59302..60915	+	537	90019703	-	Sde_0054	-	adenylyl cyclase class-3/4/guanylyl cyclase
55	 54.43	+2	60987..62588	+	533	90019704	-	Sde_0055	-	hemolysin activation/secretion protein-like
56	 48.42	0	62662..70701	+	2679	90019705	-	Sde_0056	-	hypothetical protein
57	 47.40	0	70739..71527	-	262	90019706	-	Sde_0057	-	zinc transport system permease protein
58	 50.76	+1	71520..72305	-	261	90019707	-	Sde_0058	-	ABC-type Mn/Zn transport systems, ATPase component
59	 48.88	0	72305..72793	-	162	90019708	-	Sde_0059	-	zinc uptake regulation protein, putative
60	 50.87	+1	72902..73882	+	326	90019709	-	Sde_0060	-	XRE family transcriptional regulator
61	 41.08	-1	73913..75874	+	653	90019710	-	Sde_0061	-	prolyl oligopeptidase family protein
62	 43.51	0	75944..77053	-	369	90019711	-	Sde_0062	-	response regulator receiver domain-containing protein
63	 44.87	0	77167..78501	+	444	90019712	-	Sde_0063	-	hypothetical protein
64	 48.34	0	78862..80547	+	561	90019713	-	Sde_0064	-	putative secreted beta-mannosidase
65	 45.09	0	80594..81997	-	467	90019714	-	Sde_0065	-	NhaD family Na(+)/H(+) antiporter
66	 48.62	0	82187..82945	-	252	90019715	-	Sde_0066	-	putative ribonuclease HI
67	 43.41	0	83615..84031	-	138	90019716	-	Sde_0067	-	hypothetical protein
68	 41.92	-1	84125..84706	+	193	90019717	-	Sde_0068	-	TetR family transcriptional regulator
69	 43.57	0	84894..85274	-	126	90019718	-	Sde_0069	-	hypothetical protein
70	 46.11	0	85323..89135	-	1270	90019719	-	Sde_0070	-	hypothetical protein
71	 48.21	0	89135..90976	-	613	90019720	-	Sde_0071	-	Outer membrane protein/protective antigen OMA87-like
72	 44.56	0	91315..91608	-	97	90019721	-	Sde_0072	-	histidine kinase, HAMP region
73	 50.92	+1	92145..94925	+	926	90019722	-	Sde_0073	-	DNA polymerase I
74	 42.52	-1	95014..95568	-	184	90019723	-	Sde_0074	-	hypothetical protein
75	 51.25	+1	96189..96830	-	213	90019724	-	Sde_0075	-	cell division checkpoint GTPase YihA
76	 50.44	+1	97133..97816	+	227	90019725	-	Sde_0076	-	cytochrome c4 precursor
77	 46.94	0	98054..98935	+	293	90019726	-	Sde_0077	-	hypothetical protein
78	 51.41	+1	99134..100831	+	565	90019727	-	Sde_0078	-	GGDEF domain-containing protein
79	 47.62	0	100894..101670	+	258	90019728	-	Sde_0079	-	cellulose binding, type IV
80	 44.00	0	101735..102109	-	124	90019729	-	Sde_0080	-	response regulator receiver domain-containing protein
81	 48.81	0	102146..103780	-	544	90019730	-	Sde_0081	-	putative methyl-accepting chemotaxis sensory transducer
82	 48.20	0	103914..104135	+	73	90019731	-	Sde_0082	-	hypothetical protein
83	 50.53	+1	104132..104416	+	94	90019732	-	Sde_0083	-	hypothetical protein
84	 47.20	0	104416..106911	+	831	90019733	-	Sde_0084	-	nitrate reductase
85	 43.16	0	106915..107433	+	172	90019734	-	Sde_0085	-	periplasmic nitrate reductase subunit NapB
86	 46.90	0	107529..108044	+	171	90019735	-	Sde_0086	-	periplasmic nitrate reductase subunit NapC
87	 45.70	0	108353..110155	+	600	90019736	-	Sde_0087	-	hypothetical protein
88	 45.72	0	110214..110867	-	217	90019737	-	Sde_0088	-	hypothetical protein
89	 40.74	-1	111021..111425	+	134	90019738	-	Sde_0089	-	vault protein inter-alpha-trypsin
90	 48.03	0	111429..111986	-	185	90019739	-	Sde_0090	-	peptidase C60, sortase A and B
91	 47.30	0	112021..112779	-	252	90019740	-	Sde_0091	-	putative serine dehydrogenase
92	 51.42	+1	112839..114137	-	432	90019741	-	Sde_0092	-	hypothetical protein
93	 50.95	+1	114131..114499	-	122	90019742	-	Sde_0093	-	hypothetical protein
94	 40.42	-1	114662..115042	-	126	90019743	-	Sde_0094	-	hypothetical protein
95	 51.69	+1	115035..115595	-	186	90019744	-	Sde_0095	-	sigma-24 (FecI-like)
96	 49.62	0	115723..117177	+	484	90019745	-	Sde_0096	-	ferrochelatase
97	 47.76	0	117170..118528	+	452	90019746	-	Sde_0097	-	hypothetical protein
98	 49.27	0	118528..122172	+	1214	90019747	-	Sde_0098	-	hypothetical protein
99	 48.20	0	122243..123493	+	416	90019748	-	Sde_0099	-	hypothetical protein
100	 50.95	+1	123824..125356	-	510	90019749	-	Sde_0100	-	deacylase-like
46.18	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.