IslandPath Analysis: Yersinia pestis Nepal516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.91   STD DEV: 4.91
Yersinia pestis Nepal516, complete genome - 1..4534590
3981 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	-1	270..710	-	146	108810167	-	YPN_0001	-	flavodoxin
2	 41.34	-1	803..1264	-	153	108810168	-	YPN_0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1434..2426	+	330	108810169	-	YPN_0003	-	asparagine synthetase AsnA
4	 47.72	0	2525..3991	-	488	108810170	yieM	YPN_0004	-	hypothetical protein
5	 46.65	0	3995..5548	-	517	108810171	-	YPN_0005	-	regulatory ATPase RavA
6	 45.80	0	5822..7690	+	622	108810172	trkD	YPN_0006	-	potassium transport protein Kup
7	 48.10	0	7895..8314	+	139	108810173	-	YPN_0007	-	D-ribose pyranase
8	 50.05	0	8365..9291	+	308	108810174	-	YPN_0008	-	ribokinase
9	 49.71	0	9344..9514	+	56	108810175	-	YPN_0009	-	hypothetical protein
10	 46.46	0	9511..10935	-	474	108810176	-	YPN_0010	-	membrane transport protein
11	 44.06	0	11015..11704	-	229	108810177	-	YPN_0011	-	GntR-famly transcriptional regulator
12	 44.52	0	18389..19318	+	309	108810178	-	YPN_0012	-	homoserine O-succinyltransferase
13	 26.00	-2	19511..19660	-	49	108810179	-	YPN_0013	-	hypothetical protein
14	 47.90	0	19738..21336	+	532	108810180	-	YPN_0014	-	malate synthase
15	 51.30	0	21383..22690	+	435	108810181	-	YPN_0015	-	isocitrate lyase
16	 46.41	0	22946..24673	+	575	108810182	aceK	YPN_0016	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
17	 53.70	+1	24793..25386	-	197	108810183	-	YPN_0017	-	repressor of aceBA operon
18	 51.92	0	25852..29547	+	1231	108810184	metH	YPN_0018	-	B12-dependent methionine synthase
19	 44.58	0	29643..34550	-	1635	108810185	-	YPN_0019	-	hemolysin
20	 47.47	0	34620..36119	-	499	108810186	-	YPN_0020	-	hemolysin activator protein
21	 46.84	0	36049..36396	-	115	108810187	-	YPN_0021	-	hypothetical protein
22	 52.74	0	36877..38262	-	461	108810188	-	YPN_0022	-	aspartate kinase III
23	 48.69	0	38632..40278	+	548	108810189	pgi	YPN_0023	-	glucose-6-phosphate isomerase
24	 38.97	-1	40413..40820	+	135	108810190	-	YPN_0024	-	phosphate-starvation-inducible protein PsiE
25	 52.75	0	40963..41853	-	296	108810191	malG	YPN_0025	-	maltose transporter permease
26	 48.42	0	41867..43444	-	525	108810192	malF	YPN_0026	-	maltose transporter membrane protein
27	 48.60	0	43631..44842	-	403	108810193	malE	YPN_0027	-	maltose ABC transporter periplasmic protein
28	 53.59	+1	45430..45666	+	78	108810194	-	YPN_0028	-	hypothetical protein
29	 53.51	+1	45670..46779	+	369	108810195	-	YPN_0029	-	maltose/maltodextrin transporter ATP-binding protein
30	 48.66	0	46850..48121	+	423	108810196	lamB	YPN_0030	-	maltoporin
31	 51.64	0	48362..49273	+	303	108810197	-	YPN_0031	-	maltose regulon periplasmic protein
32	 31.87	-2	49612..50022	+	136	108810198	-	YPN_0032	-	hypothetical protein
33	 48.94	0	50174..50692	-	172	108810199	-	YPN_0033	-	hypothetical protein
34	 43.78	0	51216..51713	+	165	108810200	-	YPN_0034	-	hypothetical protein
35	 49.60	0	51781..53262	+	493	108810201	-	YPN_0035	-	hypothetical protein
36	 47.62	0	53269..53709	+	146	108810202	-	YPN_0036	-	hypothetical protein
37	 48.00	0	53709..54935	+	408	108810203	-	YPN_0037	-	hypothetical protein
38	 46.44	0	54825..55610	-	261	108810204	-	YPN_0038	-	transposase for insertion sequence IS1661
39	 49.15	0	55664..56308	-	214	108810205	-	YPN_0039	-	insertion element IS1661 DNA-binding protein
40	 52.56	0	56921..59557	-	878	108810206	-	YPN_0040	-	phosphoenolpyruvate carboxylase
41	 50.43	0	59931..61094	-	387	108810207	-	YPN_0041	-	acetylornithine deacetylase
42	 50.45	0	61345..62349	+	334	108810208	argC	YPN_0042	-	N-acetyl-gamma-glutamyl-phosphate reductase
43	 50.97	0	62515..63291	+	258	108810209	-	YPN_0043	-	acetylglutamate kinase
44	 50.66	0	63458..64831	+	457	108810210	-	YPN_0044	-	argininosuccinate lyase
45	 44.36	0	65430..67922	+	830	108810211	-	YPN_0045	-	TonB dependent receptor protein
46	 42.23	-1	68144..68761	+	205	108810212	-	YPN_0046	-	hemophore HasA
47	 49.06	0	68918..70735	+	605	108810213	-	YPN_0047	-	ABC transporter protein
48	 48.68	0	70811..72139	+	442	108810214	-	YPN_0048	-	HlyD family secretion protein
49	 47.26	0	72204..73007	+	267	108810215	-	YPN_0049	-	membrane protein
50	 51.71	0	73123..74586	-	487	108810216	-	YPN_0050	-	dihydrolipoamide dehydrogenase
51	 46.31	0	74681..75412	-	243	108810217	-	YPN_0051	-	peroxiredoxin/glutaredoxin family protein
52	 48.80	0	75559..76476	+	305	108810218	-	YPN_0052	-	DNA-binding transcriptional regulator OxyR
53	 48.47	0	76459..77859	-	466	108810219	-	YPN_0053	-	soluble pyridine nucleotide transhydrogenase
54	 51.57	0	78077..78712	+	211	108810220	-	YPN_0054	-	DNA-binding transcriptional repressor FabR
55	 46.81	0	78725..79132	+	135	108810221	-	YPN_0055	-	hypothetical protein
56	 47.74	0	79266..80369	-	367	108810222	-	YPN_0056	-	tRNA (uracil-5-)-methyltransferase
57	 46.52	0	80831..82726	+	631	108810223	btuB	YPN_0057	-	vitamin B12/cobalamin outer membrane transporter
58	 48.73	0	82671..83534	+	287	162139457	-	YPN_0058	-	glutamate racemase
59	 46.50	0	90393..91349	+	318	108810225	-	YPN_0059	-	periplasmic protein precursor
60	 45.88	0	91435..92925	+	496	108810226	-	YPN_0060	-	sugar transport system ATP-binding protein
61	 48.82	0	92937..93956	+	339	108810227	-	YPN_0061	-	sugar transport system permease
62	 45.12	0	93956..94948	+	330	108810228	-	YPN_0062	-	inner membrane ABC transporter permease protein YjfF
63	 47.51	0	94935..95816	-	293	108810229	-	YPN_0063	-	transcriptional regulator HdfR
64	 48.94	0	95851..96273	+	140	108810230	-	YPN_0064	-	hypothetical protein
65	 53.41	+1	96530..98053	-	507	108810231	-	YPN_0065	-	magnesium chelatase family protein
66	 53.25	+1	98676..100322	+	548	108810232	-	YPN_0066	-	acetolactate synthase 2 catalytic subunit
67	 49.22	0	100319..100576	+	85	108810233	ilvM	YPN_0067	-	acetolactate synthase 2 regulatory subunit
68	 51.56	0	100599..101525	+	308	108810234	-	YPN_0068	-	branched-chain amino acid aminotransferase
69	 53.11	+1	101836..103686	+	616	108810235	-	YPN_0069	-	dihydroxy-acid dehydratase
70	 53.66	+1	103692..105236	+	514	108810236	-	YPN_0070	-	threonine dehydratase
71	 33.12	-2	105367..105831	-	154	108810237	-	YPN_0071	-	membrane protein
72	 34.20	-2	105911..106372	-	153	108810238	-	YPN_0072	-	membrane protein
73	 34.20	-2	106452..106913	-	153	108810239	-	YPN_0073	-	membrane protein
74	 39.48	-1	106897..107775	-	292	108810240	-	YPN_0074	-	hypothetical protein
75	 38.57	-1	108423..108632	+	69	108810241	-	YPN_0075	-	hypothetical protein
76	 52.72	0	108687..109568	-	293	108810242	-	YPN_0076	-	DNA-binding transcriptional regulator IlvY
77	 50.30	0	109854..111332	+	492	108810243	-	YPN_0077	-	ketol-acid reductoisomerase
78	 42.79	-1	111513..111713	+	66	108810244	-	YPN_0078	-	hypothetical protein
79	 48.09	0	111909..113351	+	480	108810245	-	YPN_0079	-	colicin
80	 35.23	-2	113351..113614	+	87	108810246	-	YPN_0080	-	hypothetical protein
81	 34.50	-2	114120..114377	+	85	108810247	-	YPN_0081	-	colicin immunity protein
82	 44.65	0	114830..114988	-	52	108810248	-	YPN_0082	-	hypothetical protein
83	 48.23	0	115012..115830	-	272	108810249	-	YPN_0083	-	chaperone protein
84	 49.06	0	115796..117175	-	459	108810250	-	YPN_0084	-	hypothetical protein
85	 47.11	0	117180..119807	-	875	108810251	-	YPN_0085	-	outer membrane usher protein
86	 42.21	-1	119835..120566	-	243	108810252	-	YPN_0086	-	fimbrial chaperone
87	 43.69	0	120630..121160	-	176	108810253	-	YPN_0087	-	fimbrial protein
88	 49.63	0	121970..123178	-	402	108810254	-	YPN_0088	-	transposase for the IS285 insertion element
89	 34.09	-2	123275..124066	-	263	108810255	-	YPN_0089	-	hypothetical protein
90	 45.04	0	124305..124586	-	93	108810256	-	YPN_0090	-	peptidyl-prolyl cis-trans isomerase C
91	 48.71	0	124790..126811	+	673	108810257	-	YPN_0091	-	ATP-dependent DNA helicase Rep
92	 49.76	0	126979..128037	-	352	108810258	-	YPN_0092	-	guanosine-5'-triphosphate,3'-diphosphate diphosphatase
93	 51.87	0	127968..128474	-	168	108810259	-	YPN_0093	-	hypothetical protein
94	 48.64	0	128478..129764	-	428	108810260	-	YPN_0094	-	ATP-dependent RNA helicase RhlB
95	 46.18	0	129883..130209	+	108	108810261	-	YPN_0095	-	thioredoxin 1
96	 45.87	0	130689..131948	+	419	108810262	rho	YPN_0096	-	transcription termination factor Rho
97	 46.91	0	132498..133580	+	360	108810263	-	YPN_0097	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
98	 48.49	0	133616..134677	+	353	162139456	-	YPN_0098	-	lipopolysaccharide biosynthesis protein WzzE
99	 50.30	0	134904..136088	+	394	108810265	-	YPN_0099	-	UDP-N-acetylglucosamine 2-epimerase
100	 49.80	0	136085..137347	+	420	108810266	wecC	YPN_0100	-	UDP-N-acetyl-D-mannosamine dehydrogenase
47.91	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.