IslandPath Analysis: Campylobacter jejuni subsp. jejuni NCTC 11168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.55   STD DEV: 3.69
Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome - 1..1641481
1634 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.08	0	1..1323	+	440	15791400	dnaA	Cj0001	-	chromosomal replication initiation protein
2	 25.94	-1	1483..2550	+	355	15791401	dnaN	Cj0002	-	DNA polymerase III subunit beta
3	 33.16	0	2579..4888	+	769	15791402	gyrB	Cj0003	-	DNA gyrase subunit B
4	 31.87	0	4916..5257	-	113	15791403	-	Cj0004c	-	putative periplasmic protein
5	 32.85	0	5260..6498	-	412	15791404	-	Cj0005c	-	putative molybdenum containing oxidoreductase
6	 31.88	0	6703..8010	+	435	15791405	-	Cj0006	-	Na+/H+ antiporter family protein
7	 34.67	+1	8144..12634	+	1496	15791406	gltB	Cj0007	-	glutamate synthase, large subunit
8	 24.60	-1	12644..14395	+	583	15791407	-	Cj0008	-	hypothetical protein
9	 34.72	+1	14398..15843	+	481	15791408	gltD	Cj0009	-	putative oxidoreductase
10	 32.12	0	15844..16419	-	191	15791409	rnhB	Cj0010c	-	ribonuclease HII
11	 27.08	0	16452..16691	-	79	15791410	-	Cj0011c	-	competence protein ComEA
12	 35.80	+1	16756..17403	-	215	15791411	-	Cj0012c	-	rubrerythrin
13	 36.97	+1	17563..19239	+	558	15791412	ilvD	Cj0013	-	dihydroxy-acid dehydratase
14	 35.05	+1	19251..19775	-	174	15791413	-	Cj0014c	-	putative integral membrane protein
15	 32.36	0	19867..21093	-	408	15791414	-	Cj0015c	-	hypothetical protein
16	 34.22	0	21159..21833	+	224	15791415	-	Cj0016	-	putative transcriptional regulatory protein
17	 33.33	0	21854..23380	-	508	15791416	-	Cj0017c	-	disulfide bond formation protein, DsbB family
18	 31.55	0	23392..23559	-	55	15791417	-	Cj0018c	-	hypothetical protein
19	 27.66	0	23665..25443	-	592	15791418	-	Cj0019c	-	MCP domain-containing signal transducer
20	 31.91	0	25433..26347	-	304	15791419	-	Cj0020c	-	cytochrome C551 peroxidase
21	 31.97	0	26411..27289	-	292	15791420	-	Cj0021c	-	fumarylacetoacetate hydrolase family protein
22	 29.46	0	27402..28304	-	300	15791421	-	Cj0022c	-	putative ribosomal pseudouridine synthase
23	 34.31	+1	28382..29710	+	442	15791422	purB	Cj0023	-	adenylosuccinate lyase
24	 33.67	0	29726..32095	+	789	15791423	nrdA	Cj0024	-	ribonucleotide-diphosphate reductase subunit alpha
25	 31.46	0	32134..33519	-	461	15791424	-	Cj0025c	-	sodium/dicarboxylate symporter
26	 33.65	0	33639..34262	-	207	15791425	thyX	Cj0026c	-	FAD-dependent thymidylate synthase
27	 34.38	+1	34382..36013	+	543	15791426	pyrG	Cj0027	-	CTP synthetase
28	 29.83	0	36000..37571	+	523	15791427	recJ	Cj0028	-	single-stranded-DNA-specific exonuclease RecJ
29	 34.24	0	37667..38662	+	331	15791428	ansA	Cj0029	-	L-asparaginase
30	 20.53	-2	44966..46363	+	465	15791429	-	Cj0030	-	hypothetical protein
31	 30.38	0	46424..49027	+	867	15791430	-	Cj0031	-	type II restriction-modification enzyme
32	 31.09	0	48996..50156	+	386	15791431	-	Cj0032	-	putative type IIS restriction /modification enzyme, C-terminal half
33	 23.74	-1	50156..51937	+	593	15791432	-	Cj0033	-	putative integral membrane protein
34	 32.34	0	51967..52668	-	233	15791433	-	Cj0034c	-	hypothetical protein
35	 35.33	+1	52665..53867	-	400	15791434	-	Cj0035c	-	putative efflux protein
36	 31.04	0	53970..55319	+	449	15791435	-	Cj0036	-	hypothetical protein
37	 36.59	+1	55343..56386	-	347	15791436	-	Cj0037c	-	cytochrome c family protein
38	 25.00	-1	56564..57211	-	215	15791437	-	Cj0038c	-	hypothetical protein
39	 37.26	+1	57211..59019	-	602	15791438	typA	Cj0039c	-	GTP-binding protein TypA
40	 23.15	-2	59154..59477	+	107	15791439	-	Cj0040	-	hypothetical protein
41	 26.38	-1	59493..61289	+	598	15791440	-	Cj0041	-	hypothetical protein
42	 36.50	+1	61343..62227	+	294	15791441	flgD	Cj0042	-	flagellar basal body rod modification protein
43	 34.07	0	62231..63868	+	545	15791442	flgE	Cj0043	-	flagellar hook protein
44	 25.53	-1	63872..65743	-	623	15791443	-	Cj0044c	-	hypothetical protein
45	 28.08	0	65744..66466	-	240	15791444	-	Cj0045c	-	putative iron-binding protein
46	 32.74	0	68532..69548	-	338	15791445	trmU	Cj0053c	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
47	 31.19	0	69548..70153	-	201	15791446	-	Cj0054c	-	lysine decarboxylase family protein
48	 28.48	0	70274..71098	-	274	15791447	-	Cj0055c	-	hypothetical protein
49	 32.85	0	71155..71571	-	138	15791448	-	Cj0056c	-	hypothetical protein
50	 31.11	0	72005..72859	+	284	15791449	-	Cj0057	-	putative periplasmic protein
51	 28.83	0	72844..73443	+	199	15791450	-	Cj0058	-	putative periplasmic protein
52	 33.10	0	73492..74334	-	280	15791451	fliY	Cj0059c	-	flagellar motor switch protein FliY
53	 33.80	0	74331..75410	-	359	15791452	fliM	Cj0060c	-	flagellar motor switch protein FliM
54	 32.50	0	75410..76126	-	238	15791453	fliA	Cj0061c	-	flagellar biosynthesis sigma factor
55	 26.89	0	76083..76439	-	118	15791454	-	Cj0062c	-	hypothetical protein
56	 31.26	0	76458..77324	-	288	15791455	-	Cj0063c	-	ATPase, ParA family
57	 30.58	0	77317..78771	-	484	15791456	flhF	Cj0064c	-	flagellar biosynthesis regulator FlhF
58	 30.59	0	78781..79254	-	157	15791457	folK	Cj0065c	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
59	 35.21	+1	79257..79736	-	159	15791458	aroQ	Cj0066c	-	3-dehydroquinate dehydratase
60	 28.86	0	79827..81056	+	409	15791459	-	Cj0067	-	chlorohydrolase
61	 33.00	0	81044..81940	+	298	15791460	pspA	Cj0068	-	signal peptide peptidase SppA, 36K type
62	 34.30	+1	82019..83050	+	343	15791461	-	Cj0069	-	hypothetical protein
63	 25.16	-1	83047..83205	-	52	15791462	-	Cj0070c	-	hypothetical protein
64	 30.75	0	84087..84743	-	218	15791463	-	Cj0073c	-	hypothetical protein
65	 34.79	+1	84736..86175	-	479	15791464	-	Cj0074c	-	iron-sulfur cluster binding protein
66	 33.20	0	86172..86912	-	246	15791465	-	Cj0075c	-	cysteine-rich domain protein
67	 35.12	+1	87036..88718	-	560	15791466	lctP	Cj0076c	-	L-lactate permease
68	 31.23	0	88890..89459	-	189	15791467	cdtC	Cj0077c	-	cytolethal distending toxin
69	 36.34	+1	89470..90267	-	265	15791468	cdtB	Cj0078c	-	cytolethal distending toxin
70	 34.32	+1	90264..91070	-	268	15791469	cdtA	Cj0079c	-	cytolethal distending toxin
71	 21.48	-2	91147..91416	+	89	15791470	-	Cj0080	-	hypothetical protein
72	 34.68	+1	91417..92979	+	520	15791471	cydA	Cj0081	-	cytochrome d ubiquinol oxidase, subunit I
73	 31.29	0	92979..94103	+	374	15791472	cydB	Cj0082	-	cytochrome d ubiquinol oxidase, subunit II
74	 26.58	-1	94297..94992	-	231	15791473	-	Cj0085c	-	putative amino acid recemase
75	 28.88	0	95108..95803	-	231	15791474	ung	Cj0086c	-	uracil-DNA glycosylase
76	 33.26	0	96074..97480	+	468	15791475	aspA	Cj0087	-	aspartate ammonia-lyase
77	 37.22	+1	97496..98833	+	445	15791476	dcuA	Cj0088	-	anaerobic C4-dicarboxylate transporter
78	 27.68	0	98941..100302	+	453	15791477	-	Cj0089	-	putative lipoprotein
79	 26.83	-1	100312..100680	+	122	15791478	-	Cj0090	-	putative lipoprotein
80	 34.78	+1	100704..101327	+	207	15791479	-	Cj0091	-	putative lipoprotein
81	 31.17	0	101410..102747	+	445	15791480	-	Cj0092	-	putative periplasmic protein
82	 32.50	0	102757..103959	+	400	15791481	-	Cj0093	-	putative periplasmic protein
83	 35.28	+1	104118..104426	+	102	15791482	rplU	Cj0094	-	50S ribosomal protein L21
84	 37.25	+1	104437..104691	+	84	15791483	rpmA	Cj0095	-	50S ribosomal protein L27
85	 35.90	+1	104798..105850	+	350	15791484	obgE	Cj0096	-	GTPase ObgE
86	 32.28	0	105955..106710	+	251	15791485	proB	Cj0097	-	gamma-glutamyl kinase
87	 32.46	0	106784..107701	+	305	15791486	fmt	Cj0098	-	methionyl-tRNA formyltransferase
88	 29.36	0	107664..108317	+	217	15791487	birA	Cj0099	-	biotin--protein ligase
89	 30.92	0	108314..109099	+	261	15791488	-	Cj0100	-	chromosome partitioning protein, ParA family
90	 26.40	-1	109105..109941	+	278	15791489	-	Cj0101	-	chromosome partitioning protein, ParB family
91	 28.40	0	110002..110427	+	141	15791490	atpF'	Cj0102	-	F0F1 ATP synthase subunit B'
92	 25.93	-1	110438..110950	+	170	15791491	atpF	Cj0103	-	F0F1 ATP synthase subunit B
93	 21.84	-2	110953..111474	+	173	15791492	atpH	Cj0104	-	F0F1 ATP synthase subunit delta
94	 35.19	+1	111488..112993	+	501	15791493	atpA	Cj0105	-	F0F1 ATP synthase subunit alpha
95	 28.93	0	113002..113886	+	294	15791494	atpG	Cj0106	-	F0F1 ATP synthase subunit gamma
96	 35.41	+1	113912..115309	+	465	15791495	atpD	Cj0107	-	F0F1 ATP synthase subunit beta
97	 35.13	+1	115313..115702	+	129	15791496	atpC	Cj0108	-	F0F1 ATP synthase subunit epsilon
98	 29.73	0	115702..116256	+	184	15791497	exbB3	Cj0109	-	ExbB\TolQ family transport protein
99	 28.46	0	116265..116654	+	129	15791498	exbD3	Cj0110	-	ExbD\TolR family transport protein
100	 28.72	0	116657..117436	+	259	15791499	-	Cj0111	-	TonB domain protein
30.55	MEAN

3.69	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.