IslandPath Analysis: Thiomicrospira crunogena XCL-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.52   STD DEV: 3.38
Thiomicrospira crunogena XCL-2, complete genome - 1..2427734
2196 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.44	0	1..1404	+	467	78484347	-	Tcr_0001	-	chromosomal replication initiator protein DnaA
2	 44.44	0	1580..2686	+	368	78484348	-	Tcr_0002	-	DNA polymerase III, beta subunit
3	 48.48	+1	2785..3873	+	362	78484349	-	Tcr_0003	-	DNA replication and repair protein RecF
4	 44.79	0	3978..4649	+	223	78484350	-	Tcr_0004	-	two component transcriptional regulator
5	 44.44	0	4646..5986	+	446	78484351	-	Tcr_0005	-	periplasmic sensor signal transduction histidine kinase
6	 44.64	0	6102..7295	+	397	78484352	-	Tcr_0006	-	Outer membrane protein-like
7	 45.12	0	7292..8428	+	378	78484353	-	Tcr_0007	-	secretion protein HlyD
8	 46.97	+1	8430..11516	+	1028	78484354	-	Tcr_0008	-	heavy metal efflux pump CzcA
9	 44.55	0	11513..11833	+	106	78484355	-	Tcr_0009	-	hypothetical protein
10	 48.31	+1	11988..12548	+	186	78484356	-	Tcr_0010	-	hypothetical protein
11	 47.59	+1	12559..13596	+	345	78484357	-	Tcr_0011	-	hypothetical protein
12	 45.70	0	13889..16330	+	813	78484358	-	Tcr_0012	-	DNA gyrase, B subunit
13	 42.36	0	16506..17447	+	313	78484359	-	Tcr_0013	-	phosphoribulokinase
14	 43.47	0	17520..19403	-	627	78484360	-	Tcr_0014	-	hypothetical protein
15	 41.67	0	19571..20410	+	279	78484361	-	Tcr_0015	-	MltA-interacting MipA
16	 46.83	0	20441..20818	-	125	78484362	-	Tcr_0016	-	RNA-binding S4
17	 46.60	0	20832..21803	-	323	78484363	-	Tcr_0017	-	coproporphyrinogen III oxidase
18	 46.40	0	21893..22711	+	272	78484364	-	Tcr_0018	-	peptidase M48, Ste24p
19	 46.88	0	22708..23268	-	186	78484365	-	Tcr_0019	-	SUA5/yciO/yrdC-like
20	 44.42	0	23428..24573	+	381	78484366	-	Tcr_0020	-	polysaccharide deacetylase
21	 41.19	0	25085..26356	+	423	78484367	-	Tcr_0021	-	diguanylate cyclase
22	 38.81	-1	26396..26815	+	139	118139509	-	Tcr_0022	-	hypothetical protein
23	 45.40	0	26823..27452	+	209	78484369	-	Tcr_0023	-	lysine exporter protein LysE/YggA
24	 42.49	0	27566..28963	+	465	78484370	-	Tcr_0024	-	beta-lactamase-like
25	 50.56	+2	29245..29964	+	239	78484371	-	Tcr_0025	-	hypothetical protein
26	 45.10	0	29982..31052	-	356	78484372	-	Tcr_0026	-	hypothetical protein
27	 39.65	-1	31218..34097	-	959	78484373	-	Tcr_0027	-	methyl-accepting chemotaxis sensory transducer
28	 38.15	-1	34387..35154	-	255	78484374	-	Tcr_0028	-	diguanylate phosphodiesterase
29	 44.79	0	35332..36684	+	450	78484375	-	Tcr_0029	-	Sodium/sulphate symporter
30	 46.09	0	36688..37902	-	404	78484376	-	Tcr_0030	-	Sodium/hydrogen exchanger
31	 40.67	0	38186..39412	+	408	78484377	-	Tcr_0031	-	hypothetical protein
32	 41.85	0	39663..40460	+	265	78484378	-	Tcr_0032	-	ABC transporter related
33	 44.66	0	40487..41740	+	417	78484379	-	Tcr_0033	-	sulfonate ABC transporter, periplasmic sulfonate-binding protein, putative
34	 48.98	+1	41737..42567	+	276	78484380	-	Tcr_0034	-	binding-protein dependent transport system inner membrane protein
35	 45.43	0	42903..44597	+	564	78484381	-	Tcr_0035	-	NifA subfamily transcriptional regulator
36	 49.95	+1	44664..45698	-	344	78484382	-	Tcr_0036	-	ribosome-associated GTPase
37	 47.22	+1	46099..47466	-	455	78484383	-	Tcr_0037	-	rubredoxin-type Fe(Cys)4 protein
38	 39.61	-1	47476..48558	-	360	78484384	-	Tcr_0038	-	putative acyl-CoA dehydrogenase
39	 42.41	0	48617..49156	-	179	78484385	-	Tcr_0039	-	OsmC-like protein
40	 43.47	0	49479..49922	+	147	78484386	-	Tcr_0040	-	cyanate hydratase
41	 47.13	+1	50074..50718	+	214	78484387	-	Tcr_0041	-	2OG-Fe(II) oxygenase
42	 42.27	0	50787..51536	-	249	78484388	-	Tcr_0042	-	hypothetical protein
43	 42.51	0	51696..52676	-	326	78484389	-	Tcr_0043	-	homoserine kinase
44	 44.89	0	52701..55520	+	939	78484390	-	Tcr_0044	-	DNA polymerase I
45	 43.97	0	55621..56889	+	422	78484391	-	Tcr_0045	-	hypothetical protein
46	 41.02	0	56983..57711	+	242	78484392	-	Tcr_0046	-	hypothetical protein
47	 42.57	0	57757..58395	-	212	78484393	-	Tcr_0047	-	GTP-binding protein, HSR1-related
48	 39.45	-1	58499..60493	+	664	78484394	-	Tcr_0048	-	ResB-like
49	 41.24	0	60490..61665	+	391	78484395	-	Tcr_0049	-	cytochrome c assembly protein
50	 38.62	-1	61689..62312	+	207	78484396	-	Tcr_0050	-	DSBA oxidoreductase
51	 43.43	0	62478..64121	+	547	78484397	-	Tcr_0051	-	acetolactate synthase
52	 31.86	-2	64175..64513	+	112	78484398	-	Tcr_0052	-	hypothetical protein
53	 37.74	-1	64517..65083	-	188	78484399	-	Tcr_0053	-	nitroreductase
54	 34.97	-2	65366..66280	+	304	78484400	-	Tcr_0054	-	LysR family transcriptional regulator
55	 36.92	-1	66302..67054	+	250	78484401	-	Tcr_0055	-	VacJ-like lipoprotein
56	 37.65	-1	67064..68128	+	354	78484402	-	Tcr_0056	-	secretion protein HlyD
57	 38.40	-1	68140..71199	+	1019	78484403	-	Tcr_0057	-	acriflavin resistance protein
58	 38.68	-1	71226..71543	-	105	78484404	-	Tcr_0058	-	putative monovalent cation/H+ antiporter subunit G
59	 37.04	-1	71558..71827	-	89	78484405	-	Tcr_0059	-	putative monovalent cation/H+ antiporter subunit F
60	 37.75	-1	71821..72318	-	165	78484406	-	Tcr_0060	-	cation antiporter
61	 44.34	0	72315..73841	-	508	78484407	-	Tcr_0061	-	NADH dehydrogenase (quinone)
62	 44.94	0	73838..74242	-	134	78484408	-	Tcr_0062	-	NADH-ubiquinone oxidoreductase, chain 4L
63	 44.94	0	74242..77085	-	947	78484409	-	Tcr_0063	-	putative monovalent cation/H+ antiporter subunit A
64	 41.45	0	77383..79143	+	586	78484410	-	Tcr_0064	-	Na+/Pi-cotransporter
65	 41.67	0	79637..80056	-	139	78484411	-	Tcr_0065	-	hypothetical protein
66	 40.03	-1	80217..82382	+	721	78484412	-	Tcr_0066	-	periplasmic sensor hybrid histidine kinase
67	 44.59	0	82491..84542	+	683	78484413	-	Tcr_0067	-	oligopeptidase A
68	 43.70	0	84682..85935	+	417	78484414	-	Tcr_0068	-	aromatic hydrocarbon degradation protein
69	 42.25	0	85957..87246	+	429	78484415	-	Tcr_0069	-	major facilitator transporter
70	 44.48	0	87297..89450	+	717	78484416	-	Tcr_0070	-	AMP-dependent synthetase and ligase
71	 45.03	0	89481..91181	-	566	78484417	-	Tcr_0071	-	hypothetical protein
72	 45.81	0	91213..93207	-	664	78484418	-	Tcr_0072	-	TPR repeat-containing protein
73	 46.29	0	93207..94256	-	349	78484419	-	Tcr_0073	-	von Willebrand factor, type A
74	 46.25	0	94253..94732	-	159	78484420	-	Tcr_0074	-	hypothetical protein
75	 45.46	0	94732..95646	-	304	78484421	-	Tcr_0075	-	hypothetical protein
76	 47.43	+1	95671..96642	-	323	78484422	-	Tcr_0076	-	ATPase
77	 45.15	0	96811..99636	-	941	78484423	-	Tcr_0077	-	methyl-accepting chemotaxis sensory transducer
78	 46.25	0	99789..100787	-	332	78484424	-	Tcr_0078	-	methyltransferase, putative
79	 46.16	0	100812..101567	-	251	78484425	-	Tcr_0079	-	methyltransferase
80	 46.91	+1	101684..102817	-	377	78484426	-	Tcr_0080	-	lytic transglycosylase, catalytic
81	 46.15	0	102827..103723	-	298	78484427	-	Tcr_0081	-	DNA/RNA non-specific endonuclease
82	 34.30	-2	104344..108048	-	1234	78484428	-	Tcr_0083	-	hypothetical protein
83	 40.51	0	108554..109333	+	259	78484429	-	Tcr_0084	-	SmtA protein
84	 37.06	-1	110457..110885	-	142	78484430	-	Tcr_0085	-	hypothetical protein
85	 37.44	-1	110878..113217	-	779	78484431	-	Tcr_0086	-	hypothetical protein
86	 36.15	-2	113207..114802	-	531	78484432	-	Tcr_0087	-	hypothetical protein
87	 37.38	-1	114789..116072	-	427	78484433	-	Tcr_0088	-	Phage integrase
88	 45.50	0	116229..116828	-	199	78484434	-	Tcr_0089	-	SmtA protein
89	 41.73	0	117029..118291	+	420	78484435	-	Tcr_0090	-	diguanylate cyclase
90	 44.19	0	118336..119247	-	303	78484436	-	Tcr_0091	-	hypothetical protein
91	 44.14	0	119284..119838	-	184	78484437	-	Tcr_0092	-	rhodanese-like protein
92	 44.49	0	119967..120701	-	244	78484438	-	Tcr_0093	-	Beta-lactamase-like
93	 47.22	+1	120804..122063	+	419	78484439	-	Tcr_0094	-	major facilitator transporter
94	 47.58	+1	122219..123208	+	329	78484440	-	Tcr_0095	-	ATPase
95	 47.68	+1	123215..124225	+	336	78484441	-	Tcr_0096	-	hypothetical protein
96	 42.94	0	124212..124742	+	176	78484442	-	Tcr_0097	-	hypothetical protein
97	 45.24	0	124742..125833	+	363	78484443	-	Tcr_0098	-	von Willebrand factor, type A
98	 47.34	+1	125830..127785	+	651	78484444	-	Tcr_0099	-	von Willebrand factor, type A
99	 43.96	0	127779..129284	+	501	78484445	-	Tcr_0100	-	hypothetical protein
100	 40.24	0	129270..129515	-	81	78484446	-	Tcr_0101	-	hypothetical protein
43.52	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.