IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.09   STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.05	0	23..1408	+	461	114561189	dnaA	Sfri_0001	-	chromosomal replication initiation protein
2	 41.69	0	1428..2528	+	366	114561190	-	Sfri_0002	-	DNA polymerase III, beta subunit
3	 40.63	0	2617..3699	+	360	114561191	-	Sfri_0003	-	DNA replication and repair protein RecF
4	 42.72	0	3715..6132	+	805	114561192	-	Sfri_0004	-	DNA gyrase, B subunit
5	 39.60	0	6233..7285	+	350	114561193	-	Sfri_0005	-	metal dependent phosphohydrolase
6	 42.54	0	7422..9506	-	694	114561194	glyS	Sfri_0006	-	glycyl-tRNA synthetase subunit beta
7	 44.37	0	9516..10421	-	301	114561195	glyQ	Sfri_0007	-	glycyl-tRNA synthetase subunit alpha
8	 40.07	0	10534..11097	+	187	114561196	-	Sfri_0008	-	DNA-3-methyladenine glycosylase I
9	 42.32	0	11162..14344	-	1060	114561197	-	Sfri_0009	-	amidohydrolase
10	 43.02	0	14637..15080	-	147	114561198	-	Sfri_0010	-	hypothetical protein
11	 40.65	0	15084..15329	-	81	114561199	-	Sfri_0011	-	SirA family protein
12	 46.99	+1	15577..16740	-	387	114561200	fadA	Sfri_0012	-	3-ketoacyl-CoA thiolase
13	 44.49	0	16763..18913	-	716	114561201	fadB	Sfri_0013	-	multifunctional fatty acid oxidation complex subunit alpha
14	 42.95	0	19149..20468	+	439	114561202	-	Sfri_0014	-	proline dipeptidase
15	 42.28	0	20461..21075	+	204	114561203	-	Sfri_0015	-	hypothetical protein
16	 42.59	0	21149..22606	+	485	114561204	-	Sfri_0016	-	potassium uptake protein, TrkH family protein
17	 38.98	0	22606..23136	+	176	114561205	-	Sfri_0017	-	protoporphyrinogen oxidase
18	 41.18	0	23262..23567	-	101	114561206	-	Sfri_0018	-	transcriptional regulator, ArsR family protein
19	 41.03	0	23766..24311	+	181	114561207	-	Sfri_0019	-	protoporphyrinogen oxidase
20	 42.00	0	24403..25845	-	480	114561208	-	Sfri_0020	-	potassium uptake protein, TrkH family protein
21	 43.12	0	25852..27261	-	469	114561209	trkA	Sfri_0021	-	potassium transporter peripheral membrane component
22	 44.31	0	27278..28561	-	427	114561210	-	Sfri_0022	-	sun protein
23	 45.87	+1	28563..29519	-	318	114561211	-	Sfri_0023	-	methionyl-tRNA formyltransferase
24	 39.15	0	29528..30094	-	188	114561212	-	Sfri_0024	-	peptide deformylase
25	 39.21	0	30167..31273	+	368	114561213	-	Sfri_0025	-	peptidoglycan-binding LysM
26	 44.44	0	31357..32373	+	338	114561214	-	Sfri_0026	-	DNA protecting protein DprA
27	 36.50	-1	32376..32849	+	157	114561215	-	Sfri_0027	-	hypothetical protein
28	 43.62	0	32909..33472	+	187	114561216	-	Sfri_0028	-	DNA topoisomerase type IA Zn finger domain-containing protein
29	 43.39	0	33508..34074	+	188	114561217	-	Sfri_0029	-	SUA5/yciO/yrdC domain-containing protein
30	 45.12	0	34079..35011	+	310	114561218	-	Sfri_0030	-	coproporphyrinogen III oxidase
31	 43.91	0	35008..35442	-	144	114561219	-	Sfri_0031	-	globin
32	 44.18	0	35614..36996	+	460	114561220	-	Sfri_0032	-	amidohydrolase
33	 44.15	0	37008..38264	+	418	114561221	-	Sfri_0033	-	amidohydrolase
34	 41.73	0	38321..39154	+	277	114561222	-	Sfri_0034	-	shikimate 5-dehydrogenase
35	 38.76	-1	39154..39411	+	85	114561223	-	Sfri_0035	-	hypothetical protein
36	 37.91	-1	39408..40631	-	407	114561224	-	Sfri_0036	-	diguanylate cyclase
37	 42.12	0	40917..41462	-	181	114561225	-	Sfri_0037	-	carbonic anhydrase
38	 38.77	-1	47851..50334	+	827	114561226	-	Sfri_0038	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
39	 39.38	0	50300..51274	-	324	114561227	-	Sfri_0039	-	alpha/beta hydrolase fold
40	 42.07	0	51337..53145	-	602	114561228	-	Sfri_0040	-	hypothetical protein
41	 42.84	0	53362..54360	+	332	114561229	-	Sfri_0041	-	adenosine deaminase
42	 38.40	-1	54434..55774	-	446	114561230	-	Sfri_0042	-	coproporphyrinogen III oxidase
43	 42.93	0	56007..56756	-	249	114561231	-	Sfri_0043	-	hypothetical protein
44	 44.69	0	56812..58440	-	542	114561232	-	Sfri_0044	-	hypothetical protein
45	 41.70	0	58656..59312	+	218	114561233	-	Sfri_0045	-	multiple antibiotic resistance (MarC)-related proteins
46	 38.68	-1	59520..59837	+	105	114561234	-	Sfri_0046	-	hypothetical protein
47	 44.05	0	59837..62674	+	945	114561235	-	Sfri_0047	-	peptidase M6, immune inhibitor A
48	 44.23	0	62765..63379	-	204	114561236	-	Sfri_0048	-	chorismate lyase
49	 38.31	-1	63506..63907	+	133	114561237	-	Sfri_0049	-	flagellar basal body-associated protein FliL-like protein
50	 43.03	0	63907..64989	+	360	114561238	-	Sfri_0050	-	putative SAM-dependent methyltransferase
51	 42.81	0	64986..65840	-	284	114561239	-	Sfri_0051	-	formate dehydrogenase, subunit FdhD
52	 48.72	+2	66187..66654	+	155	114561240	-	Sfri_0052	-	hypothetical protein
53	 47.34	+1	66651..67307	+	218	114561241	-	Sfri_0053	-	hypothetical protein
54	 43.93	0	67463..69142	+	559	114561242	-	Sfri_0054	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
55	 41.14	0	69153..69818	+	221	114561243	-	Sfri_0055	-	cytoplasmic chaperone TorD family protein
56	 48.99	+2	69869..70066	+	65	114561244	-	Sfri_0056	-	twin-arginine translocation pathway signal
57	 45.33	+1	70083..72932	+	949	114561245	-	Sfri_0057	-	twin-arginine translocation pathway signal
58	 46.40	+1	72958..73554	+	198	114561246	-	Sfri_0058	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
59	 43.66	0	73603..74619	+	338	114561247	-	Sfri_0059	-	formate dehydrogenase, gamma subunit
60	 39.49	0	74879..75268	+	129	114561248	-	Sfri_0060	-	rare lipoprotein A
61	 40.74	0	75399..76208	+	269	114561249	-	Sfri_0061	-	hypothetical protein
62	 40.10	0	76457..77254	+	265	114561250	-	Sfri_0062	-	hypothetical protein
63	 46.21	+1	77363..78286	+	307	114561251	-	Sfri_0063	-	hypothetical protein
64	 37.26	-1	78381..79373	+	330	114561252	-	Sfri_0064	-	alpha/beta hydrolase fold
65	 43.65	0	79500..80216	+	238	114561253	-	Sfri_0065	-	ZIP zinc transporter family protein
66	 38.76	-1	80276..80662	+	128	114561254	-	Sfri_0066	-	hypothetical protein
67	 40.09	0	80778..81221	+	147	114561255	-	Sfri_0067	-	acetyltransferase, GNAT family protein
68	 47.36	+1	81492..82361	+	289	114561256	-	Sfri_0068	-	hypothetical protein
69	 43.04	0	82458..83498	-	346	114561257	-	Sfri_0069	-	hypothetical protein
70	 38.94	-1	83717..84376	+	219	114561258	-	Sfri_0070	-	hypothetical protein
71	 37.54	-1	84393..86246	-	617	114561259	-	Sfri_0071	-	TPR repeat-containing protein
72	 39.34	0	86474..86806	+	110	114561260	-	Sfri_0072	-	small multidrug resistance protein
73	 45.37	+1	87004..88191	-	395	114561261	-	Sfri_0073	-	iron-containing alcohol dehydrogenase
74	 41.15	0	88420..89289	+	289	114561262	-	Sfri_0074	-	transcriptional regulator, AraC family protein
75	 41.21	0	89357..89686	+	109	114561263	-	Sfri_0075	-	hypothetical protein
76	 41.18	0	90025..91362	+	445	114561264	-	Sfri_0076	-	coproporphyrinogen III oxidase
77	 47.04	+1	91451..92296	+	281	114561265	-	Sfri_0077	-	ribokinase-like domain-containing protein
78	 43.87	0	92590..93282	+	230	114561266	-	Sfri_0078	-	MOSC domain-containing protein
79	 38.06	-1	93339..93698	+	119	114561267	-	Sfri_0079	-	hypothetical protein
80	 42.60	0	93795..95705	-	636	114561268	-	Sfri_0080	-	methyl-accepting chemotaxis sensory transducer
81	 42.91	0	95924..97573	-	549	114561269	-	Sfri_0081	-	electron-transferring-flavoprotein dehydrogenase
82	 41.52	0	97897..98910	+	337	114561270	moaA	Sfri_0082	-	molybdenum cofactor biosynthesis protein A
83	 45.91	+1	98997..99473	+	158	114561271	moaC	Sfri_0083	-	molybdenum cofactor biosynthesis protein C
84	 46.59	+1	99538..99786	+	82	114561272	-	Sfri_0084	-	molybdopterin converting factor, subunit 1
85	 43.31	0	99788..100258	+	156	114561273	-	Sfri_0085	-	molybdopterin biosynthesis MoaE
86	 44.60	0	100290..101141	+	283	114561274	-	Sfri_0086	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
87	 44.64	0	101141..101821	+	226	114561275	-	Sfri_0087	-	molybdate ABC transporter, inner membrane subunit
88	 44.83	0	101802..102923	+	373	114561276	-	Sfri_0088	-	ABC transporter related
89	 38.89	-1	103294..103815	+	173	114561277	-	Sfri_0089	-	hypothetical protein
90	 40.50	0	103823..104506	+	227	114561278	-	Sfri_0090	-	two component transcriptional regulator, winged helix family protein
91	 42.83	0	104574..105815	+	413	114561279	-	Sfri_0091	-	periplasmic sensor signal transduction histidine kinase
92	 41.30	0	105856..106533	+	225	114561280	-	Sfri_0092	-	pseudouridine synthase Rlu family protein
93	 38.72	-1	106610..107890	-	426	114561281	-	Sfri_0093	-	diguanylate cyclase
94	 33.33	-2	107995..108162	+	55	114561282	-	Sfri_0094	-	hypothetical protein
95	 43.00	0	108277..108483	+	68	114561283	-	Sfri_0095	-	hypothetical protein
96	 42.67	0	108516..109286	-	256	114561284	-	Sfri_0096	-	molybdopterin biosynthesis protein MoeB
97	 43.22	0	109294..110547	-	417	114561285	-	Sfri_0097	-	molybdenum cofactor synthesis domain-containing protein
98	 38.58	-1	110654..110977	+	107	114561286	-	Sfri_0098	-	excinuclease ABC subunit C
99	 41.28	0	111080..111973	+	297	114561287	-	Sfri_0099	-	hypothetical protein
100	 43.23	0	112015..113874	-	619	114561288	-	Sfri_0100	-	peptidase M14, carboxypeptidase A
42.09	MEAN

3.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.