^{version
1.0}

IslandPath Analysis: Streptococcus pyogenes M1 GAS

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.64 STD DEV: 3.66

Streptococcus pyogenes M1 GAS, complete genome - 1..1852441
1697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.41	-1	232..1587	+	451	15674251	dnaA	SPy_0002	-	chromosomal replication initiation protein
2	 33.16	-1	1742..2878	+	378	15674252	dnaN	SPy_0003	-	DNA polymerase III subunit beta
3	 32.32	-1	2953..3150	+	65	15674253	-	SPy_0004	-	hypothetical protein
4	 37.19	0	3480..4595	+	371	15674254	-	SPy_0006	-	translation-associated GTPase
5	 31.75	-1	4665..5234	+	189	15674255	pth	SPy_0007	-	peptidyl-tRNA hydrolase
6	 35.39	0	5237..8740	+	1167	15674256	trcF	SPy_0008	-	putative transcription-repair coupling factor
7	 30.98	-2	8879..9175	+	98	15674257	-	SPy_0009	-	hypothetical protein
8	 26.88	-2	9162..9533	+	123	15674258	divIC	SPy_0010	-	putative cell division protein (DivIC)
9	 31.55	-1	9668..10954	+	428	15674259	-	SPy_0012	-	hypothetical protein
10	 28.44	-2	10951..12237	+	428	15674260	-	SPy_0013	-	putative cell-cycle protein
11	 37.68	0	12806..14785	+	659	15674261	ftsH	SPy_0015	-	putative cell division protein
12	 33.12	-1	15110..16501	+	463	15674262	-	SPy_0016	-	putative amino acid permease
13	 40.77	0	30546..31742	+	398	15674263	-	SPy_0019	-	putative secreted protein
14	 39.04	0	31995..32957	+	320	15674264	prsA.2	SPy_0020	-	ribose-phosphate pyrophosphokinase
15	 31.35	-1	33143..33898	+	251	15674265	recO	SPy_0021	-	DNA repair protein RecO
16	 38.10	0	34001..35008	+	335	15674266	plsX	SPy_0022	-	putative glycerol-3-phosphate acyltransferase PlsX
17	 30.04	-2	35001..35243	+	80	15674267	acpP.2	SPy_0023	-	acyl carrier protein
18	 35.92	0	35364..36098	+	244	15674268	purC	SPy_0024	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
19	 44.62	+1	36174..39947	+	1257	15674269	-	SPy_0025	-	putative phosphoribosylformylglycinamidine synthase II
20	 39.11	0	40108..41562	+	484	15674270	purF	SPy_0026	-	amidophosphoribosyltransferase
21	 42.72	+1	41590..42612	+	340	15674271	purM	SPy_0027	-	phosphoribosylaminoimidazole synthetase
22	 46.49	+2	42780..43334	+	184	15674272	purN	SPy_0028	-	phosphoribosylglycinamide formyltransferase
23	 39.56	0	45123..46247	-	374	15674273	-	SPy_0031	-	putative choline binding protein
24	 48.74	+2	46500..47765	+	421	15674274	purD	SPy_0032	-	phosphoribosylamine--glycine ligase
25	 50.20	+2	48043..48534	+	163	15674275	purE	SPy_0033	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
26	 49.73	+2	48485..49594	+	369	15674276	purK	SPy_0034	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
27	 29.87	-2	49621..51264	+	547	15674277	abiR	SPy_0035	-	abortive infection phage resistance protein
28	 44.93	+1	51282..52574	+	430	15674278	purB	SPy_0036	-	adenylosuccinate lyase
29	 29.39	-2	52706..53617	+	303	15674279	-	SPy_0037	-	hypothetical protein
30	 39.64	0	53843..54841	+	332	15674280	ruvB	SPy_0038	-	Holliday junction DNA helicase B
31	 35.62	0	54979..55416	+	145	15674281	-	SPy_0039	-	putative protein-tyrosine phosphatase
32	 36.07	0	55439..55840	+	133	15674282	-	SPy_0040	-	hypothetical protein
33	 36.54	0	55837..57612	+	591	15674283	-	SPy_0041	-	putative acyltransferase
34	 42.28	0	60815..61831	+	338	15674284	adhA	SPy_0044	-	alcohol dehydrogenase
35	 41.14	0	62219..63511	+	430	15674285	-	SPy_0045	-	Na+ driven multidrug efflux pump
36	 40.13	0	63712..64020	+	102	15674286	rpsJ	SPy_0047	-	30S ribosomal protein S10
37	 41.63	0	64268..64894	+	208	15674287	rplC	SPy_0049	-	50S ribosomal protein L3
38	 42.47	+1	64918..65541	+	207	15674288	rplD	SPy_0050	-	50S ribosomal protein L4
39	 37.71	0	65541..65837	+	98	15674289	rplW	SPy_0051	-	50S ribosomal protein L23
40	 43.53	+1	65855..66688	+	277	15674290	rplB	SPy_0052	-	50S ribosomal protein L2
41	 40.50	0	66827..67105	+	92	15674291	rpsS	SPy_0053	-	30S ribosomal protein S19
42	 39.71	0	67121..67465	+	114	15674292	rplV	SPy_0055	-	50S ribosomal protein L22
43	 41.59	0	67478..68131	+	217	15674293	rpsC	SPy_0056	-	30S ribosomal protein S3
44	 43.24	+1	68135..68548	+	137	15674294	rplP	SPy_0057	-	50S ribosomal protein L16
45	 34.78	-1	68558..68764	+	68	15674295	rpmC	SPy_0059	-	50S ribosomal protein L29
46	 38.31	0	68790..69050	+	86	15674296	rpsQ	SPy_0060	-	30S ribosomal protein S17
47	 44.17	+1	69075..69443	+	122	15674297	rplN	SPy_0061	-	50S ribosomal protein L14
48	 36.27	0	69522..69827	+	101	15674298	rplX	SPy_0062	-	50S ribosomal protein L24
49	 40.52	0	69851..70393	+	180	15674299	rplE	SPy_0063	-	50S ribosomal protein L5
50	 39.25	0	70409..70594	+	61	15674300	rpsN	SPy_0064	-	30S ribosomal protein S14
51	 36.59	0	70745..71143	+	132	15674301	rpsH	SPy_0065	-	30S ribosomal protein S8
52	 39.11	0	71346..71882	+	178	15674302	rplF	SPy_0066	-	50S ribosomal protein L6
53	 45.94	+1	71987..72343	+	118	15674303	rplR	SPy_0067	-	50S ribosomal protein L18
54	 42.42	+1	72362..72856	+	164	15674304	rpsE	SPy_0069	-	30S ribosomal protein S5
55	 37.16	0	72871..73053	+	60	15674305	rpmD	SPy_0071	-	50S ribosomal protein L30
56	 39.68	0	73267..73707	+	146	15674306	rplO	SPy_0072	-	50S ribosomal protein L15
57	 36.40	0	73724..75028	+	434	15674307	secY	SPy_0073	-	preprotein translocase subunit SecY
58	 39.44	0	75178..75816	+	212	15674308	adk	SPy_0074	-	adenylate kinase
59	 36.99	0	75934..76152	+	72	15674309	infA	SPy_0075	-	translation initiation factor IF-1
60	 37.61	0	76178..76294	+	38	15674310	rpmJ	SPy_0076	-	50S ribosomal protein L36
61	 39.34	0	76312..76677	+	121	15674311	rpsM	SPy_0077	-	30S ribosomal protein S13
62	 44.27	+1	76695..77078	+	127	15674312	rpsK	SPy_0078	-	30S ribosomal protein S11
63	 38.02	0	77124..78062	+	312	15674313	rpoA	SPy_0080	-	DNA-directed RNA polymerase subunit alpha
64	 40.57	0	78077..78463	+	128	15675947	rplQ	SPy_0080a	-	50S ribosomal protein L17
65	 42.47	+1	85708..85893	+	61	15674314	-	SPy_0084	-	hypothetical protein
66	 34.01	-1	87214..87657	+	147	15674315	adcR	SPy_0092	-	putative repressor protein
67	 40.97	0	87661..88380	+	239	15674316	adcC	SPy_0093	-	ABC transporter ATP-binding protein
68	 38.48	0	88373..89188	+	271	15674317	adcB	SPy_0094	-	putative ABC transporter (permease)
69	 40.62	0	89228..89611	-	127	15674318	-	SPy_0095	-	putative histidine triad (HIT) protein
70	 41.45	0	89662..90918	-	418	15674319	tyrS	SPy_0096	-	tyrosyl-tRNA synthetase
71	 40.25	0	91010..93322	+	770	15674320	pbp1b	SPy_0097	-	putative penicillin-binding protein 1b
72	 43.12	+1	93586..97152	+	1188	15674321	rpoB	SPy_0098	-	DNA-directed RNA polymerase subunit beta
73	 43.74	+1	97243..100884	+	1213	15674322	rpoC	SPy_0099	-	DNA-directed RNA polymerase subunit beta'
74	 34.70	-1	101036..101401	+	121	15674323	-	SPy_0100	-	putative DNA binding protein
75	 37.38	0	101494..102432	+	312	15674324	comYA	SPy_0101	-	putative ABC transporter subunit ComYA
76	 35.69	0	102554..103402	+	282	15674325	comYB	SPy_0102	-	putative competence protein, ABC transporter subunit
77	 33.94	-1	103404..103730	+	108	15674326	comYC	SPy_0103	-	putative competence protein
78	 34.27	-1	103705..104133	+	142	15674327	-	SPy_0104	-	putative competence protein
79	 38.40	0	104138..104374	+	78	15674328	-	SPy_0105	-	hypothetical protein
80	 35.17	0	104367..104801	+	144	15674329	comYD	SPy_0106	-	putative competence protein
81	 35.47	0	104785..105111	+	108	15674330	-	SPy_0107	-	hypothetical protein
82	 38.36	0	105209..106162	+	317	15674331	-	SPy_0108	-	hypothetical protein
83	 38.93	0	106221..107417	+	398	15674332	ackA	SPy_0109	-	acetate kinase
84	 35.60	0	107604..107912	+	102	15674333	-	SPy_0110	-	hypothetical protein
85	 43.84	+1	107995..108765	-	256	15674334	proC	SPy_0112	-	pyrroline-5-carboxylate reductase
86	 45.22	+1	108813..109880	-	355	15674335	pepA	SPy_0115	-	putative glutamyl-aminopeptidase
87	 38.18	0	109990..110154	-	54	15674336	-	SPy_0116	-	hypothetical protein
88	 36.84	0	110345..110629	+	94	15674337	-	SPy_0117	-	hypothetical protein
89	 40.03	0	112394..113035	-	213	15674338	-	SPy_0121	-	putative deoxyguanosine kinase/deoxyadenosine kinase(I) subunit
90	 45.50	+1	113055..114032	-	325	15674339	-	SPy_0122	-	tRNA-dihydrouridine synthase
91	 42.04	0	114019..114891	-	290	15674340	hslO	SPy_0123	-	Hsp33-like chaperonin
92	 34.07	-1	115038..116531	-	497	15674341	rofA	SPy_0124	-	regulatory protein
93	 32.83	-1	119222..119617	+	131	15674342	-	SPy_0127	-	putative signal peptidase I
94	 35.00	0	119650..120672	+	340	15674343	-	SPy_0128	-	hypothetical protein
95	 30.67	-2	120682..121395	+	237	15674344	-	SPy_0129	-	hypothetical protein
96	 31.79	-1	121417..122064	+	215	15674345	-	SPy_0130	-	hypothetical protein
97	 42.35	+1	122251..123603	-	450	15674346	-	SPy_0131	-	hypothetical protein
98	 40.74	0	123814..124164	-	116	15674347	-	SPy_0133	-	hypothetical protein
99	 39.55	0	124468..125223	+	251	15674348	-	SPy_0135	-	sortase
100	 33.93	-1	125417..126082	-	221	15674349	-	SPy_0136	-	hypothetical protein
38.64	MEAN

3.66	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.