IslandPath Analysis: Salmonella enterica subsp. arizonae serovar 62:z4,z23:--



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.15   STD DEV: 6.23
Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete genome - 1..4600800
4498 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 57.27	0	978..2318	+	446	161501985	-	SARI_00001	-	hypothetical protein
2	 56.32	0	2375..3679	+	434	161501986	-	SARI_00002	-	hypothetical protein
3	 57.39	+1	3757..4899	+	380	161501987	-	SARI_00003	-	hypothetical protein
4	 51.87	0	5009..7765	-	918	161501988	-	SARI_00004	-	hybrid sensory histidine kinase BarA
5	 52.31	0	7823..9118	+	431	161501989	-	SARI_00005	-	23S rRNA 5-methyluridine methyltransferase
6	 54.81	0	9170..11404	+	744	161501990	-	SARI_00006	-	GDP/GTP pyrophosphokinase
7	 50.48	0	11437..12270	+	277	161501991	-	SARI_00007	-	nucleoside triphosphate pyrophosphohydrolase
8	 52.20	0	12498..14135	+	545	161501992	-	SARI_00008	-	CTP synthetase
9	 52.19	0	14218..15516	+	432	161501993	-	SARI_00009	-	phosphopyruvate hydratase
10	 49.41	0	15649..16842	+	397	161501994	-	SARI_00010	-	hypothetical protein
11	 48.55	0	16852..16989	+	45	161501995	-	SARI_00011	-	hypothetical protein
12	 51.34	0	16973..17644	+	223	161501996	-	SARI_00012	-	hypothetical protein
13	 52.07	0	17943..18305	-	120	161501997	-	SARI_00013	-	hypothetical protein
14	 55.06	0	18795..20594	+	599	161501998	-	SARI_00014	-	sulfite reductase subunit alpha
15	 55.34	0	20594..22306	+	570	161501999	-	SARI_00015	-	sulfite reductase subunit beta
16	 55.65	0	22409..23143	+	244	161502000	-	SARI_00016	-	phosphoadenosine phosphosulfate reductase
17	 39.83	-1	23241..24194	-	317	161502001	-	SARI_00017	-	hypothetical protein
18	 37.63	-2	24531..24716	+	61	161502002	-	SARI_00018	-	hypothetical protein
19	 45.63	0	24740..25495	+	251	161502003	-	SARI_00019	-	hypothetical protein
20	 51.38	0	25575..26621	-	348	161502004	-	SARI_00020	-	alkaline phosphatase isozyme conversion aminopeptidase
21	 53.69	0	26873..27781	+	302	161502005	-	SARI_00021	-	sulfate adenylyltransferase subunit 2
22	 54.37	0	27791..29230	+	479	161502006	-	SARI_00022	-	sulfate adenylyltransferase subunit 1
23	 53.96	0	29217..29822	+	201	161502007	-	SARI_00023	-	adenylylsulfate kinase
24	 48.18	0	29840..30196	+	118	161502008	-	SARI_00024	-	hypothetical protein
25	 51.92	0	30387..30698	+	103	161502009	-	SARI_00025	-	cell division protein FtsB
26	 57.24	0	30717..31427	+	236	161502010	-	SARI_00026	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
27	 56.25	0	31427..31906	+	159	161502011	-	SARI_00027	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
28	 52.95	0	31903..32952	+	349	161502012	-	SARI_00028	-	tRNA pseudouridine synthase D
29	 56.69	0	32933..33694	+	253	161502013	-	SARI_00029	-	stationary phase survival protein SurE
30	 56.14	0	33688..34314	+	208	161502014	-	SARI_00030	-	protein-L-isoaspartate O-methyltransferase
31	 51.52	0	34454..34651	-	65	161502015	-	SARI_00031	-	hypothetical protein
32	 52.22	0	34665..35612	+	315	161502016	-	SARI_00032	-	lipoprotein NlpD
33	 51.76	0	35676..36668	+	330	161502017	-	SARI_00033	-	RNA polymerase sigma factor RpoS
34	 50.21	0	36715..36951	-	78	161502018	-	SARI_00034	-	hypothetical protein
35	 55.11	0	36962..38389	-	475	161502019	-	SARI_00035	-	hypothetical protein
36	 56.73	0	38389..38982	-	197	161502020	-	SARI_00036	-	hypothetical protein
37	 52.97	0	39119..39556	+	145	161502021	-	SARI_00037	-	hypothetical protein
38	 52.52	0	40680..41810	-	376	161502022	-	SARI_00039	-	hypothetical protein
39	 54.10	0	41922..42908	+	328	161502023	-	SARI_00040	-	hypothetical protein
40	 56.96	0	42905..43285	+	126	161502024	-	SARI_00041	-	hypothetical protein
41	 56.41	0	43341..45923	-	860	161502025	-	SARI_00042	-	DNA mismatch repair protein
42	 41.24	-1	46026..46379	+	117	161502026	-	SARI_00043	-	hypothetical protein
43	 49.06	0	46535..47011	-	158	161502027	-	SARI_00044	-	hypothetical protein
44	 50.69	0	47233..48171	-	312	161502028	-	SARI_00045	-	hypothetical protein
45	 51.64	0	48295..49638	-	447	161502029	-	SARI_00046	-	hypothetical protein
46	 49.12	0	49882..50337	-	151	161502030	-	SARI_00047	-	hypothetical protein
47	 50.70	0	50412..50981	+	189	161502031	-	SARI_00048	-	hypothetical protein
48	 53.82	0	51090..52031	+	313	161502032	-	SARI_00049	-	hypothetical protein
49	 55.39	0	52044..53630	+	528	161502033	-	SARI_00050	-	hypothetical protein
50	 56.28	0	53630..54919	+	429	161502034	-	SARI_00051	-	hypothetical protein
51	 49.88	0	54932..56146	+	404	161502035	-	SARI_00052	-	hypothetical protein
52	 46.89	0	56215..56487	+	90	161502036	-	SARI_00053	-	hypothetical protein
53	 58.87	+1	56661..56891	-	76	161502037	-	SARI_00054	-	hypothetical protein
54	 52.06	0	56924..57190	-	88	161502038	-	SARI_00055	-	hypothetical protein
55	 30.49	-2	57942..58538	-	198	161502039	-	SARI_00056	-	hypothetical protein
56	 26.98	-2	58813..59001	-	62	161502040	-	SARI_00057	-	hypothetical protein
57	 27.38	-2	59668..60087	-	139	161502041	-	SARI_00058	-	hypothetical protein
58	 37.07	-2	60099..60446	-	115	161502042	-	SARI_00059	-	hypothetical protein
59	 42.22	-1	60431..60880	-	149	161502043	-	SARI_00060	-	hypothetical protein
60	 43.27	-1	60890..61372	-	160	161502044	-	SARI_00061	-	hypothetical protein
61	 49.61	0	61793..62560	-	255	161502045	-	SARI_00062	-	hypothetical protein
62	 56.69	0	62544..64607	-	687	161502046	-	SARI_00063	-	hypothetical protein
63	 61.46	+1	64680..65543	-	287	161502047	-	SARI_00064	-	hypothetical protein
64	 35.66	-2	65676..66062	-	128	161502048	-	SARI_00065	-	hypothetical protein
65	 42.75	-1	66145..67089	-	314	161502049	-	SARI_00066	-	hypothetical protein
66	 57.14	0	67158..67472	-	104	161502050	-	SARI_00067	-	hypothetical protein
67	 51.83	0	67567..68139	+	190	161502051	-	SARI_00068	-	hypothetical protein
68	 51.78	0	68304..68612	-	102	161502053	-	SARI_00070	-	hypothetical protein
69	 50.31	0	68451..68774	+	107	161502052	-	SARI_00069	-	hypothetical protein
70	 48.47	0	68734..69810	+	358	161502054	-	SARI_00071	-	hypothetical protein
71	 40.52	-1	69922..70074	+	50	161502055	-	SARI_00072	-	hypothetical protein
72	 38.51	-2	70155..70598	-	147	161502056	-	SARI_00073	-	hypothetical protein
73	 45.60	0	70957..71706	+	249	161502057	-	SARI_00074	-	hypothetical protein
74	 46.10	0	71703..73394	+	563	161502058	-	SARI_00075	-	hypothetical protein
75	 45.40	0	73391..74509	+	372	161502059	-	SARI_00076	-	hypothetical protein
76	 45.50	0	74594..76591	+	665	161502060	-	SARI_00077	-	hypothetical protein
77	 43.63	-1	76615..77022	+	135	161502061	-	SARI_00078	-	hypothetical protein
78	 53.24	0	77019..78314	+	431	161502062	-	SARI_00079	-	ATP synthase SpaL
79	 40.29	-1	78391..78735	+	114	161502063	-	SARI_00080	-	hypothetical protein
80	 48.91	0	78735..79742	+	335	161502064	-	SARI_00081	-	hypothetical protein
81	 51.43	0	79742..80653	+	303	161502065	-	SARI_00082	-	surface presentation of antigens protein SpaO
82	 40.59	-1	80643..81317	+	224	161502066	-	SARI_00083	-	surface presentation of antigens protein SpaP
83	 45.59	0	81343..81603	+	86	161502067	-	SARI_00084	-	hypothetical protein
84	 47.98	0	81607..82398	+	263	161502068	-	SARI_00085	-	hypothetical protein
85	 41.27	-1	82385..83455	+	356	161502069	-	SARI_00086	-	surface presentation of antigens protein SpaS
86	 42.37	-1	83593..84090	+	165	161502070	-	SARI_00087	-	hypothetical protein
87	 51.15	0	84093..85877	+	594	161502071	-	SARI_00088	-	hypothetical protein
88	 46.83	0	85904..87133	+	409	161502072	-	SARI_00089	-	hypothetical protein
89	 46.63	0	87204..88226	+	340	161502073	-	SARI_00090	-	hypothetical protein
90	 46.09	0	88279..90261	+	660	161502074	-	SARI_00091	-	hypothetical protein
91	 38.96	-1	90280..90528	+	82	161502075	-	SARI_00092	-	acyl carrier protein
92	 38.89	-1	90572..90823	+	83	161502076	-	SARI_00093	-	hypothetical protein
93	 37.40	-2	90858..91250	+	130	161502077	-	SARI_00094	-	hypothetical protein
94	 40.33	-1	91300..92142	+	280	161502078	-	SARI_00095	-	hypothetical protein
95	 37.68	-2	92471..92953	-	160	161502079	-	SARI_00096	-	cell invasion protein
96	 41.52	-1	92971..94632	-	553	161502080	-	SARI_00097	-	invasion protein regulator
97	 39.68	-1	95733..96662	-	309	161502081	-	SARI_00098	-	hypothetical protein
98	 48.09	0	96978..98156	+	392	161502082	-	SARI_00099	-	hypothetical protein
99	 45.83	0	98180..98419	+	79	161502083	-	SARI_00100	-	hypothetical protein
100	 47.39	0	98438..98743	+	101	161502084	-	SARI_00101	-	hypothetical protein
51.15	MEAN

6.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.