IslandPath Analysis: Aster yellows witches'-broom phytoplasma AYWB



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.55   STD DEV: 4.88
Aster yellows witches'-broom phytoplasma AYWB, complete genome - 1..706569
671 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 21.72	-1	1..1515	+	504	85057281	dnaA	AYWB_001	-	chromosomal replication initiation protein
2	 20.67	-1	1709..2845	+	378	85057282	dnaN	AYWB_002	-	DNA polymerase III, beta subunit
3	 23.61	0	3331..3618	+	95	85057283	rpsF	AYWB_003	-	30S ribosomal protein S6
4	 25.00	0	3633..3812	+	59	85057284	-	AYWB_004	-	hypothetical protein
5	 27.50	0	4082..4321	+	79	85057285	rpsR	AYWB_005	-	30S ribosomal protein S18
6	 28.63	0	4415..6964	+	849	85057286	-	AYWB_006	-	exopolyphosphatase-related protein
7	 28.50	0	6961..8304	+	447	85057287	dnaB	AYWB_007	-	replicative DNA helicase
8	 31.53	0	8371..9426	+	351	85057288	prfA	AYWB_008	-	peptide chain release factor 1
9	 29.27	0	9511..10101	+	196	85057289	sua5	AYWB_009	-	translation factor SUA5 protein
10	 21.09	-1	10110..11081	-	323	85057290	holA	AYWB_010	-	DNA polymerase III, delta subunit
11	 29.61	0	11337..11927	+	196	85057291	-	AYWB_011	-	GTPase EngB
12	 29.04	0	12105..14735	+	876	85057292	valS	AYWB_012	-	valyl-tRNA synthetase
13	 29.03	0	14882..15439	+	185	85057293	-	AYWB_013	-	hypothetical protein
14	 27.47	0	15472..17313	+	613	85057294	cbiO	AYWB_014	-	ABC-type cobalt transport system, ATP-binding protein
15	 26.95	0	17303..18148	+	281	85057295	cbiQ	AYWB_015	-	ABC-type cobalt transport system, permease component CbiQ
16	 24.42	0	18204..21278	-	1024	85057296	-	AYWB_016	-	hypothetical protein
17	 22.46	-1	21643..22065	+	140	85057297	ibpA	AYWB_017	-	molecular chaperone
18	 32.39	0	22660..25422	-	920	85057298	mgtA	AYWB_018	-	cation transport ATPase
19	 26.99	0	26212..27330	+	372	85057299	-	AYWB_019	-	hypothetical protein
20	 21.72	-1	28165..28362	+	65	85057300	-	AYWB_020	-	hypothetical protein
21	 19.87	-1	28378..28533	+	51	85057301	-	AYWB_021	-	hypothetical protein
22	 15.87	-2	28892..29269	+	125	85057302	-	AYWB_022	-	hypothetical protein
23	 23.50	0	30600..30833	+	77	85057303	-	AYWB_023	-	hypothetical protein
24	 24.10	0	30736..31125	+	129	85057304	-	AYWB_024	-	hypothetical protein
25	 35.54	+1	31581..34118	+	845	85057305	nrdA	AYWB_025	-	ribonucleoside-diphosphate reductase alpha chain
26	 30.96	0	34482..35534	+	350	85057306	nrdF	AYWB_026	-	ribonucleotide-diphosphate reductase subunit beta
27	 23.74	0	37720..38157	+	145	85057307	mscL	AYWB_027	-	large-conductance mechanosensitive channel
28	 26.78	0	38354..40078	+	574	85057308	evbG	AYWB_028	-	multidrug resistance ABC transporter ATP-binding and permease protein
29	 26.18	0	40024..41868	+	614	85057309	evbH	AYWB_029	-	multidrug resistance ABC transporter ATP-binding and permease protein
30	 27.54	0	42859..43134	-	91	85057310	-	AYWB_030	-	hypothetical protein
31	 22.33	-1	43086..43403	-	105	85057311	-	AYWB_031	-	hypothetical protein
32	 24.26	0	46277..46684	+	135	85057312	-	AYWB_032	-	hypothetical protein
33	 24.58	0	46715..47068	+	117	85057313	-	AYWB_033	-	hypothetical protein
34	 18.58	-1	47134..47316	+	60	85057314	-	AYWB_034	-	hypothetical protein
35	 29.17	0	47874..48041	+	55	85057315	-	AYWB_035	-	hypothetical protein
36	 17.46	-2	48031..48408	+	125	85057316	-	AYWB_036	-	hypothetical protein
37	 18.59	-1	49061..49555	+	164	85057317	-	AYWB_037	-	hypothetical protein
38	 21.57	-1	49641..49844	+	67	85057318	-	AYWB_038	-	hypothetical protein
39	 23.97	0	49765..50031	+	88	85057319	-	AYWB_039	-	hypothetical protein
40	 21.67	-1	50105..50464	+	119	85057320	-	AYWB_040	-	hypothetical protein
41	 18.50	-1	50394..50912	+	172	85057321	-	AYWB_041	-	hypothetical protein
42	 20.89	-1	51203..51829	-	208	85057322	-	AYWB_042	-	hypothetical protein
43	 25.49	0	52274..52477	-	67	85057323	-	AYWB_043	-	hypothetical protein
44	 24.48	0	52659..52850	-	63	85057324	-	AYWB_044	-	hypothetical protein
45	 26.23	0	52903..53085	-	60	85057325	-	AYWB_045	-	hypothetical protein
46	 26.42	0	53619..53864	+	81	85057326	-	AYWB_046	-	hypothetical protein
47	 25.48	0	53890..54360	+	156	85057327	-	AYWB_047	-	hypothetical protein
48	 28.28	0	54792..55088	+	98	85057328	-	AYWB_048	-	hypothetical protein
49	 30.84	0	55376..55696	+	106	85057329	-	AYWB_049	-	hypothetical protein
50	 22.51	-1	56593..57063	+	156	85057330	-	AYWB_050	-	hypothetical protein
51	 31.54	0	58057..59229	+	390	85057331	sfcA	AYWB_051	-	NAD-dependent malic enzyme
52	 27.60	0	59226..60761	+	511	85057332	citS	AYWB_052	-	malate-sodium symport
53	 27.78	0	61363..62010	+	215	85057333	pgsA	AYWB_053	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
54	 28.89	0	62896..64539	-	547	85057334	srmB	AYWB_054	-	superfamily II DNA/RNA helicase
55	 22.27	-1	65103..65735	-	210	85057335	-	AYWB_055	-	hypothetical protein
56	 21.05	-1	66913..67083	+	56	85057336	-	AYWB_056	-	hypothetical protein
57	 23.53	0	67355..67507	+	50	85057337	-	AYWB_057	-	hypothetical protein
58	 22.40	-1	68141..68323	-	60	85057338	-	AYWB_058	-	hypothetical protein
59	 27.54	0	68483..69517	+	344	85057339	hrcA	AYWB_059	-	heat-inducible transcription repressor
60	 25.62	0	69688..70413	+	241	85057340	grpE	AYWB_060	-	molecular chaperone GrpE protein
61	 34.25	+1	70379..72226	+	615	85057341	dnaK	AYWB_061	-	molecular chaperone DnaK
62	 31.74	0	72363..73430	+	355	85057342	dnaJ	AYWB_062	-	molecular chaperone DnaJ
63	 20.92	-1	73810..73962	+	50	85057343	-	AYWB_063	-	hypothetical protein
64	 30.16	0	74815..75885	+	356	85057344	ftsY	AYWB_064	-	signal recognition particle, docking protein FtsY
65	 28.96	0	75981..77351	+	456	85057345	ffh	AYWB_065	-	signal recognition particle, subunit FFH/SRP54
66	 26.26	0	77554..80097	+	847	85057346	polA	AYWB_066	-	DNA polymerase I
67	 28.04	0	80198..81028	+	276	85057347	nei	AYWB_067	-	formamidopyrimidine-DNA glycosylase
68	 28.14	0	81084..82277	+	397	85057348	dnaB	AYWB_068	-	replication initiation and membrane attachment protein
69	 27.47	0	82362..83180	+	272	85057349	dnaC	AYWB_069	-	DNA replication protein DnaC
70	 37.78	+2	83961..84185	-	74	85057350	cspC	AYWB_070	-	cold shock protein
71	 32.98	+1	84902..85183	+	93	85057351	-	AYWB_071	-	fragment of ATP-dependent Zn protease
72	 22.82	0	85274..85663	+	129	85057352	-	AYWB_072	-	hypothetical protein
73	 22.82	0	85667..86227	+	186	85057353	-	AYWB_073	-	hypothetical protein
74	 27.01	0	87154..87786	+	210	85057354	tmk	AYWB_074	-	thymidylate kinase
75	 28.32	0	87953..88351	+	132	85057355	-	AYWB_075	-	hypothetical protein
76	 27.32	0	88585..88767	+	60	85057356	-	AYWB_076	-	hypothetical protein
77	 28.35	0	89099..89359	+	86	85057357	-	AYWB_077	-	hypothetical protein
78	 28.00	0	89573..89872	+	99	85057358	-	AYWB_078	-	hypothetical protein
79	 26.14	0	90083..90235	+	50	85057359	-	AYWB_079	-	hypothetical protein
80	 26.06	0	90460..90624	+	54	85057360	-	AYWB_080	-	hypothetical protein
81	 20.83	-1	90834..91145	+	103	85057361	-	AYWB_081	-	hypothetical protein
82	 21.44	-1	91341..91811	+	156	85057362	-	AYWB_082	-	hypothetical protein
83	 18.67	-1	91774..92448	+	224	85057363	-	AYWB_083	-	hypothetical protein
84	 23.07	0	92481..93659	+	392	85057364	-	AYWB_084	-	hypothetical protein
85	 20.05	-1	93819..96935	+	1038	85057365	uvrD	AYWB_085	-	UvrD helicase
86	 25.38	0	97131..97658	+	175	85057366	-	AYWB_086	-	hypothetical protein
87	 26.94	0	97633..97992	+	119	85057367	-	AYWB_087	-	hypothetical protein
88	 20.42	-1	99727..99966	+	79	85057368	-	AYWB_088	-	hypothetical protein
89	 24.86	0	100283..100459	+	58	85057369	-	AYWB_089	-	hypothetical protein
90	 28.21	0	101041..102756	-	571	85057370	-	AYWB_090	-	kinase related to dihydroxyacetone kinase
91	 24.30	0	103777..104097	+	106	85057371	-	AYWB_091	-	hypothetical protein
92	 26.17	0	104499..105713	-	404	85057372	potD	AYWB_092	-	spermidine/putrescine-binding protein
93	 30.19	0	105732..106622	-	296	85057373	potC	AYWB_093	-	ABC-type spermidine/putrescine transport system, permease protein PotC
94	 29.56	0	106612..107460	-	282	85057374	potB	AYWB_094	-	ABC-type spermidine/putrescine transport system, permease protein PotB
95	 28.71	0	107454..108707	-	417	85057375	potA	AYWB_095	-	ABC-type spermidine/putrescine transport, ATP-binding protein PotA
96	 31.79	0	109287..111041	+	584	85057376	hflB	AYWB_096	-	ATP-dependent zinc metallopeptidase FtsH
97	 22.62	-1	113107..113274	+	55	85057377	-	AYWB_097	-	hypothetical protein
98	 30.96	0	114437..116161	+	574	85057378	-	AYWB_098	-	Zn-dependent hydrolase
99	 28.82	0	116435..117298	+	287	85057379	degV	AYWB_099	-	DegV family protein
100	 28.57	0	118135..118953	-	272	85057380	cof	AYWB_100	-	HAD family hydrolase
27.55	MEAN

4.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.