IslandPath Analysis: Shewanella baltica OS155



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.84   STD DEV: 3.64
Shewanella baltica OS155, complete genome - 1..5127376
4307 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.56	0	41..1429	+	462	126172258	dnaA	Sbal_0001	-	chromosomal replication initiator protein DnaA
2	 44.96	0	1449..2549	+	366	126172259	-	Sbal_0002	-	DNA polymerase III, beta subunit
3	 44.88	0	2751..3833	+	360	126172260	-	Sbal_0003	-	DNA replication and repair protein RecF
4	 46.40	0	3850..6267	+	805	126172261	-	Sbal_0004	-	DNA gyrase, B subunit
5	 49.17	0	6353..7015	-	220	126172262	-	Sbal_0005	-	glutathione S-transferase domain-containing protein
6	 46.20	0	7256..7558	+	100	126172263	-	Sbal_0006	-	monoheme cytochrome c
7	 47.43	0	7560..8786	+	408	126172264	-	Sbal_0007	-	oxidoreductase, molybdopterin binding
8	 45.31	0	8786..9169	+	127	126172265	-	Sbal_0008	-	monoheme cytochrome c, putative
9	 44.35	0	9166..9501	+	111	126172266	-	Sbal_0009	-	monoheme cytochrome c
10	 48.64	0	9592..10512	-	306	126172267	-	Sbal_0010	-	urea amidolyase related protein
11	 45.34	0	10846..11886	+	346	126172268	-	Sbal_0011	-	putative signal transduction protein
12	 46.67	0	11974..14043	-	689	126172269	glyS	Sbal_0012	-	glycyl-tRNA synthetase, beta subunit
13	 49.23	0	14054..14959	-	301	126172270	glyQ	Sbal_0013	-	glycyl-tRNA synthetase, alpha subunit
14	 45.53	0	15077..15691	+	204	126172271	-	Sbal_0014	-	DNA-3-methyladenine glycosylase I
15	 46.47	0	15877..17673	-	598	126172272	-	Sbal_0015	-	amidohydrolase
16	 46.94	0	17727..19064	-	445	126172273	-	Sbal_0016	-	WD40 domain-containing protein
17	 47.65	0	19327..19773	-	148	126172274	-	Sbal_0017	-	hypothetical protein
18	 46.75	0	19822..20067	-	81	126172275	-	Sbal_0018	-	SirA family protein
19	 50.69	+1	21644..22807	-	387	126172276	fadA	Sbal_0020	-	acetyl-CoA acyltransferase FadA
20	 47.79	0	22830..24980	-	716	126172277	fadB	Sbal_0021	-	fatty oxidation complex, alpha subunit FadB
21	 47.01	0	25471..26793	+	440	126172278	-	Sbal_0022	-	proline dipeptidase
22	 48.02	0	26821..27351	+	176	126172279	-	Sbal_0023	-	hypothetical protein
23	 47.67	0	27513..28970	+	485	126172280	-	Sbal_0024	-	TrkH family potassium uptake protein
24	 44.38	0	28973..29497	+	174	126172281	-	Sbal_0025	-	protoporphyrinogen oxidase
25	 44.98	0	29560..29868	-	102	126172282	-	Sbal_0026	-	regulatory protein, ArsR
26	 47.28	0	30069..30620	+	183	126172283	-	Sbal_0027	-	protoporphyrinogen oxidase
27	 49.41	0	30655..32097	-	480	126172284	-	Sbal_0028	-	TrkH family potassium uptake protein
28	 50.43	0	32118..33527	-	469	126172285	trkA	Sbal_0029	-	TrkA-N domain protein
29	 51.28	+1	33543..34829	-	428	126172286	-	Sbal_0030	-	sun protein
30	 51.83	+1	34831..35787	-	318	126172287	-	Sbal_0031	-	methionyl-tRNA formyltransferase
31	 44.05	0	35796..36308	-	170	126172288	-	Sbal_0032	-	peptide deformylase
32	 47.04	0	36434..37564	+	376	126172289	-	Sbal_0033	-	peptidoglycan-binding LysM
33	 47.98	0	37648..38664	+	338	126172290	-	Sbal_0034	-	DNA protecting protein DprA
34	 39.87	-1	38667..39140	+	157	126172291	-	Sbal_0035	-	hypothetical protein
35	 46.49	0	39254..39823	+	189	126172292	-	Sbal_0036	-	DNA topoisomerase type IA Zn finger domain-containing protein
36	 48.15	0	39950..40516	+	188	126172293	-	Sbal_0037	-	Sua5/YciO/YrdC/YwlC family protein
37	 50.83	+1	40542..41450	+	302	126172294	-	Sbal_0038	-	coproporphyrinogen oxidase
38	 45.66	0	41485..41922	-	145	126172295	-	Sbal_0039	-	globin
39	 51.12	+1	42076..42924	+	282	126172296	-	Sbal_0040	-	shikimate 5-dehydrogenase
40	 47.46	0	42930..43205	+	91	126172297	-	Sbal_0041	-	hypothetical protein
41	 46.99	0	43325..43873	-	182	126172298	-	Sbal_0042	-	carbonic anhydrase
42	 47.37	0	49791..52241	+	816	126172299	-	Sbal_0043	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
43	 46.04	0	52198..53181	-	327	126172300	-	Sbal_0044	-	alpha/beta hydrolase fold
44	 48.07	0	53277..55088	-	603	126172301	-	Sbal_0045	-	hypothetical protein
45	 46.89	0	55299..56294	+	331	126172302	-	Sbal_0046	-	adenosine deaminase
46	 44.59	0	56389..57729	-	446	126172303	-	Sbal_0047	-	oxygen-independent coproporphyrinogen III oxidase
47	 45.51	0	58027..58494	-	155	126172304	-	Sbal_0048	-	hypothetical protein
48	 45.10	0	58569..59129	-	186	126172305	-	Sbal_0049	-	hypothetical protein
49	 41.94	-1	59220..59858	-	212	126172306	-	Sbal_0050	-	hypothetical protein
50	 46.79	0	60679..61302	-	207	126172307	-	Sbal_0051	-	cytochrome c class I
51	 43.64	0	61471..62130	+	219	126172308	-	Sbal_0052	-	GTP-binding protein HSR1-related
52	 49.02	0	63394..66159	-	921	126172309	-	Sbal_0053	-	DNA polymerase I
53	 48.87	0	66547..67209	+	220	126172310	-	Sbal_0054	-	isoprenoid biosynthesis protein
54	 50.12	0	67291..68136	-	281	126172311	-	Sbal_0055	-	rhomboid family protein
55	 47.39	0	68133..68438	-	101	126172312	-	Sbal_0056	-	rhodanese domain-containing protein
56	 48.93	0	68540..69565	-	341	126172313	tdh	Sbal_0057	-	L-threonine 3-dehydrogenase
57	 49.50	0	69577..70770	-	397	126172314	-	Sbal_0058	-	2-amino-3-ketobutyrate coenzyme A ligase
58	 44.60	0	71058..71705	-	215	126172315	-	Sbal_0059	-	TetR family transcriptional regulator
59	 50.71	+1	71848..73113	+	421	126172316	-	Sbal_0060	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
60	 49.60	0	73139..73894	-	251	126172317	-	Sbal_0061	-	lipopolysaccharide kinase
61	 47.32	0	73994..75058	+	354	126172318	-	Sbal_0062	-	glycosyl transferase family protein
62	 43.60	0	75068..76138	+	356	126172319	-	Sbal_0063	-	hypothetical protein
63	 33.24	-2	76123..77178	+	351	126172320	-	Sbal_0064	-	hypothetical protein
64	 36.00	-2	77211..77960	+	249	126172321	-	Sbal_0065	-	glycosyl transferase family protein
65	 33.51	-2	78044..79156	-	370	126172322	-	Sbal_0066	-	glycosyl transferase, group 1
66	 39.13	-2	79156..80277	-	373	126172323	-	Sbal_0067	-	UDP-N-acetylglucosamine 2-epimerase
67	 46.54	0	80574..81065	+	163	126172324	coaD	Sbal_0068	-	pantetheine-phosphate adenylyltransferase
68	 46.75	0	81156..82631	+	491	126172325	-	Sbal_0069	-	hypothetical protein
69	 45.93	0	82697..83704	-	335	126172326	-	Sbal_0070	-	NAD-dependent epimerase/dehydratase
70	 42.87	-1	83728..84891	-	387	126172327	-	Sbal_0071	-	UDP-glucose/GDP-mannose dehydrogenase
71	 49.65	0	85100..85810	+	236	126172328	-	Sbal_0072	-	glycosyl transferase family protein
72	 46.11	0	85831..86151	+	106	126172329	-	Sbal_0073	-	hypothetical protein
73	 50.61	+1	86634..87449	-	271	126172330	-	Sbal_0075	-	formamidopyrimidine-DNA glycosylase
74	 48.46	0	87485..87940	-	151	126172331	-	Sbal_0076	-	hypothetical protein
75	 47.97	0	88030..89013	-	327	126172332	-	Sbal_0077	-	molybdenum cofactor biosynthesis protein A
76	 52.43	+1	89030..90841	-	603	126172333	-	Sbal_0078	-	molybdopterin-guanine dinucleotide biosynthesis protein B
77	 49.58	0	90875..91465	-	196	126172334	-	Sbal_0079	-	molybdopterin-guanine dinucleotide biosynthesis protein A
78	 46.69	0	91449..92159	-	236	126172335	-	Sbal_0080	-	ABC transporter related
79	 52.26	+1	92163..92870	-	235	126172336	-	Sbal_0081	-	binding-protein-dependent transport systems inner membrane component
80	 43.88	0	92867..93691	-	274	126172337	-	Sbal_0082	-	extracellular solute-binding protein
81	 49.41	0	93928..95358	+	476	126172338	-	Sbal_0083	-	two component, sigma54 specific, Fis family transcriptional regulator
82	 48.28	0	95360..97513	+	717	126172339	-	Sbal_0084	-	integral membrane sensor signal transduction histidine kinase
83	 43.79	0	97864..98322	-	152	126172340	-	Sbal_0085	-	GCN5-related N-acetyltransferase
84	 46.21	0	98423..99082	-	219	126172341	-	Sbal_0086	-	hypothetical protein
85	 44.26	0	99315..100055	+	246	126172342	-	Sbal_0087	-	hypothetical protein
86	 49.30	0	100068..101426	-	452	126172343	-	Sbal_0088	-	isochorismate synthase
87	 50.05	0	101851..103974	+	707	126172344	-	Sbal_0089	-	TonB-dependent receptor, plug
88	 51.50	+1	103976..105346	+	456	126172345	-	Sbal_0090	-	ABC transporter related
89	 50.66	+1	105336..106016	+	226	126172346	-	Sbal_0091	-	cobalt transport protein
90	 49.36	0	106009..106551	+	180	126172347	-	Sbal_0092	-	hypothetical protein
91	 52.10	+1	106581..107033	+	150	126172348	-	Sbal_0093	-	hypothetical protein
92	 49.81	0	107054..107320	+	88	126172349	-	Sbal_0094	-	hypothetical protein
93	 49.58	0	107359..107598	+	79	126172350	-	Sbal_0095	-	hypothetical protein
94	 43.58	0	107832..109022	+	396	126172351	-	Sbal_0096	-	metal dependent phosphohydrolase
95	 46.70	0	109135..109770	+	211	126172352	-	Sbal_0097	-	paraquat-inducible protein A
96	 44.12	0	109845..110150	-	101	126172353	-	Sbal_0098	-	hypothetical protein
97	 49.84	0	110147..113200	-	1017	126172354	-	Sbal_0099	-	CzcA family heavy metal efflux protein
98	 50.34	0	113202..114230	-	342	126172355	-	Sbal_0100	-	hypothetical protein
99	 49.18	0	114227..115450	-	407	126172356	-	Sbal_0101	-	hypothetical protein
100	 43.94	0	115596..116123	+	175	126172357	-	Sbal_0102	-	response regulator receiver protein
46.84	MEAN

3.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.