IslandPath Analysis: Chlamydophila pneumoniae J138



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.89   STD DEV: 2.77
Chlamydophila pneumoniae J138, complete genome - 1..1226565
1069 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.07	0	1..282	-	93	15835536	-	CPj0001	-	hypothetical protein
2	 38.56	0	573..878	+	101	15835537	gatC	CPj0002	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
3	 44.08	+1	895..2373	+	492	15835538	gatA	CPj0003	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
4	 43.01	0	2370..3836	+	488	15835539	gatB	CPj0004	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
5	 41.06	0	4127..6895	+	922	15835540	pmp_1	CPj0005	-	polymorphic outer membrane protein G family protein
6	 51.28	+2	7138..7293	-	51	15835541	-	CPj0006	-	hypothetical protein
7	 40.30	0	7515..10169	+	884	15835542	-	CPj0007	-	hypothetical protein
8	 43.28	0	10645..11358	+	237	15835543	-	CPj0008	-	hypothetical protein
9	 41.21	0	11485..12792	+	435	15835544	-	CPj0009	-	hypothetical protein
10	 44.65	+1	13104..15428	+	774	15835545	-	CPj0010	-	hypothetical protein
11	 38.29	0	15571..16296	+	241	15835546	-	CPj0011	-	hypothetical protein
12	 38.42	0	16323..17894	+	523	15835547	-	CPj0012	-	hypothetical protein
13	 43.29	0	18263..20401	+	712	15835548	pmp_2_1	CPj0013A	-	polymorphic outer membrane protein G family protein
14	 43.86	+1	20332..20787	+	151	15835549	pmp_2_2	CPj0013B	-	polymorphic outer membrane protein G family protein
15	 40.29	0	21043..21603	+	186	15835550	pmp_3_1	CPj0014	-	polymorphic outer membrane protein G family protein
16	 42.43	0	21537..23855	+	772	15835551	pmp_3_2	CPj0015	-	Pmp_3
17	 43.07	0	24094..25377	+	427	15835552	pmp_4_1	CPj0016A	-	polymorphic outer membrane protein G family
18	 43.15	0	25374..25862	+	162	15835553	pmp_4_1_2	CPj0016B	-	polymorphic outer membrane protein G family
19	 44.35	+1	25765..26844	+	359	15835554	pmp_4_2	CPj0017	-	Pmp_4
20	 44.31	+1	27193..28677	+	494	15835555	pmp_5_1	CPj0018	-	polymorphic outer membrane protein G family protein
21	 42.90	0	28693..30030	+	445	15835556	pmp_5_2	CPj0019	-	Pmp_5
22	 43.01	0	30271..32358	-	695	15835557	-	CPj0020	-	Omp
23	 44.23	+1	32375..34081	-	568	15835558	-	CPj0021	-	Omp
24	 40.27	0	34063..34653	-	196	15835559	maf	CPj0022	-	Maf-like protein
25	 41.12	0	34682..36274	-	530	15835560	yjjK	CPj0023	-	ABC transporter protein ATPase
26	 42.07	0	36329..37267	-	312	15835561	xerC	CPj0024	-	site-specific tyrosine recombinase XerC
27	 43.18	0	37352..38275	-	307	15835562	atsA	CPj0025	-	ribonuclease Z
28	 41.98	0	38430..39296	-	288	15835563	-	CPj0026	-	hypothetical protein
29	 40.81	0	39446..41905	-	819	15835564	lon	CPj0027	-	Lon ATP-dependent protease
30	 36.39	-1	42211..42996	-	261	15835565	-	CPj0028	-	hypothetical protein
31	 37.40	-1	43058..43426	-	122	15835566	-	CPj0029	-	hypothetical protein
32	 41.59	0	43562..44203	+	213	15835567	gcp_1	CPj0030	-	O-sialoglycoprotein endopeptidase
33	 40.68	0	44382..44558	+	58	15835568	rpsU	CPj0031	-	30S ribosomal protein S21
34	 43.85	+1	44594..45772	+	392	15835569	dnaJ	CPj0032	-	heat shock protein J
35	 45.16	+1	45809..47845	+	678	15835570	pdhA_pdhB	CPj0033	-	(pyruvate) oxoisovalerate dehydrogenase alpha and beta fusion
36	 41.49	0	47878..49128	-	416	15835571	-	CPj0034	-	hypothetical protein
37	 43.92	+1	49237..50700	-	487	15835572	-	CPj0035	-	hypothetical protein
38	 40.35	0	50673..51470	+	265	15835573	-	CPj0036	-	hypothetical protein
39	 40.98	0	51463..51789	+	108	15835574	ptsH	CPj0037	-	Pts phosphocarrier protein HPr
40	 42.95	0	51790..53505	+	571	15835575	ptsI	CPj0038	-	Pts PEP phosphotransferase
41	 41.92	0	53631..53921	-	96	15835576	ybaB	CPj0039	-	hypothetical protein
42	 40.86	0	53986..55314	-	442	15835577	dnaX_1	CPj0040	-	DNA polymerase III subunits gamma and tau
43	 43.26	0	55667..57016	+	449	15835578	-	CPj0041	-	hypothetical protein
44	 40.74	0	57074..57856	+	260	15835579	-	CPj0042	-	hypothetical protein
45	 43.23	0	58118..60046	+	642	15835580	-	CPj0043	-	hypothetical protein
46	 38.57	0	60090..60452	+	120	15835581	-	CPj0044	-	hypothetical protein
47	 42.48	0	60740..62947	+	735	15835582	-	CPj0045	-	hypothetical protein
48	 34.83	-2	63136..63336	+	66	15835583	-	CPj0047	-	hypothetical protein
49	 41.93	0	63368..65485	+	705	15835584	yqfF	CPj0048	-	inner membrane protein
50	 39.75	0	65495..65977	-	160	15835585	-	CPj0049	-	hypothetical protein
51	 41.48	0	66220..66489	-	89	15835586	-	CPj0050	-	hypothetical protein
52	 41.49	0	66509..66790	+	93	15835587	-	CPj0051	-	hypothetical protein
53	 45.39	+1	66977..67681	-	234	15835588	hemC	CPj0052	-	porphobilinogen deaminase
54	 43.83	+1	67659..69020	-	453	15835589	sms	CPj0053	-	DNA repair protein RadA
55	 43.00	0	68986..69699	-	237	15835590	rnc	CPj0054	-	ribonuclease III
56	 41.08	0	69805..70269	+	154	15835591	-	CPj0055	-	hypothetical protein
57	 43.13	0	70629..72425	+	598	15835592	mrsA	CPj0056	-	phosphomannomutase
58	 40.06	0	72610..73233	+	207	15835593	sodM	CPj0057	-	superoxide dismutase (Mn)
59	 42.93	0	73315..74241	+	308	15835594	accD	CPj0058	-	acetyl-CoA carboxylase subunit beta
60	 45.66	+1	74292..74729	+	145	15835595	dut	CPj0059	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
61	 41.51	0	74731..75207	+	158	15835596	ptsN_1	CPj0060	-	Pts IIA protein
62	 39.09	0	75210..75887	+	225	15835597	ptsN_2	CPj0061	-	PTS system IIA protein
63	 40.98	0	75984..77369	+	461	15835598	-	CPj0062	-	hypothetical protein
64	 36.48	-1	77788..77946	+	52	15835599	-	CPj0063	-	hypothetical protein
65	 46.15	+1	78022..78255	+	77	15835600	-	CPj0064	-	hypothetical protein
66	 41.77	0	78600..80330	+	576	15835601	-	CPj0065	-	hypothetical protein
67	 42.85	0	80601..82334	+	577	15835602	-	CPj0066	-	hypothetical protein
68	 39.31	0	82629..83732	+	367	15835603	-	CPj0067	-	hypothetical protein
69	 36.11	-1	84004..84579	-	191	15835604	-	CPj0068	-	hypothetical protein
70	 44.09	+1	84976..86760	+	594	15835605	-	CPj0069	-	hypothetical protein
71	 36.22	-1	87266..87715	-	149	15835606	-	CPj0071	-	hypothetical protein
72	 37.80	-1	87724..88731	-	335	15835607	-	CPj0072	-	hypothetical protein
73	 42.79	0	89026..89247	+	73	15835608	infA	CPj0073	-	translation initiation factor IF-1
74	 43.12	0	89444..90628	+	394	15835609	tuf	CPj0074	-	elongation factor Tu
75	 32.54	-2	90772..91023	+	83	15835610	secE	CPj0075	-	preprotein translocase subunit SecE
76	 38.25	0	91028..91576	+	182	15835611	nusG	CPj0076	-	transcription antitermination protein NusG
77	 38.26	0	91683..92108	+	141	15835612	rplK	CPj0077	-	50S ribosomal protein L11
78	 38.63	0	92135..92833	+	232	15835613	rplA	CPj0078	-	50S ribosomal protein L1
79	 40.35	0	92849..93361	+	170	15835614	rplJ	CPj0079	-	50S ribosomal protein L10
80	 38.72	0	93405..93794	+	129	15835615	rplL	CPj0080	-	50S ribosomal protein L7/L12
81	 40.20	0	93931..97689	+	1252	15835616	rpoB	CPj0081	-	DNA-directed RNA polymerase subunit beta
82	 40.44	0	97713..101894	+	1393	15835617	rpoC	CPj0082	-	DNA-directed RNA polymerase subunit beta'
83	 38.82	0	102003..102986	+	327	15835618	tal	CPj0083	-	transaldolase B
84	 33.33	-2	103033..103425	+	130	15835619	-	CPj0084	-	ferredoxin
85	 38.98	0	103434..104177	-	247	15835620	-	CPj0085	-	hypothetical protein
86	 40.83	0	104575..105201	+	208	15835621	atpE	CPj0086	-	V-type ATP synthase subunit E
87	 36.83	-1	105250..106050	+	266	15835622	-	CPj0087	-	hypothetical protein
88	 42.00	0	106044..107819	+	591	15835623	atpA	CPj0088	-	V-type ATP synthase subunit A
89	 40.09	0	107824..109140	+	438	15835624	atpB	CPj0089	-	V-type ATP synthase subunit B
90	 39.68	0	109125..109754	+	209	15835625	atpD	CPj0090	-	V-type ATP synthase subunit D
91	 39.74	0	109745..111727	+	660	15835626	atpI	CPj0091	-	V-type ATP synthase subunit I
92	 43.66	+1	111822..112247	+	141	15835627	atpK	CPj0092	-	V-type ATP synthase subunit K
93	 43.53	0	112180..112689	+	169	15835628	-	CPj0093	-	hypothetical protein
94	 42.47	0	112823..115645	+	940	15835629	valS	CPj0094	-	valyl-tRNA synthetase
95	 40.62	0	115666..118464	+	932	161353805	pknD	CPj0095	-	serine/threonine-protein kinase
96	 42.24	0	118505..123985	-	1826	15835631	uvrA	CPj0096	-	excinuclease ABC subunit A
97	 42.54	0	124226..125680	+	484	15835632	pyk	CPj0097	-	pyruvate kinase
98	 39.77	0	125774..126799	-	341	15835633	htrB_2	CPj0098	-	lipid A biosynthesis lauroyl acyltransferase
99	 37.74	-1	126681..127202	-	173	15835634	htrB_1	CPj0098.1	-	acyltransferase
100	 39.49	0	127304..127579	+	91	15835635	-	CPj0099	-	hypothetical protein
40.89	MEAN

2.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.