IslandPath Analysis: Chlamydia trachomatis L2b/UCH-1/proctitis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.55   STD DEV: 2.30
Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome - 1..1038869
874 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.71	0	1..1017	+	338	166154849	hemB	CTLon_0001	-	delta-aminolevulinic acid dehydratase
2	 40.49	0	1043..2440	-	465	166154850	nqrA	CTLon_0002	-	Na(+)-translocating NADH-quinone reductase subunit A
3	 35.40	-2	2462..2896	-	144	166154851	-	CTLon_0003	-	hypothetical protein
4	 38.64	-1	3010..5157	+	715	166154852	greA	CTLon_0004	-	transcript cleavage factor/unknown domain fusion protein
5	 40.73	0	5345..6547	+	400	166154853	aspC	CTLon_0005	-	aromatic amino acid aminotransferase
6	 41.64	0	6522..7532	+	336	166154854	-	CTLon_0006	-	exported protein
7	 39.79	0	7548..10628	-	1026	166154855	recB	CTLon_0007	-	exodeoxyribonuclease V beta chain
8	 39.49	0	10630..13650	-	1006	166154856	recC	CTLon_0008	-	exodeoxyribonuclease V gamma chain
9	 39.40	0	13663..15342	+	559	166154857	-	CTLon_0009	-	putative membrane efflux protein
10	 40.07	0	15362..16177	-	271	166154858	-	CTLon_0010	-	hypothetical protein
11	 41.49	0	17070..19643	+	857	166154859	topA	CTLon_0011	-	DNA topoisomerase I/SWI domain fusion protein
12	 45.67	+1	19673..20677	-	334	166154860	-	CTLon_0012	-	putative oxidoreductase
13	 37.71	-1	20656..20952	-	98	166154861	-	CTLon_0013	-	integral membrane protein
14	 43.77	0	21057..22436	+	459	166154862	-	CTLon_0014	-	hypothetical protein
15	 46.29	+2	22436..23014	+	192	166154863	-	CTLon_0015	-	hypothetical protein
16	 41.65	0	23005..24279	+	424	166154864	-	CTLon_0016	-	hypothetical protein
17	 43.95	+1	24282..24818	+	178	166154865	-	CTLon_0017	-	hypothetical protein
18	 44.66	+1	25078..26136	+	352	166154866	recA	CTLon_0018	-	recombinase A
19	 40.45	0	26422..28248	+	608	166154867	-	CTLon_0019	-	putative exported lipoprotein
20	 41.58	0	28245..29735	+	496	166154868	recD	CTLon_0020	-	exodeoxyribonuclease V alpha chain
21	 42.22	0	29801..29980	+	59	166154869	-	CTLon_0021	-	hypothetical protein
22	 40.97	0	30081..30800	-	239	166154870	-	CTLon_0022	-	ABC transporter ATP-binding protein
23	 40.08	0	30809..31297	-	162	166154871	-	CTLon_0023	-	hypothetical protein
24	 42.96	0	31294..32103	-	269	166154872	kdsA	CTLon_0024	-	2-dehydro-3-deoxyphosphooctonate aldolase
25	 43.20	0	32589..32882	+	97	166154873	-	CTLon_0025	-	hypothetical protein
26	 39.94	0	32882..33199	+	105	166154874	-	CTLon_0026	-	hypothetical protein
27	 44.25	+1	33281..34288	+	335	166154875	sfhB	CTLon_0027	-	ribosomal large subunit pseudouridine synthase D
28	 38.40	-1	34388..34624	+	78	166154876	-	CTLon_0028	-	hypothetical protein
29	 42.91	0	34763..36235	-	490	166154877	gyrA2	CTLon_0029	-	DNA topoisomerase IV subunit A
30	 40.15	0	36250..38067	-	605	166154878	gyrB	CTLon_0030	-	DNA topoisomerase IV subunit B
31	 43.95	+1	38447..39454	+	335	166154879	hemA	CTLon_0031	-	glutamyl-tRNA reductase
32	 45.27	+1	40173..40574	+	133	166154880	sycE	CTLon_0032	-	Type III secretion system chaperone
33	 42.33	0	40578..43067	+	829	166154881	-	CTLon_0033	-	phosphopeptide binding protein ( to be a TTSS protein)
34	 41.27	0	43111..43362	+	83	166154882	-	CTLon_0034	-	hypothetical protein
35	 40.08	0	43389..43640	+	83	166154883	-	CTLon_0035	-	hypothetical protein
36	 39.56	0	43659..44108	+	149	166154884	-	CTLon_0036	-	hypothetical protein
37	 42.41	0	44128..44799	+	223	166154885	-	CTLon_0037	-	hypothetical protein
38	 45.00	+1	44801..46129	+	442	166154886	sctN	CTLon_0038	-	type III secretion system ATPase
39	 41.62	0	46152..46658	+	168	166154887	-	CTLon_0039	-	hypothetical protein
40	 42.49	0	46662..47513	+	283	166154888	-	CTLon_0040	-	hypothetical protein
41	 40.91	0	47523..48644	+	373	166154889	sctQ	CTLon_0041	-	type III secretion system protein
42	 42.70	0	48779..50251	+	490	166154890	pkn5	CTLon_0042	-	putative serine/threonine-protein kinase (TTSS effector protein)
43	 42.77	0	50248..53013	+	921	166154891	-	CTLon_0043	-	Type III secretion structural protein (outer membrane ring)
44	 41.18	0	53327..54397	-	356	166154892	aspC	CTLon_0044	-	ATP:guanido phosphotransferase
45	 43.10	0	54387..54908	-	173	166154893	-	CTLon_0045	-	hypothetical protein
46	 44.07	+1	55280..55819	-	179	166154894	rrf	CTLon_0046	-	ribosome recycling factor
47	 45.12	+1	55816..56553	-	245	166154895	pyrH	CTLon_0047	-	uridylate kinase
48	 42.29	0	56566..57414	-	282	166154896	tsf	CTLon_0048	-	elongation factor Ts
49	 42.05	0	57411..58259	-	282	166154897	rpsB	CTLon_0049	-	30S ribosomal protein S2
50	 43.80	0	58643..59827	-	394	166154898	ompA	CTLon_0050	-	major outer membrane protein
51	 42.58	0	60435..63677	+	1080	166154899	pbpB	CTLon_0051	-	penicillin-binding protein
52	 39.48	0	63741..64748	+	335	166154900	-	CTLon_0052	-	TPR repeat-containing protein
53	 42.56	0	65090..66541	+	483	166154901	-	CTLon_0053	-	cysteine desulfurase activator complex subunit SufB
54	 43.23	0	66544..67311	+	255	166154902	-	CTLon_0054	-	ABC transporter ATP-binding protein
55	 44.36	+1	67315..68502	+	395	166154903	-	CTLon_0055	-	hypothetical protein
56	 43.78	0	68495..69700	+	401	166154904	sufS	CTLon_0056	-	cysteine desulfurase
57	 41.37	0	69836..70681	+	281	166154905	parB	CTLon_0057	-	putative chromosome partitioning protein
58	 42.84	0	70673..71503	-	276	166154906	dppF	CTLon_0058	-	ABC transport protein, ATPase component
59	 41.20	0	71496..72461	-	321	166154907	dppD	CTLon_0059	-	ABC transport protein, ATPase component
60	 41.04	0	72622..73296	+	224	166154908	-	CTLon_0060	-	hypothetical protein
61	 44.34	+1	73299..74579	+	426	166154909	-	CTLon_0061	-	low-affinity inorganic phosphate transporter
62	 45.30	+1	74707..75918	+	403	166154910	pgk	CTLon_0062	-	phosphoglycerate kinase
63	 42.11	0	76178..77146	+	322	166154911	-	CTLon_0063	-	hypothetical protein
64	 44.53	+1	77197..78393	+	398	166154912	-	CTLon_0064	-	hypothetical protein
65	 41.48	0	78479..79657	+	392	166154913	-	CTLon_0065	-	hypothetical protein
66	 41.51	0	79654..80289	-	211	166154914	nth	CTLon_0066	-	endonuclease III
67	 41.95	0	80296..81630	-	444	166154915	trmE	CTLon_0067	-	tRNA modification GTPase TrmE
68	 42.05	0	81898..82803	+	301	166154916	psdD	CTLon_0068	-	phosphatidylserine decarboxylase
69	 44.65	+1	82869..84194	+	441	166154917	-	CTLon_0069	-	hypothetical protein
70	 43.40	0	84453..87362	+	969	166154918	secA	CTLon_0070	-	preprotein translocase subunit SecA
71	 40.34	0	87456..87983	-	175	166154919	-	CTLon_0071	-	hypothetical protein
72	 41.34	0	88060..89532	-	490	166154920	engA	CTLon_0072	-	GTP-binding protein EngA
73	 43.07	0	89648..90880	-	410	166154921	pcnB	CTLon_0073	-	polyA polymerase
74	 41.75	0	90895..92154	-	419	166154922	clpX	CTLon_0074	-	ATP-dependent protease ATP-binding subunit
75	 43.14	0	92164..92775	-	203	166154923	clpP	CTLon_0075	-	ATP-dependent Clp protease proteolytic subunit
76	 39.35	0	92942..94270	-	442	166154924	tig	CTLon_0076	-	trigger factor
77	 40.38	0	94629..98120	+	1163	166154925	-	CTLon_0077	-	putative helicase
78	 45.23	+1	98125..99225	+	366	166154926	mreB	CTLon_0078	-	cell shape determining protein
79	 46.06	+1	99222..101021	+	599	166154927	pckA	CTLon_0079	-	phosphoenolpyruvate carboxykinase
80	 39.11	-1	101133..103436	+	767	166154928	-	CTLon_0080	-	hypothetical protein
81	 41.35	0	103463..104635	+	390	166154929	-	CTLon_0081	-	hypothetical protein
82	 44.09	+1	104701..105723	-	340	166154930	ompB	CTLon_0082	-	outer membrane protein B
83	 46.57	+2	105857..106861	-	334	166154931	gpdA	CTLon_0083	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
84	 41.59	0	106858..108225	-	455	166154932	-	CTLon_0084	-	UDP-N-acetylglucosamine pyrophosphorylase
85	 36.07	-2	108237..108602	-	121	166154933	-	CTLon_0085	-	hypothetical protein
86	 44.60	+1	108595..109899	-	434	166154934	fliI	CTLon_0086	-	type III secretion system ATPase
87	 40.57	0	109973..110497	-	174	166154935	-	CTLon_0087	-	hypothetical protein
88	 41.99	0	110502..111506	-	334	166154936	fliF	CTLon_0088	-	type III secretion system protein
89	 44.44	+1	111780..112562	-	260	166154937	-	CTLon_0089	-	hypothetical protein
90	 45.89	+1	112559..113713	-	384	166154938	-	CTLon_0090	-	cysteine desulfurase
91	 43.61	0	113668..114348	-	226	166154939	pgmA	CTLon_0091	-	phosphoglyceromutase
92	 45.18	+1	114643..115368	+	241	166154940	-	CTLon_0092	-	ribosomal large subunit pseudouridine synthase B
93	 42.10	0	115487..116011	+	174	166154941	-	CTLon_0093	-	hypothetical protein
94	 44.50	+1	116038..116592	+	184	166154942	birA	CTLon_0094	-	biotin--protein ligase
95	 42.28	0	116599..117738	-	379	166154943	-	CTLon_0095	-	cell cycle protein
96	 45.10	+1	117830..119809	-	659	166154944	-	CTLon_0096	-	cation transporting ATPase
97	 42.30	0	119833..120579	-	248	166154945	-	CTLon_0097	-	putative integral membrane protein
98	 42.89	0	120616..121902	-	428	166154946	serS	CTLon_0098	-	seryl-tRNA synthetase
99	 45.92	+1	121944..123071	+	375	166154947	ribD	CTLon_0099	-	riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
100	 45.41	+1	123181..124455	+	424	166154948	ribA	CTLon_0100	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
41.55	MEAN

2.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.