IslandPath Analysis: Vibrio parahaemolyticus RIMD 2210633



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.42   STD DEV: 3.45
Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete sequence - 1..3288558
3080 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.82	0	371..805	-	144	28896775	-	VP0001	-	flavodoxin
2	 51.40	+1	910..2271	-	453	28896776	trmE	VP0002	-	tRNA modification GTPase TrmE
3	 47.63	0	2389..4011	-	540	28896777	-	VP0003	-	putative inner membrane protein translocase component YidC
4	 44.26	0	4238..4594	-	118	28896778	rnpA	VP0004	-	ribonuclease P
5	 48.89	+1	4608..4742	-	44	28896779	rpmH	VP0005	-	50S ribosomal protein L34
6	 48.24	0	4984..5721	-	245	28896780	-	VP0006	-	amino acid ABC transporter, ATP-binding protein
7	 47.17	0	5718..6389	-	223	28896781	-	VP0007	-	amino acid ABC transproter, permease protein
8	 46.99	0	6505..7251	-	248	28896782	-	VP0008	-	amino acid ABC transporter, periplasmic amino acid-binding portion
9	 41.33	-1	7391..7540	+	49	28896783	-	VP0009	-	hypothetical protein
10	 40.74	-1	7500..7634	+	44	28896784	-	VP0010	-	hypothetical protein
11	 49.75	+1	7680..9086	+	468	28896785	dnaA	VP0011	-	chromosomal replication initiation protein
12	 48.86	0	9150..10250	+	366	28896786	-	VP0012	-	DNA polymerase III subunit beta
13	 45.37	0	10260..11339	+	359	28896787	recF	VP0013	-	recombination protein F
14	 47.97	0	11353..13770	+	805	28896788	gyrB	VP0014	-	DNA gyrase subunit B
15	 41.23	-1	13932..14045	+	37	28896789	-	VP0015	-	hypothetical protein
16	 48.20	0	14119..14535	+	138	28896790	-	VP0016	-	hypothetical protein
17	 41.03	-1	14551..14667	+	38	28896791	-	VP0017	-	hypothetical protein
18	 44.06	0	15073..15510	+	145	28896792	-	VP0018	-	16 kDa heat shock protein A
19	 48.09	0	15595..16848	-	417	28896793	avtA	VP0019	-	valine--pyruvate transaminase
20	 49.30	+1	17066..19150	-	694	28896794	malS	VP0020	-	periplasmic alpha-amylase precursor
21	 48.14	0	19368..21434	-	688	28896795	glyS	VP0021	-	glycyl-tRNA synthetase subunit beta
22	 47.49	0	21448..22365	-	305	28896796	glyQ	VP0022	-	glycyl-tRNA synthetase subunit alpha
23	 46.67	0	22847..23401	+	184	28896797	-	VP0023	-	hypothetical protein
24	 44.83	0	23608..23868	+	86	28896798	-	VP0024	-	NADH dehydrogenase subunit II-related protein
25	 46.59	0	23913..24161	-	82	28896799	-	VP0025	-	cell developmental protein SirA
26	 43.17	0	24294..24476	+	60	28896800	-	VP0026	-	hypothetical protein
27	 49.55	+1	24591..25583	+	330	28896801	-	VP0027	-	LysR family transcriptional regulator
28	 50.76	+1	25673..26653	-	326	28896802	-	VP0028	-	zinc-binding alcohol dehydrogenase
29	 51.28	+1	26892..28067	-	391	28896803	fadA	VP0029	-	3-ketoacyl-CoA thiolase
30	 48.39	0	28083..30254	-	723	28896804	fadB	VP0030	-	multifunctional fatty acid oxidation complex subunit alpha
31	 47.76	0	30512..31135	+	207	28896805	-	VP0031	-	hypothetical protein
32	 47.74	0	31182..32639	+	485	28896806	-	VP0032	-	potassium uptake protein TrkH
33	 40.53	-1	32649..33176	+	175	28896807	hemG	VP0033	-	protoporphyrinogen oxidase
34	 42.99	0	39060..39950	-	296	28896808	-	VP0034	-	DNA-binding transcriptional regulator IlvY
35	 45.72	0	40094..41578	+	494	28896809	-	VP0035	-	ketol-acid reductoisomerase
36	 38.89	-1	41762..42013	-	83	28896810	-	VP0036	-	hypothetical protein
37	 38.89	-1	42055..42162	+	35	28896811	-	VP0037	-	hypothetical protein
38	 47.68	0	42145..45267	-	1040	28896812	-	VP0038	-	putative multidrug resistance protein
39	 44.72	0	45279..46385	-	368	28896813	-	VP0039	-	hypothetical protein
40	 47.08	0	46404..46985	-	193	28896814	-	VP0040	-	TetR family transcriptional regulator
41	 47.32	0	47155..49170	+	671	28896815	-	VP0041	-	ATP-dependent DNA helicase Rep
42	 48.31	0	49263..49676	-	137	28896816	-	VP0042	-	cytochrome c5
43	 45.58	0	50640..50786	-	48	28896817	-	VP0043	-	hypothetical protein
44	 45.87	0	50821..51546	-	241	28896818	-	VP0044	-	hypothetical protein
45	 42.59	0	51603..51710	-	35	28896819	-	VP0045	-	hypothetical protein
46	 37.99	-2	51950..52228	+	92	28896820	-	VP0046	-	hypothetical protein
47	 48.60	0	52216..53931	+	571	28896821	-	VP0047	-	peptide ABC transporter, ATP-binding protein
48	 47.81	0	54024..55577	+	517	28896822	-	VP0048	-	peptide ABC transporter, periplasmic peptide-binding protein
49	 48.10	0	55702..56730	+	342	28896823	-	VP0049	-	peptide ABC transporter, permease protein
50	 49.74	+1	56733..57689	+	318	28896824	-	VP0050	-	peptide ABC transporter, permease protein
51	 40.86	-1	57774..57866	-	30	28896825	-	VP0052	-	hypothetical protein
52	 49.55	+1	57846..58850	+	334	28896826	-	VP0051	-	hypothetical protein
53	 46.21	0	59090..61411	-	773	28896827	-	VP0053	-	hypothetical protein
54	 46.29	0	61675..63249	-	524	28896828	-	VP0054	-	hypothetical protein
55	 47.64	0	63253..63825	-	190	28896829	-	VP0055	-	putative RNA polymerase ECF-type sigma factor
56	 48.40	0	63828..65300	-	490	28896830	-	VP0056	-	hypothetical protein
57	 47.82	0	65314..66666	-	450	28896831	-	VP0057	-	hypothetical protein
58	 48.20	0	66784..67893	+	369	28896832	-	VP0058	-	gluconate utilization system Gnt-I transcriptional repressor
59	 49.89	+1	67949..68884	+	311	28896833	-	VP0059	-	LysR family transcriptional regulator
60	 47.16	0	69154..69558	+	134	28896834	-	VP0060	-	putative multidrug transmembrane resistance signal peptide protein
61	 48.48	0	69555..69884	+	109	28896835	-	VP0061	-	putative multidrug transmembrane resistance signal peptide protein
62	 53.20	+2	69959..71755	-	598	28896836	-	VP0062	-	phosphogluconate dehydratase
63	 48.95	+1	71755..72279	-	174	28896837	-	VP0063	-	thermoresistant gluconokinase
64	 49.31	+1	72433..73809	+	458	28896838	-	VP0064	-	putative gluconate permease
65	 50.82	+1	73819..74430	+	203	28896839	-	VP0065	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
66	 50.47	+1	74536..75393	-	285	28896840	-	VP0066	-	purine nucleoside phosphorylase
67	 46.84	0	75455..76387	+	310	28896841	-	VP0067	-	LysR family regulatory protein
68	 48.90	+1	76469..77836	-	455	28896842	-	VP0068	-	glutathione reductase
69	 51.67	+1	78084..78923	-	279	28896843	-	VP0069	-	hypothetical protein
70	 50.95	+1	79323..81365	+	680	28896844	-	VP0070	-	oligopeptidase A
71	 46.88	0	81432..81896	-	154	161511063	-	VP0072	-	DNA-binding transcriptional regulator AsnC
72	 49.03	+1	82010..85150	+	1046	28896846	-	VP0071	-	sensory box/GGDEF family protein
73	 54.23	+2	85240..86019	+	259	28896847	-	VP0073	-	hypothetical protein
74	 48.69	0	86206..86778	+	190	28896848	-	VP0074	-	hypothetical protein
75	 49.03	+1	86850..87728	-	292	28896849	-	VP0075	-	MadN protein
76	 44.60	0	87793..88218	-	141	28896850	-	VP0076	-	universal stress protein A
77	 42.23	0	88446..88973	+	175	28896851	-	VP0077	-	ferritin
78	 45.37	0	89064..89387	+	107	28896852	-	VP0078	-	universal stress protein UspB
79	 50.17	+1	89545..90738	+	397	28896853	-	VP0079	-	hypothetical protein
80	 49.26	+1	90824..92167	-	447	28896854	-	VP0080	-	putative sigma-54 interacting response regulator transcription regulator protein
81	 39.13	-1	92601..93152	+	183	28896855	-	VP0081	-	putative hyperosmotically inducible periplasmic protein
82	 41.24	-1	93198..93374	+	58	28896856	-	VP0082	-	putative transmembrane protein
83	 42.93	0	93383..93580	+	65	28896857	-	VP0083	-	hypothetical protein
84	 48.38	0	93672..94103	+	143	28896858	-	VP0084	-	hypothetical protein
85	 50.79	+1	94138..95775	+	545	28896859	-	VP0085	-	hypothetical protein
86	 40.85	-1	96009..96407	-	132	28896860	-	VP0086	-	hypothetical protein
87	 44.44	0	96524..96955	-	143	28896861	-	VP0087	-	hypothetical protein
88	 43.19	0	97224..97649	+	141	28896862	-	VP0088	-	hypothetical protein
89	 50.10	+1	97693..98205	+	170	28896863	-	VP0089	-	hypothetical protein
90	 50.43	+1	98150..98500	+	116	28896864	-	VP0090	-	hypothetical protein
91	 48.30	0	98510..99538	+	342	28896865	-	VP0091	-	putative permease protein
92	 49.34	+1	99571..102006	-	811	28896866	-	VP0092	-	hypothetical protein
93	 48.95	+1	102220..103128	-	302	28896867	-	VP0093	-	hypothetical protein
94	 49.06	+1	103298..104842	+	514	28896868	-	VP0094	-	hypothetical protein
95	 48.21	0	104921..105700	+	259	28896869	ubiE	VP0095	-	ubiquinone/menaquinone biosynthesis methyltransferase
96	 47.96	0	105712..106347	+	211	28896870	-	VP0096	-	hypothetical protein
97	 48.81	0	106344..107978	+	544	28896871	ubiB	VP0097	-	putative ubiquinone biosynthesis protein UbiB
98	 40.65	-1	108027..108272	+	81	28896872	tatA	VP0098	-	twin argininte translocase protein A
99	 45.11	0	108276..108674	+	132	28896873	-	VP0099	-	sec-independent translocase
100	 47.37	0	108743..109483	+	246	28896874	-	VP0100	-	hypothetical protein
45.42	MEAN

3.45	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.