IslandPath Analysis: Yersinia pestis Angola



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.59   STD DEV: 5.21
Yersinia pestis Angola, complete genome - 1..4504254
3832 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	0	270..710	-	146	162418840	mioC	YpAngola_A0001	-	flavodoxin
2	 41.56	-1	803..1264	-	153	162418440	-	YpAngola_A0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1434..2426	+	330	162419901	asnA	YpAngola_A0003	-	asparagine synthetase AsnA
4	 47.72	0	2525..3991	-	488	162419510	-	YpAngola_A0004	-	hypothetical protein
5	 46.78	0	3995..5533	-	512	162419989	-	YpAngola_A0005	-	regulatory ATPase RavA
6	 45.80	0	5807..7675	+	622	162419440	kup	YpAngola_A0006	-	potassium transport protein Kup
7	 48.10	0	7880..8299	+	139	162420591	rbsD	YpAngola_A0007	-	D-ribose pyranase
8	 50.05	0	8350..9276	+	308	162420036	rbsK	YpAngola_A0008	-	ribokinase
9	 46.46	0	9496..10920	-	474	162421578	-	YpAngola_A0009	-	major facilitator transporter
10	 44.06	0	11000..11689	-	229	162418549	-	YpAngola_A0011	-	GntR family transcriptional regulator
11	 44.22	0	12058..12204	-	48	162419929	-	YpAngola_A0012	-	hypothetical protein
12	 49.55	0	17956..19164	+	402	162420022	-	YpAngola_A0017	-	IS285, transposase
13	 40.86	-1	19222..19779	-	185	162420544	mobB	YpAngola_A0018	-	molybdopterin-guanine dinucleotide biosynthesis protein B
14	 43.54	0	19752..20339	-	195	162420127	mobA	YpAngola_A0019	-	molybdopterin-guanine dinucleotide biosynthesis protein A
15	 41.11	-1	20493..20762	+	89	162421614	-	YpAngola_A0020	-	hypothetical protein
16	 46.50	0	20853..21839	+	328	162421169	-	YpAngola_A0021	-	serine/threonine protein kinase
17	 42.15	-1	21867..22490	+	207	162418848	dsbA	YpAngola_A0022	-	periplasmic protein disulfide isomerase I
18	 47.48	0	22982..25780	+	932	162418335	polA	YpAngola_A0023	-	DNA polymerase I
19	 46.39	0	26188..26838	-	216	162420510	-	YpAngola_A0024	-	GTPase EngB
20	 48.50	0	27583..28149	+	188	162420098	-	YpAngola_A0025	-	hypothetical protein
21	 47.74	0	28332..29705	+	457	162421654	hemN	YpAngola_A0026	-	coproporphyrinogen III oxidase
22	 52.65	0	29759..31171	-	470	162421177	ntrC	YpAngola_A0027	-	nitrogen regulation protein NR(I)
23	 49.24	0	31179..32228	-	349	162418453	ntrB	YpAngola_A0028	-	nitrogen regulation protein NR(II)
24	 46.08	0	32466..32975	-	169	162421858	-	YpAngola_A0029	-	IS1541, transposase
25	 50.78	0	33192..34601	-	469	162418660	glnA	YpAngola_A0030	-	glutamine synthetase
26	 45.83	0	34959..35102	+	47	162418157	-	YpAngola_A0031	-	hypothetical protein
27	 48.96	0	35162..36985	+	607	162420145	typA	YpAngola_A0032	-	GTP-binding protein TypA/BipA
28	 44.16	0	37307..37897	+	196	162419585	-	YpAngola_A0033	-	phosphatase
29	 48.02	0	37994..38878	+	294	162419107	rbn	YpAngola_A0034	-	ribonuclease BN
30	 48.86	0	38885..39322	+	145	162420883	dtd	YpAngola_A0035	-	D-tyrosyl-tRNA deacylase
31	 51.90	0	39396..40871	-	491	162420449	-	YpAngola_A0036	-	transposase
32	 50.87	0	41141..42064	+	307	162421692	-	YpAngola_A0037	-	acetyltransferase domain-containing protein
33	 48.30	0	42199..43908	-	569	162421773	-	YpAngola_A0038	-	asmA family protein
34	 50.43	0	44056..45441	-	461	162418696	yicE	YpAngola_A0039	-	xanthine permease
35	 50.04	0	45679..46893	+	404	162418297	gltS	YpAngola_A0040	-	sodium/glutamate symport carrier protein
36	 51.63	0	47259..49340	-	693	162419548	recG	YpAngola_A0041	-	ATP-dependent DNA helicase RecG
37	 49.64	0	49341..50033	-	230	162419568	trmH	YpAngola_A0042	-	tRNA guanosine-2'-O-methyltransferase
38	 48.93	0	50039..52147	-	702	162419160	spoT	YpAngola_A0043	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
39	 51.45	0	52167..52442	-	91	162421700	rpoZ	YpAngola_A0044	-	DNA-directed RNA polymerase subunit omega
40	 46.31	0	52497..53120	-	207	162420259	gmk	YpAngola_A0045	-	guanylate kinase
41	 48.60	0	53548..55224	+	558	162420613	ligA2	YpAngola_A0046	-	NAD-dependent DNA ligase LigB
42	 48.50	0	56263..57126	-	287	162421145	-	YpAngola_A0048	-	hypothetical protein
43	 51.32	0	57253..57969	+	238	162421592	rph	YpAngola_A0049	-	ribonuclease PH
44	 46.08	0	58094..58603	+	169	162420108	-	YpAngola_A0050	-	IS1541, transposase
45	 50.77	0	58846..59493	+	215	162420480	pyrE	YpAngola_A0051	-	orotate phosphoribosyltransferase
46	 47.91	0	59628..60224	-	198	162419507	-	YpAngola_A0052	-	nucleoid occlusion protein
47	 49.12	0	60346..60801	-	151	162419944	dut	YpAngola_A0053	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
48	 47.67	0	60782..62113	-	443	162418631	coaBC	YpAngola_A0054	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
49	 45.44	0	62193..62861	+	222	162421088	radC	YpAngola_A0055	-	DNA repair protein RadC
50	 50.63	0	63124..63360	+	78	162421887	rpmB	YpAngola_A0056	-	50S ribosomal protein L28
51	 39.29	-1	63372..63539	+	55	162420005	rpmG	YpAngola_A0057	-	50S ribosomal protein L33
52	 48.89	0	63622..64431	+	269	162418456	mutM	YpAngola_A0058	-	formamidopyrimidine-DNA glycosylase
53	 46.25	0	64437..64916	-	159	162421465	coaD	YpAngola_A0059	-	phosphopantetheine adenylyltransferase
54	 46.62	0	64913..65695	-	260	162421414	-	YpAngola_A0060	-	lipopolysaccharide core biosynthesis glycosyl transferase
55	 50.55	0	65696..66973	-	425	162420891	kdtA	YpAngola_A0061	-	3-deoxy-D-manno-octulosonic-acid transferase
56	 50.72	0	67393..68358	-	321	162420814	rfaC	YpAngola_A0062	-	ADP-heptose:LPS heptosyl transferase I
57	 51.74	0	68358..69422	-	354	162420304	rfaF	YpAngola_A0063	-	ADP-heptose:LPS heptosyltransferase II
58	 45.12	0	69453..70385	-	310	162418166	rfaD	YpAngola_A0064	-	ADP-L-glycero-D-mannoheptose-6-epimerase
59	 50.08	0	70601..71842	+	413	162418575	kbl	YpAngola_A0065	-	2-amino-3-ketobutyrate coenzyme A ligase
60	 48.15	0	71852..72877	+	341	162419275	tdh	YpAngola_A0066	-	L-threonine 3-dehydrogenase
61	 50.18	0	73973..75325	-	450	162420738	-	YpAngola_A0068	-	hypothetical protein
62	 50.13	0	75353..76900	-	515	162421119	gpmI	YpAngola_A0069	-	phosphoglyceromutase
63	 45.06	0	77297..77731	+	144	162421581	-	YpAngola_A0070	-	rhodanese domain-containing protein
64	 51.41	0	77850..78098	+	82	162418373	grxC	YpAngola_A0071	-	glutaredoxin 3
65	 48.43	0	78186..78662	+	158	162419011	secB	YpAngola_A0072	-	preprotein translocase subunit SecB
66	 51.57	0	78662..79681	+	339	162419751	gpsA	YpAngola_A0073	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
67	 49.70	0	79944..80768	+	274	162420074	cysE	YpAngola_A0074	-	serine acetyltransferase
68	 49.08	0	80891..81379	-	162	162420361	-	YpAngola_A0075	-	RNA methyltransferase
69	 50.73	0	81568..82389	+	273	162421118	-	YpAngola_A0076	-	regulatory protein ada (regulatory protein of adaptative response)
70	 52.79	0	82471..83493	+	340	162421422	-	YpAngola_A0077	-	transposase for insertion sequence
71	 50.38	0	83493..84272	+	259	162421756	-	YpAngola_A0078	-	transposase/IS protein
72	 49.89	0	84640..86016	-	458	162419902	cpxA	YpAngola_A0080	-	two-component sensor protein
73	 49.93	0	86013..86711	-	232	162420224	cpxR2	YpAngola_A0081	-	DNA-binding transcriptional regulator CpxR
74	 46.63	0	86885..87373	+	162	162420508	-	YpAngola_A0082	-	periplasmic stress adaptor protein CpxP
75	 46.33	0	87830..88006	+	58	162421116	-	YpAngola_A0083	-	hypothetical protein
76	 50.94	0	88051..89010	+	319	162421671	-	YpAngola_A0084	-	hypothetical protein
77	 48.50	0	89572..90474	+	300	162418138	fieF	YpAngola_A0087	-	ferrous iron efflux protein F
78	 47.15	0	90692..91675	+	327	162419444	pfkA	YpAngola_A0088	-	6-phosphofructokinase
79	 46.06	0	91896..92885	+	329	162419271	-	YpAngola_A0089	-	sulfate transporter subunit
80	 48.23	0	93135..93953	-	272	162419581	-	YpAngola_A0090	-	hypothetical protein
81	 44.61	0	94029..95456	-	475	162420835	-	YpAngola_A0091	-	divalent anion:Na+ symporter (DASS) family protein
82	 54.06	+1	95522..96235	-	237	162421101	ligK	YpAngola_A0092	-	hypothetical protein
83	 51.63	0	96232..96969	-	245	162419643	-	YpAngola_A0093	-	hypothetical protein
84	 50.08	0	97106..98341	+	411	162419827	-	YpAngola_A0094	-	LysR family substrate binding transcriptional regulator
85	 48.96	0	98573..99340	-	255	162420847	tpiA	YpAngola_A0095	-	triosephosphate isomerase
86	 45.13	0	99469..100104	-	211	162420311	-	YpAngola_A0096	-	hypothetical protein
87	 51.95	0	100252..100686	+	144	162421850	-	YpAngola_A0097	-	hypothetical protein
88	 52.07	0	101008..101754	-	248	162421018	fpr	YpAngola_A0098	-	ferredoxin-NADP reductase
89	 51.80	0	101909..102964	-	351	162421185	glpX	YpAngola_A0099	-	fructose 1,6-bisphosphatase II
90	 52.03	0	103156..104679	-	507	162418727	glpK	YpAngola_A0100	-	glycerol kinase
91	 50.88	0	104856..105704	-	282	162418263	glpF	YpAngola_A0101	-	glycerol uptake facilitator protein
92	 42.92	0	106332..106571	+	79	162418438	-	YpAngola_A0102	-	hypothetical protein
93	 45.69	0	106779..107288	-	169	162418550	-	YpAngola_A0103	-	IS1541, transposase
94	 50.00	0	107414..107599	+	61	162419770	-	YpAngola_A0104	-	hypothetical protein
95	 43.83	0	107608..109722	-	704	162419349	-	YpAngola_A0105	-	bacteriocin ABC transporter, ATP-binding/permease protein
96	 39.13	-1	109715..111007	-	430	162420638	-	YpAngola_A0106	-	MFP family transporter
97	 45.83	0	111220..111459	+	79	162420640	-	YpAngola_A0107	-	hypothetical protein
98	 29.33	-2	111634..111783	+	49	162420207	-	YpAngola_A0108	-	hypothetical protein
99	 53.37	+1	112140..112673	+	177	162421432	-	YpAngola_A0109	-	hypothetical protein
100	 47.53	0	112790..113275	-	161	162418907	rraA	YpAngola_A0110	-	ribonuclease activity regulator protein RraA
47.59	MEAN

5.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.