IslandPath Analysis: Roseobacter denitrificans OCh 114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.98   STD DEV: 3.48
Roseobacter denitrificans OCh 114, complete genome - 1..4133097
3946 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.18	0	1723..2871	+	382	110677422	-	RD1_0003	-	aminomethyltransferase, putative
2	 57.31	0	2948..3556	+	202	110677423	-	RD1_0004	-	hypothetical protein
3	 59.57	0	3553..4539	+	328	110677424	vanB	RD1_0005	-	vanillate O-demethylase oxidoreductase, putative
4	 58.05	0	4551..5618	+	355	110677425	-	RD1_0006	-	hypothetical protein
5	 55.71	0	5659..6306	-	215	110677426	-	RD1_0007	-	DNA-binding protein
6	 59.27	0	6341..7435	+	364	110677427	araC	RD1_0008	-	AraC family transcriptional regulator
7	 64.71	+1	7540..8100	-	186	110677428	soxG	RD1_0009	-	sarcosine oxidase, gamma subunit
8	 62.57	+1	8093..11044	-	983	110677429	soxA	RD1_0010	-	sarcosine oxidase, alpha subunit
9	 60.42	0	11041..11328	-	95	110677430	soxD	RD1_0011	-	sarcosine oxidase, delta subunit
10	 60.19	0	11341..12591	-	416	110677431	soxB	RD1_0012	-	sarcosine oxidase, beta subunit
11	 57.81	0	12850..13797	+	315	110677432	opuAC	RD1_0013	-	glycine betaine transporter, substrate-binding protein
12	 58.74	0	13879..14913	+	344	110677433	opuAA	RD1_0014	-	glycine betaine transporter, ATP-binding protein
13	 59.65	0	14913..16892	+	659	110677434	opuAB	RD1_0015	-	glycine betaine transporter, permease protein
14	 61.73	0	16992..17639	-	215	110677435	rluA	RD1_0016	-	ribosomal large subunit pseudouridine synthase A
15	 59.44	0	17670..20117	-	815	110677436	-	RD1_0017	-	FAD dependent oxidoreductase, putative
16	 62.40	0	20147..21037	-	296	110677437	-	RD1_0018	-	homocysteine S-methyltransferase, putative
17	 60.51	0	21034..23484	-	816	110677438	-	RD1_0019	-	dimethylglycine dehydrogenase, putative
18	 55.76	0	23486..23650	-	54	110677439	-	RD1_0020	-	hypothetical protein
19	 60.10	0	23619..24242	-	207	110677440	-	RD1_0021	-	homoserine/lactone efflux protein
20	 62.65	+1	24239..24811	-	190	110677441	-	RD1_0022	-	DNA-binding protein
21	 48.15	-2	24803..24910	+	35	110677442	-	RD1_0023	-	hypothetical protein
22	 58.33	0	24931..25386	-	151	110677443	-	RD1_0024	-	hypothetical protein
23	 60.87	0	25435..26607	-	390	110677444	-	RD1_0025	-	thiolase domain-containing protein
24	 52.54	-1	26690..27043	+	117	110677445	-	RD1_0026	-	anti-anti-sigma factor, putative
25	 53.91	-1	27055..27501	+	148	110677446	rsbW	RD1_0027	-	serine-protein kinase, putative
26	 59.57	0	27764..29341	+	525	110677447	ggtA	RD1_0028	-	gamma-glutamyltranspeptidase, putative
27	 52.29	-1	29350..29676	-	108	110677448	-	RD1_0029	-	hypothetical protein
28	 58.39	0	29762..30643	+	293	110677449	-	RD1_0030	-	auxin efflux carrier family protein
29	 57.95	0	30714..31298	+	194	110677450	-	RD1_0031	-	putative lipoprotein
30	 60.07	0	31304..31864	-	186	110677451	lolA	RD1_0032	-	outer membrane lipoprotein carrier protein, putative
31	 60.70	0	32002..34818	-	938	110677452	ftsK	RD1_0033	-	cell division protein FtsK
32	 59.97	0	34824..36002	-	392	110677453	-	RD1_0034	-	aminotransferase, putative
33	 61.40	0	36111..37439	-	442	110677454	-	RD1_0035	-	amidase, putative
34	 61.52	0	37491..38753	+	420	110677455	ubiH	RD1_0036	-	2-octaprenyl-6-methoxyphenol hydroxylase
35	 56.45	0	38853..39038	-	61	110677456	-	RD1_0037	-	hypothetical protein
36	 57.67	0	39035..39679	-	214	110677457	lonD	RD1_0038	-	ATP-dependent protease La
37	 61.44	0	39707..40624	-	305	110677458	trx	RD1_0039	-	thioredoxin, putative
38	 58.81	0	40679..41467	-	262	110677459	xth	RD1_0041	-	exodeoxyribonuclease III, putative
39	 53.57	-1	41728..42414	-	228	110677460	mtrA	RD1_0042	-	DNA-binding response regulator, putative
40	 63.18	+1	42577..43665	+	362	110677461	ribA	RD1_0043	-	GTP cyclohydrolase II
41	 60.40	0	43662..44156	+	164	110677462	-	RD1_0044	-	hypothetical protein
42	 61.04	0	44164..44820	-	218	110677463	-	RD1_0046	-	hypothetical protein
43	 56.70	0	44919..45881	-	320	110677464	-	RD1_0047	-	outer membrane porin, putative
44	 61.59	0	46129..46620	+	163	110677465	-	RD1_0048	-	hypothetical protein
45	 59.36	0	46734..49280	+	848	110677466	leuS	RD1_0049	-	leucyl-tRNA synthetase
46	 63.75	+1	49267..49746	+	159	110677467	-	RD1_0050	-	putative lipoprotein
47	 64.27	+1	49743..50744	+	333	110677468	-	RD1_0052	-	hypothetical protein
48	 61.20	0	50763..51347	+	194	110677469	-	RD1_0053	-	glutathione S-transferase family protein
49	 65.99	+2	51326..52510	-	394	110677470	-	RD1_0054	-	hypothetical protein
50	 59.70	0	52507..53841	-	444	110677471	-	RD1_0055	-	mechanosensitive ion channel family protein, putative
51	 66.57	+2	53945..55948	-	667	110677472	-	RD1_0056	-	hydantoinase/oxoprolinase, putative
52	 63.03	+1	56013..57056	-	347	110677473	-	RD1_0057	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
53	 56.01	0	57069..57734	-	221	110677474	-	RD1_0058	-	glutathione S-transferase domain-containing protein
54	 63.06	+1	57790..58455	-	221	110677475	mtgA	RD1_0059	-	monofunctional biosynthetic peptidoglycan transglycosylase
55	 60.97	0	58565..63094	-	1509	110677476	gltB	RD1_0060	-	glutamate synthase, large subunit
56	 64.14	+1	63091..63525	-	144	110677477	-	RD1_0061	-	hypothetical protein
57	 62.53	+1	63522..63956	-	144	110677478	-	RD1_0062	-	hypothetical protein
58	 63.11	+1	64087..65520	-	477	110677479	gltD	RD1_0063	-	putative oxidoreductase
59	 60.70	0	65746..66549	+	267	110677480	uppP	RD1_0064	-	undecaprenyl-diphosphatase, putative
60	 56.71	0	66546..67529	-	327	110677481	-	RD1_0065	-	NADH-ubiquinone oxidoreductase, putative
61	 57.15	0	68288..69538	-	416	110677482	-	RD1_0067	-	sulfatase, putative
62	 58.56	0	69950..70813	-	287	110677483	-	RD1_0068	-	hypothetical protein
63	 57.87	0	70868..72958	-	696	110677484	-	RD1_0069	-	mechanosensitive ion channel protein, putative
64	 54.39	-1	73014..73127	+	37	110677485	-	RD1_0070	-	hypothetical protein
65	 59.69	0	73785..74429	-	214	110677486	-	RD1_0071	-	hypothetical protein
66	 60.63	0	74433..75839	-	468	110677487	-	RD1_0072	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
67	 59.79	0	75850..76620	-	256	110677488	-	RD1_0073	-	hypothetical protein
68	 59.06	0	76746..78467	-	573	110677489	dld	RD1_0074	-	D-lactate dehydrogenase
69	 57.43	0	78658..79296	+	212	110677490	-	RD1_0075	-	paraquat-inducible protein A
70	 53.33	-1	79254..79913	+	219	110677491	-	RD1_0076	-	paraquat-inducible protein A
71	 62.01	0	79906..81987	+	693	110677492	pqiB	RD1_0077	-	paraquat-inducible protein B, putative
72	 62.21	0	81988..82548	+	186	110677493	-	RD1_0078	-	putative lipoprotein
73	 59.49	0	82648..83775	-	375	110677494	-	RD1_0079	-	aminotransferase, putative
74	 59.36	0	83827..84579	+	250	110677495	-	RD1_0080	-	hypothetical protein
75	 58.33	0	84576..84767	-	63	110677496	-	RD1_0081	-	hypothetical protein
76	 52.20	-1	84780..84938	-	52	110677497	-	RD1_0082	-	hypothetical protein
77	 58.00	0	84933..86558	+	541	110677498	-	RD1_0083	-	glutamate synthase, putative
78	 57.68	0	86744..88468	-	574	110677499	-	RD1_0084	-	sensor histidine kinase, putative
79	 58.06	0	88470..89027	-	185	110677500	-	RD1_0085	-	RNA polymerase sigma factor
80	 56.55	0	89024..89191	-	55	110677501	-	RD1_0086	-	hypothetical protein
81	 56.79	0	89289..90098	+	269	110677502	tcrX	RD1_0087	-	two-component response regulator
82	 60.15	0	90109..91029	-	306	110677503	-	RD1_0088	-	ribonuclease BN, putative
83	 62.54	+1	91266..92525	+	419	110677504	-	RD1_0089	-	aminotransferase, putative
84	 59.84	0	92563..93852	+	429	110677505	dapE	RD1_0090	-	succinyl-diaminopimelate desuccinylase
85	 59.88	0	93937..94791	-	284	110677506	panC	RD1_0091	-	pantoate--beta-alanine ligase
86	 59.88	0	94788..95627	-	279	110677507	panB	RD1_0093	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
87	 56.56	0	95873..96634	+	253	110677508	-	RD1_0094	-	hypothetical protein
88	 56.94	0	96769..97056	+	95	110677509	-	RD1_0095	-	hypothetical protein
89	 63.75	+1	97134..98264	-	376	110677510	-	RD1_0096	-	acetoin utilization protein, putative
90	 58.48	0	98445..98945	+	166	110677511	-	RD1_0097	-	acetyltransferase, GNAT family protein, putative
91	 59.17	0	98961..99707	+	248	110677512	linX	RD1_0098	-	3-ketoacyl-(acyl-carrier-protein) reductase
92	 58.40	0	99704..100054	+	116	110677513	-	RD1_0099	-	hypothetical protein
93	 65.56	+1	100056..101048	+	330	110677514	-	RD1_0100	-	T4 family peptidase putative
94	 62.69	+1	101045..102982	-	645	110677515	dxs	RD1_0101	-	1-deoxy-D-xylulose-5-phosphate synthase
95	 56.45	0	103204..104319	-	371	110677516	pufC	RD1_0102	-	photosynthetic reaction center cytochrome c subunit
96	 57.93	0	104322..105317	-	331	110677517	pufM	RD1_0103	-	photosynthetic reaction center subunit M
97	 58.69	0	105319..106170	-	283	110677518	pufL	RD1_0104	-	photosynthetic reaction center subunit L
98	 59.09	0	106185..106316	+	43	110677519	-	RD1_0105	-	hypothetical protein
99	 59.12	0	106396..106554	-	52	110677520	pufA	RD1_0106	-	light-harvesting protein B-875, alpha chain
100	 52.29	-1	106567..106719	-	50	110677521	pufB	RD1_0107	-	light-harvesting protein B-875, beta chain
58.98	MEAN

3.48	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.