IslandPath Analysis: Campylobacter fetus subsp. fetus 82-40



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.55   STD DEV: 3.71
Campylobacter fetus subsp. fetus 82-40, complete genome - 1..1773615
1719 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.91	-1	1..1311	+	436	118474813	dnaA	CFF8240_0001	-	chromosomal replication initiation protein
2	 25.30	-2	1449..2519	+	356	118475405	dnaN	CFF8240_0002	-	DNA polymerase III subunit beta
3	 32.08	0	2528..4849	+	773	118474635	gyrB	CFF8240_0003	-	DNA gyrase subunit B
4	 22.99	-2	4849..6231	+	460	118475336	-	CFF8240_0004	-	diguanylate cyclase/phosphodiesterase, putative
5	 34.01	0	6234..6674	+	146	118475406	queF	CFF8240_0005	-	7-cyano-7-deazaguanine reductase
6	 34.64	0	6684..7904	+	406	118474660	-	CFF8240_0006	-	hydrolase
7	 28.37	-1	8055..8477	+	140	118474423	-	CFF8240_0007	-	hypothetical protein
8	 34.06	0	8478..10118	-	546	118474252	-	CFF8240_0008	-	flagellar hook protein
9	 35.35	0	10115..10906	-	263	118475635	flgD	CFF8240_0009	-	flagellar basal body rod modification protein
10	 30.15	0	10964..12565	-	533	118474297	-	CFF8240_0010	-	hypothetical protein
11	 32.42	0	12725..13927	+	400	118474563	-	CFF8240_0011	-	Bcr/CflA subfamily drug resistance transporter
12	 26.67	-1	13920..14054	+	44	118474098	-	CFF8240_0012	-	hypothetical protein
13	 41.29	+2	14014..15822	+	602	118474951	typA	CFF8240_0013	-	GTP-binding protein TypA/BipA
14	 27.78	-1	15822..16505	+	227	118475627	-	CFF8240_0014	-	hypothetical protein
15	 28.15	-1	16546..17607	-	353	118474655	-	CFF8240_0015	-	putative helix-turn-helix containsing protein
16	 33.16	0	17615..18184	-	189	118475400	rnhB	CFF8240_0016	-	ribonuclease HII
17	 33.23	0	18177..19154	-	325	118475138	-	CFF8240_0017	-	integral membrane protein
18	 34.06	0	19281..20240	+	319	118474259	-	CFF8240_0018	-	ferric cations import ATP-binding protein FbpC 1
19	 34.76	0	20250..20879	-	209	118474901	-	CFF8240_0019	-	Hsp12 variant C
20	 35.77	0	21001..21945	-	314	118474270	-	CFF8240_0020	-	cation efflux family protein
21	 36.33	0	22265..24334	+	689	118474565	nrdD	CFF8240_0021	-	anaerobic ribonucleoside triphosphate reductase
22	 38.46	+1	24547..25911	+	454	118474748	-	CFF8240_0022	-	putative nicotinate phosphoribosyltransferase
23	 37.04	0	25922..26083	+	53	118474776	-	CFF8240_0023	-	hypothetical protein
24	 32.89	0	26077..26748	+	223	118475730	-	CFF8240_0024	-	anaerobic ribonucleoside-triphosphate reductase activating protein
25	 36.07	0	26797..27345	-	182	118474544	-	CFF8240_0025	-	cytolethal distending toxin A/C family protein
26	 41.20	+2	27345..28145	-	266	118474325	-	CFF8240_0026	-	cytolethal distending toxin
27	 36.98	0	28154..28975	-	273	118475240	-	CFF8240_0027	-	cytolethal distending toxin A
28	 32.92	0	29351..29839	-	162	118474144	-	CFF8240_0028	-	putative transformation system protein
29	 38.71	+1	30007..31029	+	340	118474076	nrdF	CFF8240_0029	-	ribonucleotide-diphosphate reductase subunit beta
30	 35.29	0	31019..31681	+	220	118474993	-	CFF8240_0030	-	nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
31	 35.71	0	31739..32368	+	209	118475384	pcm	CFF8240_0031	-	protein-L-isoaspartate O-methyltransferase
32	 36.10	0	32443..33093	+	216	118474751	-	CFF8240_0032	-	superoxide dismutase(Fe)
33	 40.38	+1	33549..33860	+	103	118475131	rpsJ	CFF8240_0033	-	30S ribosomal protein S10
34	 40.41	+1	33879..34457	+	192	118474609	rplC	CFF8240_0034	-	50S ribosomal protein L3
35	 36.42	0	34454..35068	+	204	118474924	rplD	CFF8240_0035	-	50S ribosomal protein L4
36	 37.23	0	35071..35352	+	93	118474455	rplW	CFF8240_0036	-	50S ribosomal protein L23
37	 39.47	+1	35354..36184	+	276	118474857	rplB	CFF8240_0037	-	50S ribosomal protein L2
38	 35.82	0	36187..36468	+	93	118474223	rpsS	CFF8240_0038	-	30S ribosomal protein S19
39	 39.64	+1	36478..36810	+	110	118475310	rplV	CFF8240_0039	-	50S ribosomal protein L22
40	 39.63	+1	36812..37510	+	232	118474301	rpsC	CFF8240_0040	-	30S ribosomal protein S3
41	 38.03	+1	37513..37938	+	141	118475204	rplP	CFF8240_0041	-	50S ribosomal protein L16
42	 32.80	0	37925..38110	+	61	118474438	rpmC	CFF8240_0042	-	50S ribosomal protein L29
43	 37.21	0	38121..38378	+	85	118475461	rpsQ	CFF8240_0043	-	30S ribosomal protein S17
44	 36.86	0	38378..38746	+	122	118475201	rplN	CFF8240_0044	-	50S ribosomal protein L14
45	 35.04	0	38746..38979	+	77	118475687	rplX	CFF8240_0045	-	50S ribosomal protein L24
46	 35.36	0	38982..39524	+	180	118474581	rplE	CFF8240_0046	-	50S ribosomal protein L5
47	 38.71	+1	39526..39711	+	61	118474752	rpsN	CFF8240_0047	-	30S ribosomal protein S14
48	 35.10	0	39722..40117	+	131	118475769	rpsH	CFF8240_0048	-	30S ribosomal protein S8
49	 36.50	0	40239..40775	+	178	118475079	rplF	CFF8240_0049	-	50S ribosomal protein L6
50	 35.85	0	40785..41141	+	118	118475606	rplR	CFF8240_0050	-	50S ribosomal protein L18
51	 38.51	+1	41156..41599	+	147	118475155	rpsE	CFF8240_0051	-	30S ribosomal protein S5
52	 36.32	0	41609..42010	+	133	118474217	rplO	CFF8240_0052	-	50S ribosomal protein L15
53	 35.39	0	42010..43272	+	420	118474381	secY	CFF8240_0053	-	preprotein translocase subunit SecY
54	 35.97	0	43274..44032	+	252	118475152	map	CFF8240_0054	-	methionine aminopeptidase
55	 38.36	+1	44281..44499	+	72	118474616	infA	CFF8240_0055	-	translation initiation factor IF-1
56	 38.21	+1	44776..45144	+	122	118475454	rpsM	CFF8240_0056	-	30S ribosomal protein S13
57	 39.44	+1	45154..45546	+	130	118474117	rpsK	CFF8240_0057	-	30S ribosomal protein S11
58	 36.20	0	45574..46200	+	208	118474712	rpsD	CFF8240_0058	-	30S ribosomal protein S4
59	 34.73	0	46213..47211	+	332	118475267	rpoA	CFF8240_0059	-	DNA-directed RNA polymerase subunit alpha
60	 39.22	+1	47230..47586	+	118	118474282	rplQ	CFF8240_0060	-	50S ribosomal protein L17
61	 39.33	+1	47811..48077	+	88	118475450	-	CFF8240_0061	-	NifU family protein
62	 30.78	0	48067..48615	+	182	118474868	-	CFF8240_0062	-	hypothetical protein
63	 34.11	0	48596..49885	+	429	118475066	murE	CFF8240_0063	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
64	 33.62	0	49905..50252	+	115	118474436	panD	CFF8240_0064	-	aspartate alpha-decarboxylase
65	 32.91	0	50740..52386	+	548	118474988	-	CFF8240_0065	-	methyl-accepting chemotaxis protein
66	 38.78	+1	52452..52763	+	103	118474266	-	CFF8240_0066	-	hypothetical protein
67	 32.31	0	52765..53841	+	358	118474184	-	CFF8240_0067	-	PDZ domain-containing protein
68	 35.97	0	53838..54671	+	277	118475576	-	CFF8240_0068	-	geranyltranstransferase
69	 38.43	+1	54677..56578	+	633	118475100	tkt	CFF8240_0069	-	transketolase
70	 36.78	0	56727..58175	+	482	118474863	-	CFF8240_0070	-	aldehyde dehydrogenase A
71	 35.32	0	58286..58486	-	66	118475652	-	CFF8240_0071	-	hypothetical protein
72	 40.21	+1	58470..60548	-	692	118475482	-	CFF8240_0072	-	carbon starvation protein A
73	 29.35	-1	60741..60941	+	66	118474422	thiS	CFF8240_0073	-	thiamine biosynthesis protein ThiS
74	 32.91	0	61168..61881	+	237	118475169	thiF	CFF8240_0074	-	thiamine biosynthesis protein ThiF
75	 38.32	+1	61874..62635	+	253	118474167	thiG	CFF8240_0075	-	thiazole synthase
76	 36.35	0	62657..63817	+	386	118474071	thiH	CFF8240_0076	-	thiamine biosynthesis protein ThiH
77	 33.82	0	63867..64484	-	205	118475029	-	CFF8240_0077	-	hypothetical protein
78	 36.94	0	64560..65390	+	276	118474242	galU	CFF8240_0078	-	UTP-glucose-1-phosphate uridylyltransferase
79	 33.75	0	65377..66582	+	401	118474952	pgi	CFF8240_0079	-	glucose-6-phosphate isomerase
80	 34.93	0	66787..67224	+	145	118475381	-	CFF8240_0080	-	starvation-inducible DNA-binding protein Dps
81	 32.28	0	67285..67851	-	188	118475197	-	CFF8240_0081	-	YceI
82	 30.97	0	68014..68394	-	126	118474631	-	CFF8240_0082	-	HIT family protein
83	 33.17	0	68391..69002	-	203	118475385	bioD	CFF8240_0083	-	dethiobiotin synthase
84	 25.51	-2	68999..69688	-	229	118474058	-	CFF8240_0084	-	putative biotin synthesis protein
85	 27.97	-1	69678..70292	-	204	118475704	-	CFF8240_0085	-	hypothetical protein
86	 32.61	0	70273..71379	-	368	118474862	-	CFF8240_0086	-	8-amino-7-oxononanoate synthase
87	 36.41	0	71548..71970	+	140	118475568	-	CFF8240_0087	-	hypothetical protein
88	 33.94	0	71949..72767	+	272	118475686	thiL	CFF8240_0088	-	thiamine monophosphate kinase
89	 33.16	0	72745..73878	+	377	118474715	truD	CFF8240_0089	-	tRNA pseudouridine synthase D
90	 29.03	-1	74353..74538	-	61	118474193	-	CFF8240_0090	-	hypothetical protein
91	 35.38	0	74552..74941	-	129	118474829	fliS	CFF8240_0091	-	flagellar protein FliS
92	 33.17	0	74952..76775	-	607	118474377	-	CFF8240_0092	-	flagellar capping protein
93	 33.60	0	76779..77159	-	126	118475281	-	CFF8240_0093	-	flagellar protein FlaG
94	 31.90	0	77281..77628	+	115	118474478	-	CFF8240_0094	-	hypothetical protein
95	 33.16	0	77612..78193	+	193	118475452	-	CFF8240_0095	-	putative methyltransferase
96	 37.90	+1	78255..79304	+	349	118475075	flgI	CFF8240_0096	-	flagellar basal body P-ring protein
97	 28.33	-1	79305..79604	+	99	118475721	-	CFF8240_0097	-	hypothetical protein
98	 32.84	0	79661..79864	+	67	118475047	-	CFF8240_0098	-	hypothetical protein
99	 29.66	-1	79904..80338	+	144	118474060	-	CFF8240_0099	-	hypothetical protein
100	 33.93	0	80340..82193	+	617	118474675	flgK	CFF8240_0100	-	flagellar hook-associated protein FlgK
33.55	MEAN

3.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.