IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.21   STD DEV: 3.79
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome II, complete sequence - 1..277995
266 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.97	0	74..826	+	250	189912849	-	LBF_4000	-	ParA-like protein
2	 42.09	0	810..1631	+	273	189912850	-	LBF_4001	-	ParB-like protein
3	 46.54	+1	1973..2896	+	307	189912851	-	LBF_4002	-	hypothetical protein
4	 42.41	0	2947..5457	+	836	189912852	-	LBF_4003	-	hypothetical protein
5	 38.41	0	5443..6270	-	275	189912853	-	LBF_4004	-	hypothetical protein
6	 31.96	-1	6267..7430	-	387	189912854	-	LBF_4005	-	hypothetical protein
7	 36.67	0	7522..8331	+	269	189912855	-	LBF_4006	-	hypothetical protein
8	 35.87	0	8315..10639	-	774	189912856	-	LBF_4007	-	Sensor histidine kinase
9	 36.12	0	10697..12529	-	610	189912857	htpG	LBF_4008	-	HSP90 molecular chaperone
10	 33.21	-1	12533..14104	-	523	189912858	batD	LBF_4009	-	BatD
11	 34.73	-1	14088..15731	-	547	189912859	batBC	LBF_4010	-	BatBC
12	 36.90	0	15731..16684	-	317	189912860	batA	LBF_4011	-	BatA
13	 32.14	-1	16686..17525	-	279	189912861	-	LBF_4012	-	hypothetical protein
14	 33.09	-1	17518..18336	-	272	189912862	-	LBF_4013	-	hypothetical protein
15	 36.49	0	18338..19318	-	326	189912863	-	LBF_4014	-	MoxR-like ATPase
16	 36.52	0	19309..20628	-	439	189912864	-	LBF_4015	-	Conserved hypothetical lipoprotein
17	 37.20	0	20625..21167	-	180	189912865	-	LBF_4016	-	hypothetical protein
18	 38.43	0	21167..22030	-	287	189912866	-	LBF_4017	-	Hydrolase or acetyltransferase
19	 34.27	-1	22117..22545	+	142	189912867	-	LBF_4018	-	hypothetical protein
20	 36.40	0	22542..22802	+	86	189912868	-	LBF_4019	-	Hypothetical lipoprotein
21	 36.64	0	22788..24059	-	423	189912869	ndh	LBF_4020	-	NADH dehydrogenase
22	 33.33	-1	24062..24535	-	157	189912870	wzb	LBF_4021	-	Protein-tyrosine-phosphatase
23	 28.30	-2	24536..25210	-	224	189912871	-	LBF_4022	-	Metal-dependent hydrolase
24	 35.46	0	25197..26276	-	359	189912872	-	LBF_4023	-	hypothetical protein
25	 34.95	-1	26466..27392	+	308	189912873	-	LBF_4024	-	ParA-like protein
26	 35.72	0	27376..28086	+	236	189912874	-	LBF_4025	-	ParB-like protein
27	 34.56	-1	28094..28744	+	216	189912875	-	LBF_4026	-	hypothetical protein
28	 33.17	-1	28741..29343	+	200	189912876	-	LBF_4027	-	Flavoprotein
29	 29.90	-2	29294..30370	-	358	189912877	-	LBF_4028	-	hypothetical protein
30	 35.71	0	30475..30894	+	139	189912878	-	LBF_4029	-	Cyclic nucleotide-binding protein
31	 32.14	-1	30905..31156	-	83	189912879	-	LBF_4030	-	hypothetical protein
32	 36.93	0	31159..32661	-	500	189912880	-	LBF_4031	-	Signal transduction protein
33	 36.55	0	32749..33276	+	175	189912881	-	LBF_4032	-	hypothetical protein
34	 34.94	-1	33173..33733	-	186	189912882	-	LBF_4033	-	hypothetical protein
35	 39.28	0	33734..35011	-	425	189912883	-	LBF_4034	-	Sugar kinase and antagonist of anti-sigma factor
36	 39.22	0	35189..35494	+	101	189912884	-	LBF_4035	-	DNA-binding protein, IHF-related
37	 33.77	-1	35536..35988	+	150	189912885	-	LBF_4036	-	hypothetical protein
38	 38.28	0	36074..37690	+	538	189912886	-	LBF_4037	-	Alkylglycerone-phosphate synthase
39	 37.69	0	37690..38331	+	213	189912887	-	LBF_4038	-	Transcriptional regulator, AcrR-family
40	 38.06	0	38328..39257	+	309	189912888	-	LBF_4039	-	Sphingosine kinase related protein
41	 38.76	0	39262..40902	+	546	189912889	glpA-2	LBF_4040	-	Glycerol-3-phosphate dehydrogenase
42	 37.12	0	40903..41325	+	140	189912890	-	LBF_4041	-	Thioesterase
43	 39.74	0	41351..42349	-	332	189912891	-	LBF_4042	-	Protein kinase
44	 43.29	+1	42451..44469	-	672	189912892	meaA	LBF_4043	-	Methylmalonyl-CoA mutase
45	 37.24	0	44571..45902	+	443	189912893	-	LBF_4044	-	hypothetical protein
46	 44.18	+1	45922..46557	-	211	189912894	-	LBF_4045	-	Transglycosylase
47	 39.79	0	46612..46998	-	128	189912895	-	LBF_4046	-	Receiver protein of a two-component response regulator
48	 42.86	0	47069..48475	-	468	189912896	aspA	LBF_4047	-	Aspartate ammonia-lyase
49	 36.77	0	48517..48894	+	125	189912897	-	LBF_4048	-	hypothetical protein
50	 37.89	0	48932..49612	+	226	189912898	-	LBF_4049	-	hypothetical protein
51	 40.16	0	49704..50084	+	126	189912899	-	LBF_4050	-	Hypothetical lipoprotein
52	 40.18	0	50183..50635	+	150	189912900	-	LBF_4051	-	Hypothetical lipoprotein
53	 36.38	0	50639..51163	+	174	189912901	-	LBF_4052	-	RNA polymerase sigma subunit
54	 36.36	0	51144..51407	+	87	189912902	-	LBF_4053	-	hypothetical protein
55	 38.30	0	51498..51839	+	113	189912903	-	LBF_4054	-	hypothetical protein
56	 40.26	0	51857..52549	-	230	189912904	-	LBF_4055	-	hypothetical protein
57	 39.81	0	52524..52739	-	71	189912905	-	LBF_4056	-	Cytochrome oxidase maturation protein
58	 39.95	0	52721..55183	-	820	189912906	atzN	LBF_4057	-	Cation transport ATPase
59	 37.01	0	55180..55668	-	162	189912907	-	LBF_4058	-	hypothetical protein
60	 40.45	0	55670..56989	-	439	189912908	napH	LBF_4059	-	Polyferredoxin
61	 44.07	+1	56992..57522	-	176	189912909	cccA	LBF_4060	-	Cytochrome C
62	 38.67	0	57528..57677	-	49	189912910	-	LBF_4061	-	Cytochrome oxidase maturation protein
63	 43.10	+1	57682..58377	-	231	189912911	ccoO	LBF_4062	-	Cytochrome C oxidase, subunit II
64	 41.72	0	58377..59807	-	476	189912912	ccoN	LBF_4063	-	Cytochrome C oxidase, subunit I
65	 40.97	0	59996..60964	-	322	189912913	-	LBF_4064	-	hypothetical protein
66	 45.81	+1	61178..62620	-	480	189912914	-	LBF_4065	-	NADPH-dependent glutamate synthase beta chain - related oxidoreductase
67	 45.06	+1	62613..67190	-	1525	189912915	gltB	LBF_4066	-	Glutamate synthase (NADH)
68	 39.77	0	67384..68595	-	403	189912916	-	LBF_4067	-	hypothetical protein
69	 40.78	0	68640..69593	+	317	189912917	-	LBF_4068	-	hypothetical protein
70	 30.00	-2	69911..70210	+	99	189912918	-	LBF_4069	-	hypothetical protein
71	 33.09	-1	70211..70615	+	134	189912919	-	LBF_4070	-	Transcription regulator
72	 39.93	0	70769..71314	-	181	189912920	aroK	LBF_4071	-	Shikimate kinase
73	 40.00	0	71336..72190	-	284	189912921	-	LBF_4072	-	Signal transduction protein
74	 39.48	0	72196..72699	-	167	189912922	-	LBF_4073	-	Chemotaxis protein
75	 39.71	0	72760..73983	+	407	189912923	traB	LBF_4074	-	Pheromone shutdown protein
76	 43.39	+1	74031..74408	+	125	189912924	-	LBF_4075	-	Hypothetical lipoprotein
77	 43.24	+1	74484..74927	+	147	189912925	-	LBF_4076	-	hypothetical protein
78	 37.25	0	74983..75876	-	297	189912926	-	LBF_4077	-	hypothetical protein
79	 44.54	+1	75989..76354	+	121	189912927	-	LBF_4078	-	hypothetical protein
80	 38.57	0	76356..77768	+	470	189912928	-	LBF_4079	-	Nucleotide glucose-1-phosphate uridylyl transferase
81	 39.77	0	77765..78028	+	87	189912929	-	LBF_4080	-	hypothetical protein
82	 40.01	0	78105..80516	-	803	189912930	-	LBF_4081	-	Cysteine protease
83	 43.15	+1	80518..81159	-	213	189912931	tonB	LBF_4082	-	TonB protein
84	 41.82	0	81171..81830	-	219	189912932	exbB	LBF_4083	-	TolQ-like transport protein
85	 37.43	0	81936..83816	+	626	189912933	-	LBF_4084	-	hypothetical protein
86	 43.95	+1	83829..87032	+	1067	189912934	-	LBF_4085	-	Efflux pump, AcrB family
87	 43.25	+1	87114..87476	+	120	189912935	-	LBF_4086	-	hypothetical protein
88	 35.74	0	87525..88769	+	414	189912936	-	LBF_4087	-	Signal transduction histidine kinase
89	 40.18	0	88766..89422	+	218	189912937	-	LBF_4088	-	Receiver component of a two-component response regulator
90	 45.88	+1	89749..90864	-	371	189912938	-	LBF_4090	-	Protein kinase
91	 47.03	+2	91002..93140	-	712	189912939	-	LBF_4091	-	Methylmalonyl-CoA mutase
92	 44.43	+1	93133..94953	-	606	189912940	sbm	LBF_4092	-	Methylmalonyl-COA mutase
93	 44.66	+1	94955..95263	-	102	189912941	-	LBF_4093	-	hypothetical protein
94	 39.91	0	95330..95998	+	222	189912942	-	LBF_4094	-	hypothetical protein
95	 37.91	0	96057..96821	+	254	189912943	-	LBF_4095	-	hypothetical protein
96	 40.99	0	96821..97303	+	160	189912944	-	LBF_4096	-	hypothetical protein
97	 44.69	+1	97293..98234	+	313	189912945	-	LBF_4097	-	Permease
98	 41.61	0	98281..99126	-	281	189912946	-	LBF_4098	-	RNA polymerase sigma subunit
99	 40.80	0	99126..99500	-	124	189912947	-	LBF_4099	-	hypothetical protein
100	 35.29	-1	99644..100051	-	135	189912948	-	LBF_4100	-	hypothetical protein
39.21	MEAN

3.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.