IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.41   STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.90	-1	45..1457	+	470	99079842	dnaA	TM1040_0001	-	chromosomal replication initiation protein
2	 58.29	0	1739..2860	+	373	99079843	-	TM1040_0002	-	DNA polymerase III subunit beta
3	 61.55	0	2950..4023	+	357	99079844	recF	TM1040_0003	-	recombination protein F
4	 57.81	0	4020..4640	+	206	99079845	-	TM1040_0004	-	lysine exporter protein LysE/YggA
5	 55.10	-1	4633..5220	-	195	99079846	-	TM1040_0005	-	TetR family transcriptional regulator
6	 58.75	0	5336..5929	+	197	99079847	-	TM1040_0006	-	NAD(P)H dehydrogenase (quinone)
7	 59.31	0	6015..8432	+	805	99079848	gyrB	TM1040_0007	-	DNA gyrase subunit B
8	 59.20	0	8429..9205	-	258	99079849	radC	TM1040_0008	-	DNA repair protein RadC
9	 61.31	0	9343..10500	-	385	99079850	-	TM1040_0009	-	chaperone DnaJ
10	 58.42	0	10577..12505	-	642	99079851	-	TM1040_0010	-	chaperone DnaK
11	 57.71	0	12713..13315	+	200	99079852	-	TM1040_0011	-	DNA-N1-methyladenine dioxygenase
12	 54.49	-1	13332..14210	-	292	99079853	-	TM1040_0012	-	ABC transporter, permease protein
13	 57.27	0	14274..15071	+	265	99079854	-	TM1040_0013	-	3'(2'),5'-bisphosphate nucleotidase
14	 59.43	0	15072..15872	+	266	99079855	-	TM1040_0014	-	3-deoxy-manno-octulosonate cytidylyltransferase
15	 55.59	-1	16023..16916	+	297	99079856	-	TM1040_0015	-	UDP-glucose pyrophosphorylase
16	 59.04	0	17017..18000	+	327	99079857	-	TM1040_0016	-	UDP-galactose 4-epimerase
17	 59.23	0	18017..19078	+	353	99079858	-	TM1040_0017	-	hypothetical protein
18	 56.33	-1	19217..20203	+	328	99079859	-	TM1040_0018	-	hypothetical protein
19	 58.50	0	20200..21900	+	566	99079860	-	TM1040_0019	-	glycosyl transferase family protein
20	 57.71	0	21907..23346	+	479	99079861	-	TM1040_0020	-	hypothetical protein
21	 60.22	0	23420..23884	-	154	99079862	-	TM1040_0021	-	PTS IIA-like nitrogen-regulatory protein PtsN
22	 56.03	-1	23940..24503	-	187	99079863	-	TM1040_0022	-	SSU ribosomal protein S30P / sigma 54 modulation protein
23	 54.67	-1	24596..24820	+	74	99079864	-	TM1040_0023	-	hypothetical protein
24	 58.50	0	24823..25581	-	252	99079865	-	TM1040_0024	-	ABC transporter related
25	 60.46	0	25581..26015	-	144	99079866	-	TM1040_0025	-	OstA-like protein
26	 57.50	0	26085..26684	-	199	99079867	-	TM1040_0026	-	hypothetical protein
27	 58.70	0	26757..27371	-	204	99079868	-	TM1040_0027	-	3'-5' exonuclease
28	 60.81	0	27635..29086	+	483	99079869	-	TM1040_0028	-	xylulokinase
29	 56.83	-1	29083..30393	+	436	99079870	-	TM1040_0029	-	xylose isomerase
30	 59.23	0	30394..31401	+	335	99079871	-	TM1040_0030	-	aldose 1-epimerase
31	 61.93	0	31401..32708	+	435	99079872	-	TM1040_0031	-	methylamine utilization protein MauG, putative
32	 57.51	0	32737..34287	-	516	99079873	-	TM1040_0032	-	phospholipase D/transphosphatidylase
33	 59.27	0	34629..35831	+	400	99079874	-	TM1040_0033	-	sodium/hydrogen exchanger
34	 57.72	0	35895..36665	-	256	99079875	-	TM1040_0034	-	ABC transporter related
35	 58.04	0	36662..37519	-	285	99079876	-	TM1040_0035	-	ABC transporter related
36	 61.66	0	37516..38433	-	305	99079877	-	TM1040_0036	-	binding-protein-dependent transport systems inner membrane component
37	 57.03	-1	38430..39488	-	352	99079878	-	TM1040_0037	-	binding-protein-dependent transport systems inner membrane component
38	 59.16	0	39490..41088	-	532	99079879	-	TM1040_0038	-	extracellular solute-binding protein
39	 60.19	0	41146..42195	-	349	99079880	-	TM1040_0039	-	dipeptidase AC
40	 59.65	0	42535..43575	+	346	99079881	-	TM1040_0040	-	alcohol dehydrogenase GroES-like protein
41	 64.00	+1	43680..44879	+	399	99079882	-	TM1040_0041	-	HI0933-like protein
42	 60.07	0	44852..45442	-	196	99079883	-	TM1040_0042	-	glutathione S-transferase-like
43	 63.17	0	45518..46546	-	342	99079884	-	TM1040_0043	-	DNA polymerase III, delta subunit
44	 61.99	0	46543..47076	-	177	99079885	-	TM1040_0044	-	putative lipoprotein
45	 59.60	0	47063..49636	-	857	99079886	leuS	TM1040_0045	-	leucyl-tRNA synthetase
46	 59.92	0	49724..50212	-	162	99079887	-	TM1040_0046	-	hypothetical protein
47	 61.06	0	50494..51438	+	314	99079888	-	TM1040_0047	-	outer membrane porin
48	 58.75	0	51557..52213	+	218	99079889	-	TM1040_0048	-	hypothetical protein
49	 63.60	+1	52205..52660	-	151	99079890	-	TM1040_0049	-	hypothetical protein
50	 60.97	0	52702..53790	-	362	99079891	-	TM1040_0050	-	GTP cyclohydrolase II
51	 58.66	0	53960..54646	+	228	99079892	-	TM1040_0051	-	two component transcriptional regulator
52	 58.89	0	54785..55993	-	402	99079893	-	TM1040_0052	-	gamma-butyrobetaine,2-oxoglutarate dioxygenase
53	 58.56	0	56222..57010	+	262	99079894	-	TM1040_0053	-	exodeoxyribonuclease III
54	 63.14	0	57235..58170	+	311	99079895	-	TM1040_0054	-	thioredoxin domain-containing protein
55	 58.45	0	58198..58842	+	214	99079896	-	TM1040_0055	-	peptidase S16, lon-like
56	 60.22	0	58839..59024	+	61	99079897	-	TM1040_0056	-	hypothetical protein
57	 61.86	0	59044..60270	-	408	99079898	-	TM1040_0057	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase
58	 63.44	0	60494..61825	+	443	99079899	-	TM1040_0058	-	amidase
59	 60.39	0	61934..63112	+	392	99079900	-	TM1040_0059	-	aminotransferase
60	 61.65	0	63232..66279	+	1015	99079901	-	TM1040_0060	-	DNA translocase FtsK
61	 58.96	0	66347..66943	+	198	99079902	-	TM1040_0061	-	outer membrane lipoprotein carrier protein LolA
62	 59.35	0	67002..67589	-	195	99079903	-	TM1040_0062	-	hypothetical protein
63	 50.46	-2	67820..68146	+	108	99079904	-	TM1040_0063	-	hemimethylated DNA-binding region
64	 62.80	0	68184..69761	-	525	99079905	-	TM1040_0064	-	gamma-glutamyltransferase 2
65	 58.73	0	70069..70509	-	146	99079906	-	TM1040_0065	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
66	 58.26	0	70543..70887	-	114	99079907	-	TM1040_0066	-	anti-sigma-factor antagonist
67	 64.02	+1	70985..72157	+	390	99079908	-	TM1040_0067	-	Acetyl-CoA C-acetyltransferase
68	 62.18	0	72257..72724	+	155	99079909	-	TM1040_0068	-	putative GAF sensor protein
69	 60.95	0	72740..73369	+	209	99079910	-	TM1040_0069	-	lysine exporter protein LysE/YggA
70	 56.45	-1	73397..73768	+	123	99079911	-	TM1040_0070	-	glutathione-dependent formaldehyde-activating, GFA
71	 59.08	0	73920..74855	+	311	99079912	-	TM1040_0071	-	rarD protein
72	 58.26	0	74929..75582	+	217	99079913	-	TM1040_0072	-	ribosomal large subunit pseudouridine synthase A
73	 61.48	0	75566..76279	-	237	99079914	-	TM1040_0073	-	AraC family transcriptional regulator
74	 61.82	0	76421..77863	-	480	99079915	-	TM1040_0074	-	aldehyde dehydrogenase
75	 57.60	0	78109..78759	+	216	99079916	-	TM1040_0075	-	1-Cys peroxiredoxin
76	 56.99	-1	78842..79999	-	385	99079917	-	TM1040_0076	-	lipopolysaccharide biosynthesis protein-like
77	 62.73	0	80070..80933	-	287	99079918	-	TM1040_0077	-	glycosyl transferase family protein
78	 59.46	0	81035..83170	-	711	99079919	-	TM1040_0078	-	polynucleotide phosphorylase/polyadenylase
79	 73.02	+2	83364..83552	-	62	99079920	-	TM1040_0079	-	hypothetical protein
80	 61.89	0	83627..84841	-	404	99079921	-	TM1040_0080	-	cobalamin synthesis protein, P47K
81	 52.96	-2	85005..85274	-	89	99079922	rpsO	TM1040_0081	-	30S ribosomal protein S15
82	 62.92	0	85539..86606	-	355	99079923	-	TM1040_0082	-	type I secretion target repeat-containing protein
83	 60.92	0	86710..87231	-	173	99079924	-	TM1040_0083	-	hypothetical protein
84	 60.84	0	87460..88368	-	302	99079925	truB	TM1040_0084	-	tRNA pseudouridine synthase B
85	 60.21	0	88426..89199	-	257	99079926	-	TM1040_0085	-	hypothetical protein
86	 60.61	0	89204..89599	-	131	99079927	rbfA	TM1040_0086	-	ribosome-binding factor A
87	 61.98	0	89693..90502	+	269	99079928	-	TM1040_0087	-	dihydrodipicolinate reductase
88	 63.08	0	90697..90891	-	64	99079929	-	TM1040_0088	-	hypothetical protein
89	 64.00	+1	90990..92264	+	424	99079930	-	TM1040_0089	-	Fmu (Sun)
90	 63.46	0	92456..94201	+	581	99079931	-	TM1040_0090	-	heparinase II/III-like
91	 61.82	0	94226..95815	+	529	99079932	purH	TM1040_0091	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
92	 57.35	0	95835..96317	+	160	99079933	-	TM1040_0092	-	signal peptidase II
93	 63.71	+1	96470..96976	+	168	99079934	-	TM1040_0093	-	hypothetical protein
94	 61.99	0	97110..98543	+	477	99079935	-	TM1040_0094	-	peptidase M16-like
95	 60.77	0	98540..99913	+	457	99079936	-	TM1040_0095	-	peptidase M16-like
96	 62.65	0	100018..102360	-	780	99079937	-	TM1040_0096	-	aldehyde dehydrogenase
97	 64.58	+1	102371..103426	-	351	99079938	-	TM1040_0097	-	deoxyribose-phosphate aldolase
98	 63.86	+1	103637..104599	+	320	99079939	-	TM1040_0098	-	twin-arginine translocation pathway signal
99	 61.34	0	104599..105405	+	268	99079940	-	TM1040_0099	-	ABC transporter related
100	 64.26	+1	105437..106639	+	400	99079941	-	TM1040_0100	-	hypothetical protein
60.41	MEAN

3.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.