IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 67.73	0	1..1695	+	564	184199647	dnaA	KRH_00010	-	chromosomal replication initiator protein DnaA
2	 67.82	0	2304..3428	+	374	184199648	dnaN	KRH_00020	-	DNA polymerase III beta subunit
3	 73.68	0	3433..4857	+	474	184199649	recF	KRH_00030	-	DNA replication and repair protein RecF
4	 73.91	0	4850..5443	+	197	184199650	-	KRH_00040	-	hypothetical protein
5	 68.27	0	5696..7756	+	686	184199651	gyrB	KRH_00050	-	DNA gyrase subunit B
6	 68.79	0	7897..10539	+	880	184199652	gyrA	KRH_00060	-	DNA gyrase subunit A
7	 67.45	0	10638..11021	+	127	184199653	-	KRH_00070	-	hypothetical protein
8	 74.77	0	11498..11719	-	73	184199654	-	KRH_00080	-	hypothetical protein
9	 67.59	0	11743..13038	+	431	184199655	-	KRH_00090	-	NRAMP family transporter
10	 69.24	0	13143..14075	+	310	184199656	-	KRH_00100	-	hypothetical protein
11	 65.41	-1	14210..14764	+	184	184199657	-	KRH_00110	-	peptidyl-prolyl cis-trans isomerase
12	 69.28	0	14784..15509	+	241	184199658	-	KRH_00120	-	rhomboid family protein
13	 72.24	0	15883..17175	+	430	184199659	-	KRH_00130	-	MFS transporter
14	 74.46	0	17185..17877	-	230	184199660	-	KRH_00140	-	hypothetical protein
15	 68.74	0	17896..19050	-	384	184199661	-	KRH_00150	-	hypothetical protein
16	 69.08	0	19344..20006	+	220	184199662	-	KRH_00160	-	hypothetical protein
17	 72.36	0	20034..21035	-	333	184199663	-	KRH_00170	-	putative zinc-containing alcohol dehydrogenase
18	 73.40	0	21173..22582	+	469	184199664	-	KRH_00180	-	putative MFS transporter
19	 69.55	0	22732..24393	-	553	184199665	-	KRH_00190	-	putative acetolactate synthase large subunit
20	 68.48	0	24599..26029	-	476	184199666	-	KRH_00200	-	sugar transporter
21	 75.67	+1	26313..27578	-	421	184199667	-	KRH_00210	-	NagC family transcriptional regulator
22	 72.00	0	27932..28756	+	274	184199668	-	KRH_00220	-	hypothetical protein
23	 72.75	0	29102..29512	-	136	184199669	-	KRH_00230	-	hypothetical protein
24	 67.13	0	29562..31064	-	500	184199670	-	KRH_00240	-	putative amino acid transporter
25	 66.11	-1	31339..32787	-	482	184199671	-	KRH_00250	-	peptide transporter
26	 67.39	0	32978..33808	-	276	184199672	dkgA	KRH_00260	-	2,5-diketo-D-gluconic acid reductase
27	 73.72	0	33954..34364	+	136	184199673	-	KRH_00270	-	hypothetical protein
28	 74.42	0	34457..35230	-	257	184199674	-	KRH_00280	-	hypothetical protein
29	 58.33	-2	35301..35564	-	87	184199675	-	KRH_00290	-	hypothetical protein
30	 70.78	0	35689..36174	+	161	184199676	-	KRH_00300	-	MarR family transcriptional regulator
31	 71.49	0	36244..38130	+	628	184199677	-	KRH_00310	-	putative ABC transporter
32	 72.62	0	38175..38762	+	195	184199678	-	KRH_00320	-	hypothetical protein
33	 72.68	0	38815..39978	+	387	184199679	-	KRH_00330	-	putative ABC transporter ATP-binding protein
34	 71.18	0	39975..40727	+	250	184199680	-	KRH_00340	-	putative ABC transporter permease protein
35	 71.24	0	40724..41401	+	225	184199681	-	KRH_00350	-	putative ABC transporter permease protein
36	 68.52	0	41398..42366	+	322	184199682	-	KRH_00360	-	putative ABC transporter substrate-binding protein
37	 69.43	0	42847..43389	+	180	184199683	-	KRH_00370	-	hypothetical protein
38	 67.99	0	43813..44418	+	201	184199684	-	KRH_00380	-	hypothetical protein
39	 70.77	0	44506..45114	-	202	184199685	-	KRH_00390	-	hypothetical protein
40	 63.29	-1	45274..45894	+	206	184199686	sodA	KRH_00400	-	superoxide dismutase
41	 71.98	0	46004..46981	+	325	184199687	gyaR	KRH_00410	-	glyoxylate reductase
42	 72.86	0	47136..48314	-	392	184199688	iscS	KRH_00420	-	cysteine desulfurase
43	 68.17	0	48374..48706	+	110	184199689	-	KRH_00430	-	hypothetical protein
44	 71.44	0	48703..49602	-	299	184199690	nadC	KRH_00440	-	quinolinate phosphoribosyltransferase
45	 73.54	0	49580..51382	-	600	184199691	nadB	KRH_00450	-	L-aspartate oxidase
46	 71.96	0	51375..52715	-	446	184199692	nadA	KRH_00460	-	quinolinate synthetase A
47	 74.09	0	52712..53506	-	264	184199693	-	KRH_00470	-	hypothetical protein
48	 68.59	0	53732..55294	+	520	184199694	abgT	KRH_00480	-	aminobenzoyl-glutamate transport protein
49	 72.15	0	55493..58375	-	960	184199695	-	KRH_00490	-	hypothetical protein
50	 70.77	0	58522..59982	-	486	184199696	zwf	KRH_00500	-	glucose-6-phosphate 1-dehydrogenase
51	 51.35	-2	60484..61371	+	295	184199697	-	KRH_00510	-	putative bacteriocin
52	 68.83	0	62304..63275	+	323	184199698	-	KRH_00520	-	hypothetical protein
53	 70.70	0	63215..63487	+	90	184199699	-	KRH_00530	-	hypothetical protein
54	 69.14	0	63555..64685	-	376	184199700	-	KRH_00540	-	putative oxidoreductase
55	 66.34	-1	64827..65129	-	100	184199701	-	KRH_00550	-	hypothetical protein
56	 65.99	-1	65126..65716	-	196	184199702	-	KRH_00560	-	PfpI family peptidase
57	 71.90	0	65634..65786	+	50	184199703	-	KRH_00570	-	hypothetical protein
58	 70.18	0	65944..67194	-	416	184199704	-	KRH_00580	-	subtilisin family peptidase
59	 70.80	0	67759..68145	+	128	184199705	nrdI	KRH_00590	-	putative NrdI protein
60	 69.79	0	68284..68379	+	31	184199706	-	KRH_00600	-	hypothetical protein
61	 68.38	0	68383..68499	+	38	184199707	-	KRH_00610	-	hypothetical protein
62	 68.26	0	68691..70067	+	458	184199708	-	KRH_00620	-	L-serine dehydratase
63	 70.86	0	70106..71203	+	365	184199709	-	KRH_00630	-	putative arsenite export protein
64	 72.39	0	71450..71956	+	168	184199710	-	KRH_00640	-	hypothetical protein
65	 77.01	+1	72184..72357	+	57	184199711	-	KRH_00650	-	hypothetical protein
66	 67.50	0	72366..73322	+	318	184199712	-	KRH_00660	-	hypothetical protein
67	 68.47	0	73470..73691	-	73	184199713	-	KRH_00670	-	hypothetical protein
68	 73.53	0	73761..74357	+	198	184199714	-	KRH_00680	-	2',5' RNA ligase family protein
69	 74.24	0	74392..75804	+	470	184199715	-	KRH_00690	-	putative drug resistance efflux protein
70	 70.15	0	76049..77281	+	410	184199716	-	KRH_00700	-	putative hydrolase
71	 72.22	0	77413..78582	+	389	184199717	-	KRH_00710	-	hypothetical protein
72	 67.41	0	78613..79815	+	400	184199718	-	KRH_00720	-	putative glutaryl-CoA dehydrogenase
73	 76.16	+1	79947..80957	-	336	184199719	-	KRH_00730	-	hypothetical protein
74	 64.20	-1	80971..81294	-	107	184199720	-	KRH_00740	-	hypothetical protein
75	 70.49	0	81419..82777	+	452	184199721	-	KRH_00750	-	citrate transporter
76	 64.06	-1	82851..83042	-	63	184199722	-	KRH_00760	-	hypothetical protein
77	 69.30	0	83172..84122	-	316	184199723	-	KRH_00770	-	hypothetical protein
78	 71.71	0	84399..85271	+	290	184199724	-	KRH_00780	-	hypothetical protein
79	 65.24	-1	85462..85812	-	116	184199725	-	KRH_00790	-	hypothetical protein
80	 74.26	0	86025..87143	-	372	184199726	-	KRH_00800	-	hypothetical protein
81	 76.51	+1	87140..88135	-	331	184199727	-	KRH_00810	-	putative 2-hydroxy-3-oxopropionate reductase
82	 73.40	0	88300..88596	+	98	184199728	-	KRH_00820	-	hypothetical protein
83	 72.49	0	88593..89606	+	337	184199729	-	KRH_00830	-	hypothetical protein
84	 70.08	0	89821..91254	+	477	184199730	-	KRH_00840	-	aldehyde dehydrogenase
85	 70.91	0	91262..91945	-	227	184199731	-	KRH_00850	-	TetR family transcriptional regulator
86	 69.27	0	92058..93515	+	485	184199732	puo	KRH_00860	-	putrescine oxidase
87	 73.05	0	93578..94438	+	286	184199733	-	KRH_00870	-	hypothetical protein
88	 68.39	0	94435..95940	+	501	184199734	-	KRH_00880	-	putative amino acid transporter
89	 71.32	0	95968..96504	-	178	184199735	-	KRH_00890	-	TetR family transcriptional regulator
90	 67.57	0	96658..98199	-	513	184199736	-	KRH_00900	-	putative amino acid transporter
91	 72.35	0	98314..98700	+	128	184199737	hslR	KRH_00910	-	putative heat shock protein Hsp15
92	 62.99	-2	98729..99436	-	235	184199738	-	KRH_00920	-	GntR family transcriptional regulator
93	 62.27	-2	99644..101077	+	477	184199739	-	KRH_00930	-	putative ethanolamine permease
94	 59.36	-2	101099..102508	+	469	184199740	glnA	KRH_00940	-	glutamine synthetase I
95	 63.83	-1	102510..103250	+	246	184199741	-	KRH_00950	-	hypothetical protein
96	 63.65	-1	103282..104640	+	452	184199742	-	KRH_00960	-	aldehyde dehydrogenase
97	 60.75	-2	104698..105474	+	258	184199743	-	KRH_00970	-	putative oxidoreductase
98	 70.11	0	105699..107264	-	521	184199744	-	KRH_00980	-	hypothetical protein
99	 70.18	0	107551..108858	+	435	184199745	-	KRH_00990	-	hypothetical protein
100	 71.98	0	108839..110212	+	457	184199746	-	KRH_01000	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.