IslandPath Analysis: Prochlorococcus marinus subsp. pastoris str. CCMP1986



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.44   STD DEV: 4.23
Prochlorococcus marinus subsp. pastoris str. CCMP1986, complete genome - 1..1657990
1717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.27	0	174..1331	+	385	33860561	dnaN	PMM0001	-	DNA polymerase III subunit beta
2	 27.82	0	1333..2040	+	235	33860562	-	PMM0002	-	hypothetical protein
3	 32.35	0	2044..4383	+	779	33860563	purL	PMM0003	-	phosphoribosylformylglycinamidine synthase II
4	 32.10	0	4430..5890	+	486	33860564	purF	PMM0004	-	amidophosphoribosyltransferase
5	 28.21	0	5887..8328	-	813	33860565	-	PMM0005	-	DNA gyrase/topoisomerase IV, subunit A
6	 24.68	-1	8416..9270	-	284	33860566	-	PMM0006	-	hypothetical protein
7	 30.90	0	9275..10219	-	314	33860567	-	PMM0007	-	hypothetical protein
8	 32.79	0	10367..11104	+	245	33860568	-	PMM0008	-	hypothetical protein
9	 29.84	0	11105..11734	+	209	33860569	nusB	PMM0009	-	transcription antitermination protein NusB
10	 32.88	0	11793..13115	+	440	33860570	ftsY	PMM0010	-	signal recognition particle docking protein FtsY
11	 27.98	0	13183..14526	+	447	33860571	-	PMM0011	-	protein phosphatase 2C domain-containing protein
12	 31.52	0	14585..15964	+	459	33860572	argH	PMM0012	-	argininosuccinate lyase
13	 46.10	+2	16018..16683	+	221	33860573	-	PMM0013	-	RNA recognition motif-containing protein
14	 31.34	0	16680..17684	-	334	33860574	-	PMM0014	-	tRNA-dihydrouridine synthase A
15	 34.34	0	17712..18206	+	164	33860575	-	PMM0015	-	hypothetical protein
16	 32.92	0	18283..19002	+	239	33860576	grpE	PMM0016	-	heat shock protein GrpE
17	 37.96	+1	19034..20158	+	374	33860577	dnaJ	PMM0017	-	DnaJ protein
18	 26.50	-1	20155..20388	+	77	33860578	-	PMM0018	-	hypothetical protein
19	 28.43	0	20378..21295	+	305	33860579	-	PMM0019	-	hypothetical protein
20	 32.19	0	21261..21611	-	116	33860580	-	PMM0020	-	hypothetical protein
21	 29.41	0	21634..22524	-	296	33860581	murB	PMM0021	-	UDP-N-acetylenolpyruvoylglucosamine reductase
22	 26.30	-1	22532..23953	-	473	33860582	murC	PMM0022	-	UDP-N-acetylmuramate-alanine ligase
23	 36.46	+1	24150..25172	+	340	33860583	gap2	PMM0023	-	glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating)
24	 29.99	0	25173..26159	-	328	33860584	thiL	PMM0024	-	putative thiamine-monophosphate kinase
25	 33.52	0	26152..27243	-	363	33860585	-	PMM0025	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
26	 36.72	+1	27287..27847	+	186	33860586	efp	PMM0026	-	elongation factor P
27	 35.11	0	27847..28353	+	168	33860587	accB,fabE	PMM0027	-	biotin / lipoyl attachment:Acetyl-CoA biotin carboxyl carrier subunit
28	 31.60	0	28330..29370	-	346	33860588	pdxA	PMM0028	-	4-hydroxythreonine-4-phosphate dehydrogenase
29	 29.84	0	29363..30250	-	295	33860589	-	PMM0029	-	hypothetical protein
30	 23.02	-1	30235..30525	+	96	33860590	-	PMM0030	-	transcription factor TFIID (or TATA-b
31	 34.57	0	30526..30930	-	134	33860591	-	PMM0031	-	HNH endonuclease:HNH nuclease
32	 34.29	0	31101..31520	-	139	33860592	-	PMM0032	-	type II secretion system pr
33	 38.21	+1	31579..32091	-	170	33860593	-	PMM0033	-	hypothetical protein
34	 33.84	0	32335..32532	+	65	33860594	-	PMM0034	-	hypothetical protein
35	 32.38	0	32543..33697	-	384	33860595	DHSS	PMM0035	-	soluble hydrogenase small subunit
36	 28.87	0	33758..34876	+	372	33860596	cbiD	PMM0036	-	cobalt-precorrin-6A synthase
37	 33.33	0	34925..36511	+	528	33860597	guaA	PMM0037	-	bifunctional GMP synthase/glutamine amidotransferase protein
38	 27.17	-1	36556..37269	+	237	33860598	-	PMM0038	-	hypothetical protein
39	 33.00	0	37360..37968	+	202	33860599	-	PMM0039	-	hypothetical protein
40	 31.55	0	38231..40021	+	596	33860600	-	PMM0040	-	putative penicillin-binding protein
41	 29.33	0	40052..40576	-	174	33860601	-	PMM0041	-	putative reductase
42	 32.00	0	40595..42397	-	600	33860602	-	PMM0042	-	flavoprotein
43	 34.12	0	42415..44190	-	591	33860603	-	PMM0043	-	flavoprotein
44	 32.88	0	44305..46965	+	886	33860604	alaS	PMM0044	-	alanyl-tRNA synthetase
45	 29.94	0	46950..48896	-	648	33860605	-	PMM0045	-	arginine decarboxylase
46	 35.95	+1	49017..49475	+	152	33860606	-	PMM0046	-	nucleoside diphosphate kinase
47	 32.88	0	49482..50591	-	369	33860607	thiO	PMM0047	-	putative thiamine biosynthesis oxidoreductase
48	 34.35	0	50672..52144	+	490	33860608	gatB	PMM0048	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
49	 26.50	-1	52148..52762	-	204	33860609	coaE	PMM0049	-	putative dephospho-CoA kinase
50	 32.51	0	52867..54075	+	402	33860610	argJ	PMM0050	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
51	 39.58	+1	54244..54915	-	223	33860611	-	PMM0051	-	hypothetical protein
52	 29.28	0	55066..56028	+	320	33860612	-	PMM0052	-	aldo/keto reductase
53	 29.60	0	56663..57787	+	374	33860613	-	PMM0053	-	putative RNA methylase
54	 30.75	0	57789..58175	-	128	33860614	-	PMM0054	-	hypothetical protein
55	 31.17	0	58176..58637	-	153	33860615	-	PMM0055	-	hypothetical protein
56	 27.55	0	59051..59413	+	120	33860616	-	PMM0056	-	hypothetical protein
57	 30.49	0	59496..63080	+	1194	33860617	-	PMM0057	-	SMC ATPase superfamily chromosome segregation protein
58	 36.58	+1	63132..64148	+	338	33860618	-	PMM0058	-	hypothetical protein
59	 28.99	0	64160..65449	-	429	33860619	-	PMM0059	-	hypothetical protein
60	 37.04	+1	65841..67190	+	449	33860620	accC	PMM0060	-	acetyl-CoA carboxylase biotin carboxylase subunit
61	 29.74	0	67208..67513	-	101	33860621	-	PMM0061	-	hypothetical protein
62	 42.55	+2	67652..67792	+	46	33860622	psbX	PMM0062	-	photosystem II PsbX protein
63	 36.12	+1	67870..68802	+	310	33860623	-	PMM0063	-	hypothetical protein
64	 26.92	-1	68803..69036	-	77	33860624	hli2	PMM0064	-	high light inducible protein
65	 31.97	0	69046..71028	-	660	33860625	-	PMM0065	-	ABC transporter, ATP binding protein
66	 27.43	0	71066..71353	-	95	33860626	-	PMM0066	-	hypothetical protein
67	 32.75	0	71401..71742	-	113	33860627	-	PMM0067	-	HIT (histidine triad) family protein
68	 32.18	0	71763..72368	-	201	33860628	def	PMM0068	-	peptide deformylase
69	 28.62	0	72448..74376	+	642	33860629	-	PMM0069	-	esterase/lipase/thioesterase family protein
70	 30.44	0	74373..75650	-	425	33860630	-	PMM0070	-	putative cysteine desulfurase or selenocysteine lyase
71	 27.26	0	75650..76867	-	405	33860631	-	PMM0071	-	ABC transporter, membrane component
72	 32.19	0	76872..77657	-	261	33860632	-	PMM0072	-	ABC transporter, ATP binding component
73	 35.27	0	77679..79121	-	480	33860633	-	PMM0073	-	cysteine desulfurase activator complex subunit SufB
74	 28.37	0	79219..79581	+	120	33860634	-	PMM0074	-	hypothetical protein
75	 34.78	0	79845..80951	+	368	33860635	-	PMM0075	-	hypothetical protein
76	 31.50	0	81171..82808	+	545	33860636	pgm	PMM0076	-	phosphoglucomutase
77	 31.86	0	82844..84133	+	429	33860637	yrvN	PMM0077	-	recombination factor protein RarA
78	 29.53	0	84130..84786	-	218	33860638	-	PMM0078	-	putative 4'-phosphopantetheinyl transferase family protein
79	 29.06	0	84786..85253	+	155	33860639	bcp	PMM0079	-	putative bacterioferritin comigratory (BCP) protein
80	 32.16	0	85259..85939	-	226	33860640	-	PMM0080	-	hypothetical protein
81	 31.95	0	85958..86680	-	240	33860641	cysH	PMM0081	-	phosphoadenosine phosphosulfate reductase
82	 29.11	0	86776..87960	+	394	33860642	-	PMM0082	-	putative NADH dehydrogenase, transport associated
83	 34.33	0	88020..89828	+	602	33860643	-	PMM0083	-	DASS family sodium/sulfate transporter
84	 30.98	0	89838..91241	+	467	33860644	-	PMM0084	-	Trk family sodium transporter
85	 34.75	0	91260..91964	+	234	33860645	-	PMM0085	-	VIC family potassium channel protein
86	 35.60	0	91965..92273	-	102	33860646	-	PMM0086	-	hypothetical protein
87	 30.68	0	92390..92728	+	112	33860647	-	PMM0087	-	hypothetical protein
88	 32.90	0	92764..92994	+	76	33860648	-	PMM0088	-	hypothetical protein
89	 29.57	0	93215..94837	+	540	33860649	-	PMM0089	-	ABC transporter, ATP binding component
90	 30.29	0	95155..96303	-	382	33860650	-	PMM0090	-	serine protease
91	 30.68	0	96452..96715	+	87	33860651	-	PMM0091	-	hypothetical protein
92	 38.78	+1	96820..97131	+	103	33860652	-	PMM0092	-	hypothetical protein
93	 34.69	0	97200..97346	+	48	33860653	hli1	PMM0093	-	high light inducible protein
94	 25.38	-1	97375..97701	-	108	33860654	-	PMM0094	-	hypothetical protein
95	 34.52	0	97734..98660	-	308	33860655	-	PMM0095	-	serum resistance locus BrkB-like protein
96	 32.83	0	98735..99532	-	265	33860656	-	PMM0096	-	inositol monophosphate family protein
97	 26.35	-1	99535..100965	-	476	33860657	-	PMM0097	-	RND family outer membrane efflux protein
98	 29.58	0	100958..102370	-	470	33860658	-	PMM0098	-	putative Fe-S oxidoreductase
99	 32.81	0	102557..103324	+	255	33860659	-	PMM0099	-	hypothetical protein
100	 34.89	0	103324..104991	+	555	33860660	nadB	PMM0100	-	L-aspartate oxidase
31.44	MEAN

4.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.