IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.70   STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.16	0	198..464	+	88	188579287	-	Mpop_0001	-	ribosomal protein S20
2	 69.59	0	1161..2666	+	501	188579288	-	Mpop_0002	-	chromosomal replication initiator protein DnaA
3	 68.18	0	2841..3962	+	373	188579289	-	Mpop_0003	-	DNA polymerase III, beta subunit
4	 72.37	0	4003..5160	+	385	188579290	-	Mpop_0004	-	DNA replication and repair protein RecF
5	 64.87	-1	5168..5779	+	203	188579291	-	Mpop_0005	-	Lysine exporter protein (LYSE/YGGA)
6	 69.70	0	5928..7775	+	615	188579292	-	Mpop_0006	-	ATP-dependent DNA helicase RecQ
7	 67.39	0	8058..8744	+	228	188579293	-	Mpop_0007	-	hypothetical protein
8	 71.52	0	8864..11047	+	727	188579294	-	Mpop_0008	-	helicase, RecD/TraA family
9	 68.86	0	11190..12374	+	394	188579295	-	Mpop_0009	-	hypothetical protein
10	 69.00	0	12563..14788	+	741	188579296	-	Mpop_0010	-	phosphoribosylformylglycinamidine synthase II
11	 68.35	0	14816..15052	+	78	188579297	-	Mpop_0011	-	BolA family protein
12	 61.90	-1	15115..15450	+	111	188579298	-	Mpop_0012	-	glutaredoxin-like protein
13	 69.99	0	15523..16425	+	300	188579299	-	Mpop_0013	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
14	 66.78	0	16536..17420	+	294	188579300	-	Mpop_0014	-	SMP-30/Gluconolaconase/LRE domain protein
15	 69.44	0	17607..17822	+	71	188579301	-	Mpop_0015	-	hypothetical protein
16	 71.41	0	17839..18660	-	273	188579302	-	Mpop_0016	-	hypothetical protein
17	 67.58	0	19483..20142	+	219	188579303	-	Mpop_0017	-	chaperone protein HtpG
18	 71.86	0	20130..22940	+	936	188579304	-	Mpop_0018	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
19	 65.73	0	22937..24322	+	461	188579305	-	Mpop_0019	-	Polysulphide reductase NrfD
20	 69.75	0	24319..24837	+	172	188579306	-	Mpop_0020	-	hypothetical protein
21	 72.73	0	24834..25361	+	175	188579307	-	Mpop_0021	-	hypothetical protein
22	 72.10	0	25358..26314	+	318	188579308	-	Mpop_0022	-	hypothetical protein
23	 72.41	0	26307..26828	+	173	188579309	-	Mpop_0023	-	hypothetical protein
24	 67.40	0	26828..27916	+	362	188579310	-	Mpop_0024	-	cytochrome c oxidase, subunit II
25	 65.31	-1	27948..29639	+	563	188579311	-	Mpop_0025	-	cytochrome c oxidase, subunit I
26	 66.96	0	29636..30325	+	229	188579312	-	Mpop_0026	-	cytochrome c oxidase subunit III
27	 71.95	0	30322..30624	+	100	188579313	-	Mpop_0027	-	caa(3)-type oxidase, subunit IV
28	 63.61	-1	31039..31398	+	119	188579314	-	Mpop_0028	-	hypothetical protein
29	 71.36	0	31484..32314	-	276	188579315	-	Mpop_0029	-	Lytic transglycosylase catalytic
30	 68.07	0	32370..33293	-	307	188579316	-	Mpop_0030	-	Curli production assembly/transport component CsgG
31	 62.64	-1	33442..33888	-	148	188579317	-	Mpop_0031	-	hypothetical protein
32	 65.43	-1	33927..34571	-	214	188579318	-	Mpop_0032	-	hypothetical protein
33	 69.07	0	34866..35198	-	110	188579319	-	Mpop_0033	-	hypothetical protein
34	 61.51	-2	35308..36510	-	400	188579320	-	Mpop_0034	-	hypothetical protein
35	 63.65	-1	37201..37764	+	187	188579321	-	Mpop_0035	-	transcriptional regulator, LuxR family
36	 70.73	0	38104..38718	+	204	188579322	-	Mpop_0036	-	hypothetical protein
37	 66.42	0	38767..39165	+	132	188579323	-	Mpop_0037	-	hypothetical protein
38	 69.50	0	39279..41324	-	681	188579324	-	Mpop_0038	-	PAS/PAC sensor hybrid histidine kinase
39	 68.38	0	41324..42841	-	505	188579325	-	Mpop_0039	-	putative circadian clock protein, KaiC
40	 69.14	0	43038..45467	-	809	188579326	-	Mpop_0040	-	PAS/PAC sensor hybrid histidine kinase
41	 71.48	0	46113..47318	+	401	188579327	-	Mpop_0041	-	hypothetical protein
42	 71.37	0	47337..48335	-	332	188579328	-	Mpop_0042	-	short-chain dehydrogenase/reductase SDR
43	 70.69	0	48445..49140	-	231	188579329	-	Mpop_0043	-	transcriptional regulator, GntR family
44	 70.98	0	49137..49901	-	254	188579330	-	Mpop_0044	-	malonate transporter, MadM subunit
45	 70.18	0	49905..50360	-	151	188579331	-	Mpop_0045	-	malonate transporter, MadL subunit
46	 68.00	0	50630..52276	+	548	188579332	-	Mpop_0046	-	malonate decarboxylase, alpha subunit
47	 70.55	0	52284..52592	+	102	188579333	-	Mpop_0047	-	malonate decarboxylase acyl carrier protein
48	 72.35	0	52595..53527	+	310	188579334	-	Mpop_0048	-	malonate decarboxylase, beta subunit
49	 71.83	0	53514..54230	+	238	188579335	-	Mpop_0049	-	malonate decarboxylase, gamma subunit
50	 73.48	0	54223..54882	+	219	188579336	-	Mpop_0050	-	hypothetical protein
51	 76.66	+1	54879..55739	+	286	188579337	-	Mpop_0051	-	triphosphoribosyl-dephospho-CoA synthase MdcB
52	 76.41	+1	55736..56659	+	307	188579338	-	Mpop_0052	-	acyl transferase domain protein
53	 69.99	0	56876..59161	+	761	188579339	-	Mpop_0053	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
54	 72.08	0	59272..60711	-	479	188579340	-	Mpop_0054	-	transcriptional regulator, GntR family with aminotransferase domain
55	 64.18	-1	61075..61557	+	160	188579341	-	Mpop_0055	-	hypothetical protein
56	 69.73	0	61617..62693	+	358	188579342	-	Mpop_0056	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
57	 70.92	0	62647..63750	+	367	188579343	-	Mpop_0057	-	Radical SAM domain protein
58	 71.45	0	63750..64292	+	180	188579344	-	Mpop_0058	-	GCN5-related N-acetyltransferase
59	 72.89	0	64292..65287	+	331	188579345	-	Mpop_0059	-	AIR synthase related protein
60	 71.81	0	65284..65808	+	174	188579346	-	Mpop_0060	-	glycosyltransferase
61	 72.70	0	65805..66980	+	391	188579347	-	Mpop_0061	-	glycosyl transferase group 1
62	 69.15	0	66973..67254	+	93	188579348	-	Mpop_0062	-	hypothetical protein
63	 67.30	0	67293..68561	+	422	188579349	-	Mpop_0063	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
64	 64.10	-1	68909..70000	-	363	188579350	-	Mpop_0064	-	hypothetical protein
65	 64.88	-1	70091..71155	-	354	188579351	-	Mpop_0065	-	hypothetical protein
66	 66.67	0	71625..71999	-	124	188579352	-	Mpop_0066	-	Glyoxalase/bleomycin resistance protein/dioxygenase
67	 69.45	0	72889..74469	+	526	188579353	-	Mpop_0067	-	integrase family protein
68	 69.84	0	74624..75001	+	125	188579354	-	Mpop_0068	-	metallophosphoesterase
69	 67.13	0	75117..76625	+	502	188579355	-	Mpop_0069	-	Integrase catalytic region
70	 66.53	0	76625..77356	+	243	188579356	-	Mpop_0070	-	IstB domain protein ATP-binding protein
71	 76.92	+1	77731..78003	+	90	188579357	-	Mpop_0072	-	hypothetical protein
72	 73.60	0	78000..78965	-	321	188579358	-	Mpop_0073	-	hypothetical protein
73	 75.89	+1	78965..79246	-	93	188579359	-	Mpop_0074	-	hypothetical protein
74	 70.56	0	79246..79836	-	196	188579360	-	Mpop_0075	-	hypothetical protein
75	 73.62	0	79926..80990	-	354	188579361	-	Mpop_0076	-	hypothetical protein
76	 74.90	+1	81085..81339	-	84	188579362	-	Mpop_0077	-	hypothetical protein
77	 74.68	+1	81378..81851	-	157	188579363	-	Mpop_0078	-	hypothetical protein
78	 72.85	0	81865..82866	-	333	188579364	-	Mpop_0079	-	HIRAN
79	 74.21	+1	82877..83194	-	105	188579365	-	Mpop_0080	-	hypothetical protein
80	 75.69	+1	83191..83445	-	84	188579366	-	Mpop_0081	-	hypothetical protein
81	 74.33	+1	83756..84616	+	286	188579367	-	Mpop_0082	-	hypothetical protein
82	 74.46	+1	84669..85502	+	277	188579368	-	Mpop_0083	-	hypothetical protein
83	 73.97	+1	85582..85896	-	104	188579369	-	Mpop_0084	-	hypothetical protein
84	 70.89	0	86830..87303	-	157	188579370	-	Mpop_0085	-	hypothetical protein
85	 74.50	+1	87578..89620	+	680	188579371	-	Mpop_0086	-	hypothetical protein
86	 72.90	0	90386..91123	+	245	188579372	-	Mpop_0088	-	TIR protein
87	 68.79	0	91288..92511	-	407	188579373	-	Mpop_0089	-	diguanylate cyclase
88	 69.01	0	92667..92879	+	70	188579374	-	Mpop_0090	-	hypothetical protein
89	 70.48	0	93093..95321	-	742	188579375	-	Mpop_0092	-	PAS/PAC sensor hybrid histidine kinase
90	 73.68	0	95330..95557	-	75	188579376	-	Mpop_0093	-	hypothetical protein
91	 71.51	0	95869..98658	+	929	188579377	-	Mpop_0094	-	signal transduction histidine kinase
92	 69.62	0	98948..99319	+	123	188579378	-	Mpop_0095	-	response regulator receiver protein
93	 70.66	0	99399..101624	-	741	188579379	-	Mpop_0096	-	multi-sensor hybrid histidine kinase
94	 71.57	0	101977..104139	-	720	188579380	-	Mpop_0097	-	integral membrane sensor hybrid histidine kinase
95	 70.69	0	104132..107284	-	1050	188579381	-	Mpop_0098	-	PAS/PAC sensor hybrid histidine kinase
96	 68.78	0	107288..107476	-	62	188579382	-	Mpop_0099	-	putative addiction module antidote protein, CopG/Arc/MetJ family
97	 75.16	+1	108270..108881	+	203	188579383	-	Mpop_0101	-	hypothetical protein
98	 68.68	0	109033..110376	-	447	188579384	-	Mpop_0102	-	transposase IS4 family protein
99	 72.96	0	110590..110748	+	52	188579385	-	Mpop_0103	-	hypothetical protein
100	 68.04	0	110767..110985	-	72	188579386	-	Mpop_0104	-	hypothetical protein
69.70	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.