IslandPath Analysis: Rhodopseudomonas palustris HaA2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.14   STD DEV: 3.54
Rhodopseudomonas palustris HaA2, complete genome - 1..5331656
4683 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.81	0	676..2094	+	472	86747128	dnaA	RPB_0001	-	chromosomal replication initiation protein
2	 66.13	0	2356..3474	+	372	86747129	-	RPB_0002	-	DNA polymerase III subunit beta
3	 60.75	-1	3640..4011	+	123	86747130	-	RPB_0003	-	hypothetical protein
4	 71.50	+1	4098..5234	+	378	86747131	recF	RPB_0004	-	recombination protein F
5	 66.01	0	5462..7903	+	813	86747132	gyrB	RPB_0005	-	DNA gyrase subunit B
6	 68.15	0	7925..9004	-	359	86747133	-	RPB_0006	-	methyl-accepting chemotaxis sensory transducer
7	 63.92	0	9197..9706	-	169	86747134	-	RPB_0007	-	AsnC family transcriptional regulator
8	 68.10	0	9854..10132	-	92	86747135	-	RPB_0008	-	hypothetical protein
9	 69.12	0	10273..10476	-	67	86747136	-	RPB_0009	-	hypothetical protein
10	 69.09	0	10492..10656	-	54	86747137	-	RPB_0010	-	cytochrome oxidase maturation protein, cbb3-type
11	 69.54	0	10656..12851	-	731	86747138	-	RPB_0011	-	heavy metal translocating P-type ATPase
12	 68.26	0	12887..13387	-	166	86747139	-	RPB_0012	-	FixH
13	 65.50	0	13407..14954	-	515	86747140	-	RPB_0013	-	4Fe-4S ferredoxin, iron-sulfur binding
14	 66.21	0	14983..15864	-	293	86747141	-	RPB_0014	-	cytochrome c oxidase, cbb3-type, subunit III
15	 60.61	-1	15872..16036	-	54	86747142	-	RPB_0015	-	Cbb3-type cytochrome oxidase component
16	 62.59	-1	16046..16780	-	244	86747143	-	RPB_0016	-	cytochrome c oxidase, cbb3-type, subunit II
17	 64.12	0	16792..18438	-	548	86747144	-	RPB_0017	-	cytochrome c oxidase, cbb3-type, subunit I
18	 69.38	0	18787..19707	-	306	86747145	-	RPB_0018	-	2-dehydropantoate 2-reductase
19	 68.29	0	19785..20522	-	245	86747146	-	RPB_0019	-	short-chain dehydrogenase/reductase SDR
20	 64.84	0	20675..21277	-	200	86747147	-	RPB_0020	-	DSBA oxidoreductase
21	 66.37	0	21526..22194	+	222	86747148	-	RPB_0021	-	glutathione S-transferase-like protein
22	 66.44	0	22420..23301	-	293	86747149	-	RPB_0022	-	short chain dehydrogenase
23	 66.87	0	23383..23877	-	164	86747150	-	RPB_0023	-	hypothetical protein
24	 66.89	0	23874..24752	-	292	86747151	-	RPB_0024	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
25	 63.77	0	24749..25024	-	91	86747152	-	RPB_0025	-	glutaredoxin GrxC
26	 70.20	+1	25063..25827	-	254	86747153	-	RPB_0026	-	phosphoribosyltransferase
27	 65.23	0	25947..26294	+	115	86747154	-	RPB_0027	-	hypothetical protein
28	 71.10	+1	26356..27189	+	277	86747155	-	RPB_0028	-	hypothetical protein
29	 66.18	0	27426..27839	-	137	86747156	-	RPB_0029	-	NUDIX hydrolase
30	 68.04	0	27958..29199	-	413	86747157	argJ	RPB_0030	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
31	 71.37	+1	29453..29962	-	169	86747158	-	RPB_0031	-	OsmC-like protein
32	 66.60	0	30131..32929	+	932	86747159	-	RPB_0032	-	PII uridylyl-transferase
33	 67.22	0	33043..33582	+	179	86747160	-	RPB_0033	-	MarR family transcriptional regulator
34	 69.35	0	33579..34025	+	148	86747161	-	RPB_0034	-	hypothetical protein
35	 69.41	0	34035..36800	-	921	86747162	-	RPB_0035	-	multi-sensor hybrid histidine kinase
36	 66.67	0	36947..37375	-	142	86747163	-	RPB_0036	-	hypothetical protein
37	 65.85	0	37459..37827	+	122	86747164	-	RPB_0037	-	hypothetical protein
38	 62.33	-1	37966..39186	+	406	86747165	-	RPB_0038	-	extracellular ligand-binding receptor
39	 64.73	0	39440..39697	+	85	86747166	-	RPB_0039	-	hypothetical protein
40	 67.06	0	39741..39992	-	83	86747167	-	RPB_0040	-	hypothetical protein
41	 68.75	0	40187..42394	+	735	86747168	-	RPB_0041	-	penicillin-binding protein 1A
42	 73.61	+2	42525..42956	-	143	86747169	-	RPB_0042	-	hypothetical protein
43	 58.71	-2	43356..43556	+	66	86747170	rpmI	RPB_0043	-	50S ribosomal protein L35
44	 66.39	0	43644..44003	+	119	86747171	rplT	RPB_0044	-	50S ribosomal protein L20
45	 64.89	0	44142..45266	+	374	86747172	pheS	RPB_0045	-	phenylalanyl-tRNA synthetase subunit alpha
46	 65.04	0	45527..46018	+	163	86747173	-	RPB_0046	-	hypothetical protein
47	 68.74	0	46160..48568	+	802	86747174	pheT	RPB_0047	-	phenylalanyl-tRNA synthetase subunit beta
48	 71.84	+1	48751..50181	-	476	86747175	-	RPB_0048	-	twin-arginine translocation pathway signal
49	 65.80	0	50507..51430	+	307	86747176	-	RPB_0049	-	hypothetical protein
50	 68.10	0	51434..53662	-	742	86747177	-	RPB_0050	-	diguanylate cyclase/phosphodiesterase
51	 70.32	+1	54035..54991	+	318	86747178	mepA	RPB_0051	-	penicillin-insensitive murein endopeptidase
52	 60.49	-1	55011..55415	-	134	86747179	-	RPB_0052	-	hypothetical protein
53	 68.12	0	55477..55956	-	159	86747180	-	RPB_0053	-	hypothetical protein
54	 68.69	0	56021..56614	-	197	86747181	-	RPB_0054	-	hypothetical protein
55	 67.67	0	56695..57093	-	132	86747182	-	RPB_0055	-	hypothetical protein
56	 68.62	0	57528..59321	-	597	86747183	-	RPB_0056	-	potassium/proton antiporter
57	 65.53	0	59695..61008	+	437	86747184	-	RPB_0057	-	MscS mechanosensitive ion channel
58	 64.48	0	61107..61931	+	274	86747185	-	RPB_0058	-	methionine aminopeptidase, type I
59	 67.75	0	62130..62684	-	184	86747186	-	RPB_0059	-	two component Fis family transcriptional regulator
60	 66.74	0	62851..64173	-	440	86747187	-	RPB_0060	-	periplasmic sensor signal transduction histidine kinase
61	 69.26	0	64282..65091	+	269	86747188	-	RPB_0061	-	ABC transporter related
62	 63.18	0	65088..65918	+	276	86747189	-	RPB_0062	-	hypothetical protein
63	 63.42	0	66038..67363	+	441	86747190	-	RPB_0063	-	polyhydroxyalkanoate depolymerase, intracellular
64	 67.62	0	67630..68466	+	278	86747191	-	RPB_0064	-	hypothetical protein
65	 58.45	-2	68769..69206	-	145	86747192	infC	RPB_0065	-	translation initiation factor IF-3
66	 61.73	-1	69327..69650	+	107	86747193	-	RPB_0066	-	hypothetical protein
67	 69.69	+1	69647..70441	+	264	86747194	-	RPB_0067	-	hypothetical protein
68	 70.78	+1	70581..71018	-	145	86747195	-	RPB_0068	-	hypothetical protein
69	 66.15	0	71018..71785	-	255	86747196	-	RPB_0069	-	hydroxyacylglutathione hydrolase
70	 70.07	+1	71962..72726	+	254	86747197	-	RPB_0070	-	methyltransferase type 11
71	 67.89	0	72806..73540	-	244	86747198	-	RPB_0071	-	hypothetical protein
72	 72.64	+1	74067..74936	-	289	86747199	-	RPB_0072	-	HemK family modification methylase
73	 48.97	-2	74942..75721	-	259	86747200	-	RPB_0073	-	hypothetical protein
74	 49.02	-2	75693..76202	-	169	86747201	-	RPB_0074	-	hypothetical protein
75	 66.11	0	76273..77358	-	361	162138527	prfA	RPB_0075	-	peptide chain release factor 1
76	 68.03	0	77432..79699	-	755	86747203	-	RPB_0076	-	phosphoenolpyruvate-protein phosphotransferase PtsP
77	 65.23	0	80003..81256	-	417	86747204	-	RPB_0077	-	aspartate kinase
78	 63.10	0	81424..81900	+	158	86747205	-	RPB_0078	-	hypothetical protein
79	 64.04	0	81916..82677	+	253	86747206	-	RPB_0079	-	3-demethylubiquinone-9 3-methyltransferase
80	 67.03	0	82852..83667	-	271	86747207	-	RPB_0080	-	hypothetical protein
81	 69.44	0	83751..84722	+	323	86747208	-	RPB_0081	-	DMT family permease
82	 70.36	+1	84920..86704	-	594	86747209	-	RPB_0082	-	gamma-glutamyltransferase
83	 68.32	0	86769..88157	+	462	86747210	-	RPB_0083	-	major facilitator transporter
84	 67.04	0	88475..90067	-	530	86747211	purH	RPB_0084	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
85	 68.55	0	90170..91924	-	584	86747212	-	RPB_0085	-	heparinase II/III-like
86	 70.58	+1	92238..93590	-	450	86747213	-	RPB_0086	-	RNA methyltransferase
87	 70.27	+1	93756..93977	+	73	86747214	-	RPB_0087	-	hypothetical protein
88	 70.64	+1	94073..94651	+	192	86747215	-	RPB_0088	-	SNase-like nuclease
89	 67.98	0	94763..96517	-	584	86747216	-	RPB_0089	-	alkaline phosphatase
90	 65.10	0	96815..98152	-	445	162138526	-	RPB_0090	-	argininosuccinate synthase
91	 68.19	0	98256..99044	-	262	86747218	-	RPB_0091	-	phosphoesterase, PA-phosphatase related
92	 69.31	0	99087..99578	-	163	86747219	-	RPB_0092	-	hypothetical protein
93	 65.25	0	99721..100920	-	399	86747220	-	RPB_0093	-	hypothetical protein
94	 67.17	0	101152..101751	-	199	86747221	-	RPB_0094	-	hypothetical protein
95	 66.05	0	102027..103001	+	324	86747222	-	RPB_0095	-	alcohol dehydrogenase
96	 68.42	0	103097..105265	-	722	86747223	-	RPB_0096	-	FAD dependent oxidoreductase
97	 67.95	0	105431..106054	+	207	86747224	-	RPB_0097	-	TetR family transcriptional regulator
98	 67.47	0	106070..106444	-	124	86747225	-	RPB_0098	-	hypothetical protein
99	 66.67	0	106532..106837	-	101	86747226	phhB	RPB_0099	-	pterin-4-alpha-carbinolamine dehydratase
100	 68.75	0	107004..108446	+	480	86747227	-	RPB_0100	-	TRAP transporter solute receptor TAXI family protein
66.14	MEAN

3.54	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.