IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.16   STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.49	0	346..1824	+	492	78187985	-	Cag_0001	-	chromosomal replication initiator protein, DnaA
2	 39.91	0	2113..3237	+	374	78187986	-	Cag_0002	-	DNA polymerase III, beta chain
3	 38.63	-1	3251..4345	+	364	78187987	-	Cag_0003	-	RecF protein
4	 44.90	0	4354..5295	-	313	78187988	-	Cag_0004	-	hypothetical protein
5	 45.66	0	5321..7048	-	575	78187989	-	Cag_0005	-	glucosamine-fructose-6-phosphate aminotransferase, isomerising
6	 47.81	0	7276..8118	-	280	78187990	-	Cag_0006	-	orotidine 5'-phosphate decarboxylase subfamily protein
7	 47.48	0	8311..10410	+	699	78187991	-	Cag_0007	-	peptidase M41, FtsH
8	 48.13	0	10861..12009	+	382	78187992	-	Cag_0008	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
9	 46.04	0	12186..13547	+	453	78187993	-	Cag_0009	-	peptidase M50, putative membrane-associated zinc metallopeptidase
10	 49.63	+1	13563..14636	+	357	78187994	prfA	Cag_0010	-	peptide chain release factor 1
11	 40.06	0	14728..15366	+	212	78187995	-	Cag_0011	-	hypothetical protein
12	 47.44	0	15391..15780	-	129	78187996	-	Cag_0012	-	camphor resistance CrcB protein
13	 42.31	0	15817..16050	-	77	78187997	-	Cag_0013	-	hypothetical protein
14	 49.17	0	16209..16631	+	140	78187998	-	Cag_0014	-	Holliday junction resolvase YqgF
15	 37.85	-1	16701..16988	+	95	78187999	-	Cag_0015	-	hypothetical protein
16	 34.40	-1	16981..17355	+	124	78188000	-	Cag_0016	-	hypothetical protein
17	 48.98	0	17432..18019	+	195	78188001	pyrE	Cag_0017	-	orotate phosphoribosyltransferase
18	 47.52	0	18027..18893	+	288	78188002	-	Cag_0018	-	prephenate dehydrogenase
19	 45.88	0	18890..19750	+	286	78188003	-	Cag_0019	-	putative NAD+ kinase
20	 50.34	+1	19790..21253	+	487	78188004	-	Cag_0020	-	hypothetical protein
21	 47.92	0	21262..22461	+	399	78188005	-	Cag_0021	-	hypothetical protein
22	 41.94	0	22529..23458	-	309	78188006	-	Cag_0022	-	patatin family protein
23	 47.82	0	23776..24714	+	312	78188007	-	Cag_0023	-	peptide chain release factor 2
24	 49.82	+1	24724..25554	+	276	78188008	-	Cag_0024	-	hypothetical protein
25	 43.59	0	25717..26184	-	155	78188009	mscL	Cag_0025	-	large-conductance mechanosensitive channel
26	 47.63	0	26628..28544	+	638	78188010	secD	Cag_0026	-	preprotein translocase subunit SecD
27	 46.84	0	28632..29564	+	310	78188011	secF	Cag_0027	-	preprotein translocase subunit SecF
28	 48.67	0	29679..30995	+	438	78188012	-	Cag_0028	-	peptidyl-prolyl cis-trans isomerase SurA
29	 46.87	0	31358..33271	-	637	78188013	-	Cag_0029	-	DNA gyrase, B subunit
30	 44.88	0	33852..34154	+	100	78188014	-	Cag_0030	-	ferredoxin, 2Fe-2S
31	 32.79	-2	34161..34343	-	60	78188015	-	Cag_0031	-	hypothetical protein
32	 36.92	-1	34369..34647	-	92	78188016	-	Cag_0032	-	hypothetical protein
33	 35.46	-1	34929..36197	-	422	78188017	-	Cag_0033	-	hypothetical protein
34	 47.19	0	36458..37150	-	230	78188018	-	Cag_0034	-	hypothetical protein
35	 47.86	0	37150..38292	-	380	78188019	-	Cag_0035	-	geranylgeranyl reductase
36	 49.32	0	38299..39768	-	489	78188020	-	Cag_0036	-	glycyl-tRNA synthetase
37	 46.93	0	39973..40950	+	325	78188021	-	Cag_0037	-	hypothetical protein
38	 43.49	0	41185..42159	+	324	78188022	-	Cag_0038	-	hypothetical protein
39	 49.63	+1	42581..44194	-	537	78188023	-	Cag_0039	-	EmrB/QacA family drug resistance transporter
40	 50.34	+1	44199..45227	-	342	78188024	-	Cag_0040	-	multidrug resistance protein A
41	 54.44	+1	45345..46718	-	457	78188025	-	Cag_0041	-	outer membrane protein, putative
42	 36.17	-1	47090..48994	-	634	78188026	-	Cag_0042	-	hypothetical protein
43	 45.66	0	49023..49817	-	264	78188027	-	Cag_0043	-	hypothetical protein
44	 48.91	0	49892..51085	-	397	78188028	pgk	Cag_0044	-	phosphoglycerate kinase
45	 49.55	+1	51249..52259	-	336	78188029	-	Cag_0045	-	aminodeoxychorismate lyase
46	 44.65	0	52277..52603	-	108	78188030	-	Cag_0046	-	chorismate mutase, putative
47	 52.68	+1	52929..53915	+	328	78188031	-	Cag_0047	-	methyltransferase
48	 40.26	0	53994..54224	+	76	78188032	-	Cag_0048	-	hypothetical protein
49	 47.74	0	54326..56317	+	663	78188033	-	Cag_0049	-	penicillin-binding protein 3
50	 51.97	+1	56323..57873	+	516	78188034	-	Cag_0050	-	UDP-N-acetylmuramyl-tripeptide synthetase
51	 50.80	+1	58082..59512	+	476	78188035	-	Cag_0051	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase
52	 43.09	0	59660..60766	+	368	78188036	-	Cag_0052	-	phospho-N-acetylmuramoyl-pentapeptide transferase
53	 50.04	+1	60769..62163	+	464	78188037	-	Cag_0053	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
54	 44.03	0	62160..63374	+	404	78188038	-	Cag_0054	-	cell cycle protein FtsW
55	 50.87	+1	63371..64459	+	362	78188039	-	Cag_0055	-	N-acetylglucosaminyltransferase, MurG
56	 46.51	0	64680..66083	+	467	78188040	-	Cag_0056	-	UDP-N-acetylmuramate--alanine ligase
57	 45.09	0	66233..67108	+	291	78188041	-	Cag_0057	-	FtsQ protein, putative
58	 45.80	0	67141..68448	+	435	78188042	-	Cag_0058	-	cell division protein FtsA
59	 46.42	0	68500..69783	+	427	78188043	-	Cag_0059	-	cell division protein FtsZ
60	 47.18	0	69885..71177	+	430	78188044	-	Cag_0060	-	4-hydroxybutyrate coenzyme A transferase
61	 47.14	0	71235..72002	-	255	78188045	-	Cag_0061	-	hypothetical protein
62	 38.19	-1	72153..72440	+	95	78188046	-	Cag_0062	-	hypothetical protein
63	 35.17	-1	72485..72865	+	126	78188047	-	Cag_0063	-	hypothetical protein
64	 42.20	0	72869..73906	+	345	78188048	-	Cag_0064	-	F0F1 ATP synthase subunit A
65	 50.00	+1	74018..74245	+	75	78188049	-	Cag_0065	-	ATP synthase F0, C subunit
66	 41.86	0	74350..74877	+	175	78188050	-	Cag_0066	-	ATP synthase F0, subunit B
67	 40.37	0	74894..75433	+	179	78188051	-	Cag_0067	-	F0F1 ATP synthase subunit delta
68	 44.55	0	75750..76685	+	311	78188052	-	Cag_0068	-	putative lipoprotein
69	 47.05	0	76707..77282	+	191	78188053	-	Cag_0069	-	nicotinate-nucleotide adenylyltransferase
70	 44.30	0	77346..79004	-	552	78188054	argS	Cag_0070	-	arginyl-tRNA synthetase
71	 46.67	0	79067..79771	-	234	78188055	-	Cag_0071	-	Beta-phosphoglucomutase hydrolase
72	 48.83	0	79762..80826	-	354	78188056	-	Cag_0072	-	tryptophanyl-tRNA synthetase
73	 44.86	0	81266..82315	+	349	78188057	-	Cag_0073	-	deoxyhypusine synthase-like protein
74	 42.00	0	82330..82998	+	222	78188058	-	Cag_0074	-	putative translaldolase
75	 47.93	0	83182..85578	-	798	78188059	-	Cag_0075	-	DNA topoisomerase I
76	 49.28	0	85769..87493	+	574	78188060	-	Cag_0076	-	cell wall hydrolase/autolysin
77	 50.41	+1	87595..88578	+	327	78188061	-	Cag_0077	-	biotin--acetyl-CoA-carboxylase ligase
78	 48.64	0	88598..89590	+	330	78188062	-	Cag_0078	-	Elongator protein 3/MiaB/NifB
79	 51.56	+1	89590..90774	+	394	78188063	-	Cag_0079	-	8-amino-7-oxononanoate synthase
80	 50.00	+1	90774..91547	+	257	78188064	-	Cag_0080	-	hypothetical protein
81	 47.33	0	91532..92317	+	261	78188065	-	Cag_0081	-	biotin biosynthesis protein BioC
82	 46.49	0	92326..93009	+	227	78188066	bioD	Cag_0082	-	dithiobiotin synthetase
83	 50.31	+1	93049..94332	+	427	78188067	-	Cag_0083	-	adenosylmethionine--8-amino-7-oxononanoate aminotransferase
84	 41.21	0	94409..94738	-	109	78188068	-	Cag_0084	-	XRE family transcriptional regulator
85	 39.94	0	94725..95057	-	110	78188069	-	Cag_0085	-	phage-like
86	 40.29	0	95231..96466	+	411	78188070	-	Cag_0086	-	transposase
87	 45.38	0	96733..97122	+	129	78188071	-	Cag_0087	-	Iojap-related protein
88	 45.52	0	97415..99901	+	828	78188072	-	Cag_0088	-	DNA gyrase, subunit A
89	 44.56	0	100407..102116	+	569	78188073	-	Cag_0090	-	CTP synthetase
90	 39.22	0	107762..108169	+	135	78188074	-	Cag_0091	-	hypothetical protein
91	 46.40	0	108181..108708	+	175	78188075	-	Cag_0092	-	hypothetical protein
92	 45.24	0	108712..109719	+	335	78188076	-	Cag_0093	-	heptosyltransferase
93	 42.36	0	109940..110338	+	132	78188077	rpsF	Cag_0094	-	30S ribosomal protein S6
94	 41.18	0	110399..110857	+	152	78188078	-	Cag_0095	-	single-strand binding protein
95	 40.14	0	110910..111188	+	92	78188079	rpsR	Cag_0096	-	30S ribosomal protein S18
96	 43.64	0	111223..111678	+	151	78188080	rplI	Cag_0097	-	50S ribosomal protein L9
97	 43.92	0	111785..112417	-	210	78188081	-	Cag_0098	-	YgfB and YecA
98	 42.22	0	112665..113891	+	408	78188082	-	Cag_0099	-	sulfide dehydrogenase, flavoprotein subunit, putative
99	 49.16	0	114064..115485	+	473	78188083	trmE	Cag_0100	-	tRNA modification GTPase TrmE
100	 44.39	0	115674..116975	-	433	78188084	-	Cag_0101	-	hypothetical protein
44.16	MEAN

5.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.