IslandPath Analysis: Mycobacterium smegmatis str. MC2 155



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.48   STD DEV: 3.10
Mycobacterium smegmatis str. MC2 155, complete genome - 1..6988209
6716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 69.51	0	499..1692	+	397	118468117	dnaN	MSMEG_0001	-	DNA polymerase III subunit beta
2	 66.00	0	1721..2614	+	297	118471954	-	MSMEG_0002	-	6-phosphogluconate dehydrogenase-like protein
3	 68.23	0	2624..3778	+	384	118467917	recF	MSMEG_0003	-	recombination protein F
4	 73.16	+1	3775..4359	+	194	118470893	-	MSMEG_0004	-	hypothetical protein
5	 62.77	-1	4591..6618	+	675	118470567	gyrB	MSMEG_0005	-	DNA gyrase subunit B
6	 65.64	0	6648..9176	+	842	118467811	gyrA	MSMEG_0006	-	DNA gyrase subunit A
7	 70.24	0	9229..10011	+	260	118470742	-	MSMEG_0007	-	hypothetical protein
8	 60.22	-2	10184..10276	+	30	118473279	-	MSMEG_0009	-	hypothetical protein
9	 67.67	0	10411..11211	+	266	118470556	-	MSMEG_0011	-	FAD-binding 9, siderophore-interacting
10	 68.12	0	11215..12246	+	343	118467909	-	MSMEG_0012	-	ferric enterobactin transport system permease protein FepD
11	 67.27	0	13310..14140	+	276	118471554	-	MSMEG_0015	-	ferric enterobactin transport ATP-binding protein FepC
12	 63.05	-1	14130..15098	-	322	118470693	-	MSMEG_0014	-	Formyl transferase
13	 64.79	0	15256..15522	+	88	118469728	-	MSMEG_0016	-	hypothetical protein
14	 68.40	0	15525..17252	+	575	118472346	-	MSMEG_0017	-	ABC transporter, permease/ATP-binding protein
15	 70.06	0	17249..19018	+	589	118472884	-	MSMEG_0018	-	ABC transporter, permease/ATP-binding protein
16	 69.96	0	19052..41623	+	7523	118470215	-	MSMEG_0019	-	amino acid adenylation
17	 64.14	-1	41689..42636	-	315	118469059	-	MSMEG_0020	-	periplasmic binding protein
18	 62.53	-1	42944..43354	+	136	118473676	panD	MSMEG_0021	-	aspartate 1-decarboxylase
19	 66.44	0	43366..44688	+	440	118471393	-	MSMEG_0022	-	L-ornithine 5-monooxygenase
20	 72.02	+1	44692..45102	-	136	118472943	-	MSMEG_0023	-	hypothetical protein
21	 66.10	0	45223..45750	+	175	118468422	-	MSMEG_0024	-	peptidyl-prolyl cis-trans isomerase B
22	 64.22	-1	45854..46261	-	135	118469885	-	MSMEG_0025	-	hypothetical protein
23	 60.00	-2	46417..46701	-	94	118471515	-	MSMEG_0026	-	putative septation inhibitor protein
24	 72.13	+1	46797..47546	+	249	118469202	-	MSMEG_0027	-	hypothetical protein
25	 70.07	0	47564..48238	+	224	118467576	-	MSMEG_0029	-	para-aminobenzoate synthase component II
26	 69.33	0	48216..50093	-	625	118471844	-	MSMEG_0028	-	serine-threonine protein kinase
27	 70.56	0	50090..51349	-	419	118472918	pknA	MSMEG_0030	-	serine/threonine protein kinase PknA
28	 69.38	0	51381..52856	-	491	118469030	-	MSMEG_0031	-	penicillin binding protein transpeptidase domain-containing protein
29	 66.45	0	52853..54268	-	471	118468873	-	MSMEG_0032	-	cell cycle protein, FtsW/RodA/SpoVE family protein
30	 71.99	+1	54265..55803	-	512	118470123	-	MSMEG_0033	-	protein phosphatase 2C
31	 65.81	0	55826..56293	-	155	118472708	-	MSMEG_0034	-	FHA domain-containing protein
32	 68.85	0	56429..57892	-	487	118471786	-	MSMEG_0035	-	FHA domain-containing protein
33	 62.96	-1	58033..58140	-	35	118467853	-	MSMEG_0036	-	hypothetical protein
34	 68.53	0	58655..59029	-	124	118469105	-	MSMEG_0039	-	small membrane hydrophobic protein
35	 65.69	0	59041..59346	-	101	118469688	-	MSMEG_0040	-	hypothetical protein
36	 71.91	+1	59348..59824	-	158	118468567	-	MSMEG_0041	-	hypothetical protein
37	 68.44	0	59900..60463	+	187	118467560	-	MSMEG_0042	-	TetR-family protein transcriptional regulator
38	 67.76	0	60479..61303	-	274	118473743	-	MSMEG_0043	-	extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
39	 70.66	+1	61470..63548	+	692	118470024	-	MSMEG_0044	-	hypothetical protein
40	 72.09	+1	63545..66013	+	822	118469427	-	MSMEG_0045	-	hypothetical protein
41	 69.34	0	66010..67167	+	385	118468267	-	MSMEG_0046	-	hypothetical protein
42	 68.70	0	67182..68117	-	311	118467476	-	MSMEG_0047	-	hypothetical protein
43	 65.08	0	68264..68767	+	167	118471734	-	MSMEG_0048	-	pyridoxamine 5'-phosphate oxidase family protein
44	 69.98	0	68769..69734	-	321	118468908	-	MSMEG_0049	-	pirin domain-containing protein
45	 66.67	0	69779..70045	+	88	118468746	-	MSMEG_0050	-	hypothetical protein
46	 70.07	0	70234..70527	-	97	118473042	-	MSMEG_0051	-	transcription factor WhiB family protein
47	 72.69	+1	70911..71690	+	259	118467671	-	MSMEG_0052	-	hypothetical protein
48	 62.62	-1	71738..72823	+	361	118472505	-	MSMEG_0054	-	ISMsm2, transposase
49	 70.48	0	72820..74208	-	462	118471679	-	MSMEG_0053	-	hypothetical protein
50	 68.38	0	74600..76177	+	525	118469229	-	MSMEG_0055	-	hypothetical protein
51	 68.55	0	76213..76530	+	105	118469912	-	MSMEG_0056	-	hypothetical protein
52	 67.49	0	76535..77383	+	282	118472873	-	MSMEG_0057	-	hypothetical protein
53	 64.77	0	77398..77925	+	175	118470703	-	MSMEG_0058	-	hypothetical protein
54	 66.67	0	77918..79642	+	574	118472323	-	MSMEG_0059	-	ATPase, AAA family protein
55	 67.57	0	79650..81089	+	479	118470512	-	MSMEG_0060	-	hypothetical protein
56	 66.44	0	81089..83317	+	742	118472312	-	MSMEG_0061	-	ftsk/SpoIIIE family protein
57	 66.50	0	83318..85099	+	593	118469179	-	MSMEG_0062	-	ftsk/SpoIIIE family protein
58	 68.71	0	85248..85541	+	97	118467647	-	MSMEG_0063	-	PE family protein
59	 69.98	0	85616..86911	+	431	118468579	-	MSMEG_0064	-	PPE family protein
60	 65.68	0	86997..87299	+	100	118473747	-	MSMEG_0065	-	hypothetical protein
61	 67.36	0	87331..87618	+	95	118473376	-	MSMEG_0066	-	early secretory antigenic target, 6 kDa
62	 68.84	0	87738..89162	+	474	118472342	-	MSMEG_0067	-	hypothetical protein
63	 68.17	0	89159..90691	+	510	118473897	-	MSMEG_0068	-	transmembrane protein
64	 61.11	-2	91173..91874	+	233	118468706	-	MSMEG_0069	-	translation initiation factor IF-2 protein
65	 59.52	-2	92737..93072	+	111	118468104	-	MSMEG_0070	-	hypothetical protein
66	 61.73	-1	93072..95339	+	755	118467650	-	MSMEG_0071	-	hypothetical protein
67	 66.53	0	96469..97935	+	488	118472235	-	MSMEG_0074	-	IS1549, transposase
68	 64.99	0	99229..99585	+	118	118471626	-	MSMEG_0075	-	hypothetical protein
69	 67.37	0	99798..101360	+	520	118474029	-	MSMEG_0076	-	antigen MTB48
70	 62.26	-1	101776..102093	-	105	118470100	-	MSMEG_0077	-	hypothetical protein
71	 61.98	-1	102127..102702	-	191	118473597	-	MSMEG_0078	-	hypothetical protein
72	 63.99	-1	102936..103682	-	248	118467832	-	MSMEG_0079	-	hypothetical protein
73	 62.15	-1	103713..104243	-	176	118469183	-	MSMEG_0080	-	hypothetical protein
74	 63.06	-1	104251..104583	-	110	118468461	-	MSMEG_0081	-	hypothetical protein
75	 67.46	0	104594..105988	-	464	118468438	-	MSMEG_0082	-	hypothetical protein
76	 69.33	0	105985..107334	-	449	118467898	-	MSMEG_0083	-	membrane-anchored mycosin mycp1
77	 67.05	0	107565..107822	-	85	118467582	-	MSMEG_0084	-	phosphocarrier protein HPr
78	 69.99	0	107834..109849	-	671	118468259	-	MSMEG_0085	-	PTS system, Fru family protein, IIABC components
79	 71.14	+1	109846..110829	-	327	118472636	-	MSMEG_0086	-	1-phosphofructokinase
80	 70.96	+1	110826..111593	-	255	118468789	-	MSMEG_0087	-	glucitol operon repressor
81	 73.64	+1	111735..113369	+	544	118473073	ptsI	MSMEG_0088	-	phosphoenolpyruvate-protein phosphotransferase
82	 68.21	0	113433..114407	+	324	118472785	-	MSMEG_0089	-	chromosome condensation protein
83	 70.86	+1	114447..116594	-	715	118471193	-	MSMEG_0090	-	hypothetical protein
84	 65.99	0	116600..117193	-	197	118471952	-	MSMEG_0091	-	putative transcriptional regulator
85	 59.91	-2	117306..117941	+	211	118469318	-	MSMEG_0092	-	transcriptional regulatory protein
86	 70.40	0	118003..118965	+	320	118468041	-	MSMEG_0093	-	methyltransferase
87	 69.02	0	118962..119897	+	311	118467600	-	MSMEG_0095	-	methyltransferase
88	 67.22	0	119878..120057	-	59	118472453	-	MSMEG_0094	-	hypothetical protein
89	 66.20	0	120261..121115	+	284	118470219	-	MSMEG_0096	-	peroxisomal hydratase-dehydrogenase-epimerase
90	 72.57	+1	121119..122084	+	321	118467805	-	MSMEG_0097	-	oxidoreductase, zinc-binding dehydrogenase family protein
91	 70.17	0	122105..122818	+	237	118472123	-	MSMEG_0098	-	methyltransferase
92	 69.14	0	122829..123314	+	161	118469893	-	MSMEG_0099	-	hypothetical protein
93	 66.67	0	123311..123865	+	184	118472794	-	MSMEG_0101	-	hypothetical protein
94	 70.88	+1	123837..124643	-	268	118470992	-	MSMEG_0100	-	phosphotyrosine protein phosphatase ptpb
95	 68.37	0	124640..125875	-	411	118470550	-	MSMEG_0102	-	putative acyl-CoA dehydrogenase
96	 72.67	+1	125900..127099	-	399	118469137	-	MSMEG_0103	-	major facilitator family protein transporter
97	 70.63	+1	127143..128024	-	293	118467624	-	MSMEG_0104	-	transcriptional regulator, LysR family protein
98	 68.05	0	128084..128734	+	216	118471878	-	MSMEG_0105	-	DNA-binding response regulator, LuxR family protein
99	 68.47	0	128750..129916	+	388	118471818	-	MSMEG_0106	-	sensory histidine kinase
100	 67.48	0	129926..131527	-	533	118473313	-	MSMEG_0107	-	cell envelope-related function transcriptional attenuator
67.48	MEAN

3.10	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.