IslandPath Analysis: Burkholderia cenocepacia AU 1054



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.02   STD DEV: 3.58
Burkholderia cenocepacia AU 1054 chromosome 3, complete sequence - 1..1196094
1040 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 69.93	0	148..606	+	152	107028232	-	Bcen_5482	-	(2Fe-2S)-binding
2	 70.76	+1	628..3120	+	830	107028233	-	Bcen_5483	-	twin-arginine translocation pathway signal
3	 67.32	0	3221..4288	-	355	107028234	-	Bcen_5484	-	AraC family transcriptional regulator
4	 68.91	0	4597..5844	+	415	107028235	-	Bcen_5485	-	carboxymethylenebutenolidase
5	 69.84	0	5885..6673	+	262	107028236	-	Bcen_5486	-	short chain dehydrogenase
6	 68.20	0	6738..7976	+	412	107028237	-	Bcen_5487	-	hypothetical protein
7	 67.99	0	7982..8509	+	175	107028238	-	Bcen_5488	-	flavin reductase-like, FMN-binding
8	 68.03	0	8546..9502	+	318	107028239	-	Bcen_5489	-	protein involved in MetA-pathway of phenol degradation-like
9	 67.90	0	9782..10756	-	324	107028240	-	Bcen_5490	-	type II secretion system protein
10	 66.67	0	10793..11770	-	325	107028241	-	Bcen_5491	-	type II secretion system protein
11	 67.47	0	11804..13168	-	454	107028242	-	Bcen_5492	-	type II secretion system protein E
12	 69.73	0	13187..14395	-	402	107028243	-	Bcen_5493	-	response regulator receiver protein
13	 64.86	0	14418..14861	-	147	107028244	-	Bcen_5494	-	TadE-like
14	 66.10	0	14858..15391	-	177	107028245	-	Bcen_5495	-	TadE-like
15	 67.14	0	15405..16676	-	423	107028246	-	Bcen_5496	-	hypothetical protein
16	 66.67	0	16702..17022	-	106	107028247	-	Bcen_5497	-	hypothetical protein
17	 71.33	+1	17019..18947	-	642	107028248	-	Bcen_5498	-	type II and III secretion system protein
18	 69.88	0	19052..19891	-	279	107028249	-	Bcen_5499	-	Flp pilus assembly CpaB
19	 70.74	+1	19927..21327	-	466	107028250	-	Bcen_5500	-	ATPase
20	 71.85	+1	21371..21910	-	179	107028251	-	Bcen_5501	-	peptidase A24A, prepilin type IV
21	 64.25	0	21939..22145	-	68	107028252	-	Bcen_5502	-	Flp/Fap pilin component
22	 60.42	-1	22228..22419	-	63	107028253	-	Bcen_5503	-	Flp/Fap pilin component
23	 58.33	-2	22559..22750	-	63	107028254	-	Bcen_5504	-	Flp/Fap pilin component
24	 58.61	-2	23256..23702	+	148	107028255	-	Bcen_5505	-	hypothetical protein
25	 67.23	0	23800..25038	+	412	107028256	-	Bcen_5506	-	hypothetical protein
26	 70.00	0	25035..26414	+	459	107028257	-	Bcen_5507	-	hypothetical protein
27	 67.43	0	26439..27482	+	347	107028258	-	Bcen_5508	-	glycosyl transferase family protein
28	 68.23	0	27495..27878	+	127	107028259	-	Bcen_5509	-	GtrA-like protein
29	 59.33	-2	28174..28677	+	167	107028260	-	Bcen_5510	-	hypothetical protein
30	 68.70	0	28743..29282	+	179	107028261	-	Bcen_5511	-	hypothetical protein
31	 68.15	0	29355..30296	-	313	107028262	-	Bcen_5512	-	extracellular solute-binding protein
32	 68.45	0	30383..31504	-	373	107028263	-	Bcen_5513	-	hypothetical protein
33	 72.18	+1	31899..33350	+	483	107028264	-	Bcen_5514	-	major facilitator transporter
34	 68.72	0	33403..34671	+	422	107028265	-	Bcen_5515	-	phosphoribosylglycinamide synthetase
35	 70.66	+1	34680..35555	-	291	107028266	-	Bcen_5516	-	LysR family transcriptional regulator
36	 72.80	+1	35703..36647	+	314	107028267	-	Bcen_5517	-	hypothetical protein
37	 69.72	0	36685..37896	+	403	107028268	-	Bcen_5518	-	phosphoribosylglycinamide synthetase
38	 66.75	0	37880..39076	-	398	107028269	-	Bcen_5519	-	major facilitator transporter
39	 64.98	0	39172..40062	+	296	107028270	-	Bcen_5520	-	LysR family transcriptional regulator
40	 61.63	-1	40129..40743	-	204	107028271	-	Bcen_5521	-	hypothetical protein
41	 62.54	-1	40840..41760	+	306	107028272	-	Bcen_5522	-	LysR family transcriptional regulator
42	 58.67	-2	41944..42168	-	74	107028273	-	Bcen_5523	-	hypothetical protein
43	 53.43	-2	42444..42647	-	67	107028274	-	Bcen_5524	-	cold-shock DNA-binding domain-containing protein
44	 64.40	0	42955..44058	-	367	107028275	-	Bcen_5525	-	alpha/beta hydrolase fold
45	 63.97	0	44266..44895	+	209	107028276	-	Bcen_5526	-	TetR family transcriptional regulator
46	 65.80	0	45251..46171	-	306	107028277	-	Bcen_5527	-	LysR family transcriptional regulator
47	 69.30	0	46253..47203	+	316	107028278	-	Bcen_5528	-	2-dehydropantoate 2-reductase
48	 66.41	0	47200..47592	+	130	107028279	-	Bcen_5529	-	glyoxalase/bleomycin resistance protein/dioxygenase
49	 64.71	0	47595..48053	+	152	107028280	-	Bcen_5530	-	MaoC-like dehydratase
50	 66.18	0	48053..49273	+	406	107028281	-	Bcen_5531	-	L-carnitine dehydratase/bile acid-inducible protein F
51	 68.22	0	49270..50106	+	278	107028282	-	Bcen_5532	-	shikimate 5-dehydrogenase
52	 65.69	0	50284..51516	+	410	107028283	-	Bcen_5533	-	major facilitator transporter
53	 55.56	-2	51630..52457	-	275	107028284	-	Bcen_5534	-	methyltransferase type 11
54	 67.11	0	52744..53646	-	300	107028285	-	Bcen_5535	-	6-phosphogluconate dehydrogenase, NAD-binding
55	 64.94	0	53704..55032	-	442	107028286	-	Bcen_5536	-	major facilitator transporter
56	 66.34	0	55428..56348	+	306	107028287	-	Bcen_5537	-	LysR family transcriptional regulator
57	 67.30	0	56651..57754	+	367	107028288	-	Bcen_5538	-	tartrate dehydrogenase
58	 69.22	0	57758..59206	+	482	107028289	-	Bcen_5539	-	aldehyde dehydrogenase
59	 65.39	0	59486..60424	-	312	107028290	-	Bcen_5540	-	cysteine synthase
60	 63.24	-1	60471..60878	-	135	107028291	-	Bcen_5541	-	membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG)
61	 68.63	0	61101..61967	-	288	107028292	-	Bcen_5542	-	NmrA-like
62	 66.18	0	62076..63098	+	340	107028293	-	Bcen_5543	-	LysR family transcriptional regulator
63	 60.59	-1	63160..64212	+	350	107028294	-	Bcen_5544	-	transposase, IS605 OrfB
64	 65.21	0	64282..65244	-	320	107028295	-	Bcen_5545	-	AraC family transcriptional regulator
65	 64.29	0	65397..66320	+	307	107028296	-	Bcen_5546	-	short-chain dehydrogenase/reductase SDR
66	 65.32	0	66488..67228	-	246	107028297	-	Bcen_5547	-	GntR family transcriptional regulator
67	 68.55	0	67225..68607	-	460	107028298	-	Bcen_5548	-	aminotransferase
68	 65.32	0	68618..69952	-	444	107028299	-	Bcen_5549	-	glutamate--ammonia ligase
69	 61.78	-1	70034..70381	-	115	107028300	-	Bcen_5550	-	hypothetical protein
70	 67.45	0	70453..71217	-	254	107028301	-	Bcen_5551	-	short-chain dehydrogenase/reductase SDR
71	 67.10	0	71359..72276	+	305	107028302	-	Bcen_5552	-	LysR family transcriptional regulator
72	 67.25	0	72412..72756	-	114	107028303	-	Bcen_5553	-	regulatory protein, LysR
73	 65.58	0	72814..73551	-	245	107028304	-	Bcen_5554	-	extracellular solute-binding protein
74	 66.12	0	73768..74679	-	303	107028305	-	Bcen_5555	-	ABC transporter related
75	 65.54	0	74725..75699	-	324	107028306	-	Bcen_5556	-	binding-protein-dependent transport systems inner membrane component
76	 70.40	0	77632..81249	-	1205	107028307	-	Bcen_5558	-	allophanate hydrolase subunit 2
77	 66.36	0	81338..81994	-	218	107028308	-	Bcen_5559	-	hypothetical protein
78	 68.65	0	82006..82761	-	251	107028309	-	Bcen_5560	-	hypothetical protein
79	 68.16	0	82961..83227	+	88	107028310	-	Bcen_5561	-	hypothetical protein
80	 66.67	0	83647..84669	+	340	107028311	-	Bcen_5562	-	ABC transport system substrate-binding protein
81	 61.67	-1	84817..85536	-	239	107028312	-	Bcen_5563	-	metallophosphoesterase
82	 56.25	-2	85820..86395	-	191	107028313	-	Bcen_5564	-	GCN5-related N-acetyltransferase
83	 55.43	-2	86662..87186	-	174	107028314	-	Bcen_5565	-	GCN5-related N-acetyltransferase
84	 51.73	-2	87289..87750	-	153	107028315	-	Bcen_5566	-	NUDIX hydrolase
85	 58.33	-2	88000..88527	-	175	107028316	-	Bcen_5567	-	hypothetical protein
86	 56.26	-2	88607..89173	-	188	107028317	-	Bcen_5568	-	hypothetical protein
87	 57.94	-2	89432..90394	-	320	107028318	-	Bcen_5569	-	LysR family transcriptional regulator
88	 61.97	-1	91209..91442	+	77	107028319	-	Bcen_5570	-	hypothetical protein
89	 71.09	+1	92949..94214	+	421	107028320	-	Bcen_5573	-	poly(3-hydroxybutyrate) depolymerase-like
90	 67.70	0	94262..96097	-	611	107028321	-	Bcen_5574	-	periplasmic sensor signal transduction histidine kinase
91	 66.46	0	96115..97533	-	472	107028322	-	Bcen_5575	-	response regulator receiver modulated metal dependent phosphohydrolase
92	 66.01	0	97655..98110	-	151	107028323	-	Bcen_5576	-	GCN5-related N-acetyltransferase
93	 59.75	-2	98368..98772	-	134	107028324	-	Bcen_5577	-	hypothetical protein
94	 63.76	0	98943..100148	-	401	107028325	-	Bcen_5578	-	sodium:dicarboxylate symporter
95	 59.13	-2	100165..100827	-	220	107028326	-	Bcen_5579	-	GntR family transcriptional regulator
96	 59.35	-2	100978..101442	+	154	107028327	-	Bcen_5580	-	GCN5-related N-acetyltransferase
97	 57.37	-2	101488..101799	+	103	107028328	-	Bcen_5581	-	hypothetical protein
98	 64.01	0	102211..103377	+	388	107028329	-	Bcen_5582	-	porin
99	 67.18	0	103410..104375	-	321	107028330	-	Bcen_5583	-	LysR family transcriptional regulator
100	 66.91	0	104493..105713	+	406	107028331	-	Bcen_5584	-	major facilitator transporter
67.02	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.