IslandPath Analysis: Neisseria gonorrhoeae NCCP11945



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 6.98
Neisseria gonorrhoeae NCCP11945, complete genome - 1..2232025
2662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.53	0	206..1714	+	502	194097590	-	NGK_0001	-	putative chromosomal replication protein (DnaA)
2	 58.49	0	1794..2417	+	207	194097591	-	NGK_0002	-	DNA polymerase III subunit beta
3	 53.17	0	2393..2896	+	167	194097592	-	NGK_0003	-	DNA polymerase III subunit beta
4	 59.65	+1	3045..5252	-	735	194097593	-	NGK_0004	-	polyphosphate kinase
5	 56.08	0	5271..5714	-	147	194097594	-	NGK_0005	-	Periplasmic protein
6	 56.36	0	5721..6050	-	109	194097595	-	NGK_0006	-	lipoprotein
7	 52.30	0	6064..6237	-	57	194097596	-	NGK_0007	-	lipoprotein
8	 45.41	0	6234..6440	-	68	194097597	-	NGK_0008	-	hypothetical protein
9	 57.05	0	6504..9134	+	876	194097598	-	NGK_0009	-	leucyl-tRNA synthetase
10	 41.54	-1	9363..10154	+	263	194097599	-	NGK_0010	-	dam-replacing protein
11	 33.33	-2	10151..10291	+	46	194097600	-	NGK_0011	-	putative type II restriction endonuclease
12	 38.56	-1	10284..10436	+	50	194097601	-	NGK_0012	-	Putative Modification methylase DpnIIB
13	 41.96	-1	10433..10768	+	111	194097602	-	NGK_0013	-	putative modification methylase
14	 39.78	-1	10814..11092	+	92	194097603	-	NGK_0014	-	putative modification methylase
15	 32.81	-2	11164..11544	+	126	194097604	-	NGK_0015	-	hypothetical protein
16	 63.38	+1	12094..12306	-	70	194097605	-	NGK_0016	-	hypothetical protein
17	 53.21	0	12416..12727	-	103	194097606	-	NGK_0017	-	Helix-turn-helix family protein
18	 48.15	0	12724..12966	-	80	194097607	-	NGK_0018	-	hypothetical protein
19	 47.29	0	12963..13091	-	42	194097608	-	NGK_0019	-	hypothetical protein
20	 38.95	-1	13340..13624	+	94	194097609	-	NGK_0020	-	hypothetical protein
21	 45.00	0	13787..13906	+	39	194097610	-	NGK_0021	-	hypothetical protein
22	 52.42	0	14080..14430	-	116	194097611	-	NGK_0022	-	putative protein-export protein
23	 56.08	0	14437..15192	-	251	194097612	-	NGK_0023	-	triosephosphate isomerase
24	 53.33	0	15274..15393	+	39	194097613	-	NGK_0024	-	hypothetical protein
25	 56.59	0	15381..15896	+	171	194097614	-	NGK_0025	-	hypothetical protein
26	 53.73	0	15999..16655	+	218	194097615	-	NGK_0026	-	Protein-L-isoaspartate O-methyltransferase
27	 55.11	0	16688..17059	+	123	194097616	-	NGK_0027	-	hypothetical protein
28	 62.15	+1	17322..19049	-	575	194097618	-	NGK_0029	-	TonB-dependent receptor
29	 64.81	+1	19119..19334	+	71	194097617	-	NGK_0028	-	hypothetical protein
30	 60.19	+1	19752..20075	-	107	194097619	-	NGK_0030	-	hypothetical protein
31	 61.83	+1	20108..21079	-	323	194097621	-	NGK_0032	-	Ferric enterobactin transporter binding protein
32	 42.06	-1	21083..21208	+	41	194097620	-	NGK_0031	-	hypothetical protein
33	 61.55	+1	21315..22271	+	318	194097622	-	NGK_0033	-	putative AraC-family transcriptional regulator
34	 57.69	0	22384..24399	-	671	194097623	-	NGK_0034	-	putative prolyl endopeptidase
35	 63.01	+1	24495..25805	-	436	194097624	-	NGK_0035	-	N-acetylglutamate synthase
36	 56.18	0	25802..26230	-	142	194097625	-	NGK_0036	-	hypothetical protein
37	 55.92	0	26304..26945	-	213	194097626	-	NGK_0037	-	orotate phosphoribosyltransferase
38	 63.41	+1	27007..27744	-	245	194097627	-	NGK_0038	-	hypothetical protein
39	 60.32	+1	27738..28178	-	146	194097628	-	NGK_0039	-	putative acetyltransferase
40	 62.24	+1	28175..28852	-	225	194097629	-	NGK_0040	-	hypothetical protein
41	 54.69	0	28991..29800	-	269	194097630	-	NGK_0041	-	hypothetical protein
42	 55.79	0	29987..31126	-	379	194097631	-	NGK_0042	-	fructose-bisphosphate aldolase
43	 62.09	+1	31245..32162	+	305	194097632	-	NGK_0043	-	putative site-specific recombinase
44	 59.25	+1	32247..34160	+	637	194097633	-	NGK_0044	-	1-deoxy-D-xylulose-5-phosphate synthase
45	 59.77	+1	34228..34401	+	57	194097634	-	NGK_0045	-	hypothetical protein
46	 56.21	0	34407..35735	-	442	194097636	-	NGK_0047	-	Bifunctional enzyme involved in thiolation and methylation of tRNA
47	 45.58	0	35739..35885	+	48	194097635	-	NGK_0046	-	hypothetical protein
48	 51.23	0	35932..36093	+	53	194097637	-	NGK_0048	-	hypothetical protein
49	 49.38	0	36335..36496	-	53	194097638	-	NGK_0049	-	hypothetical protein
50	 58.86	+1	36509..37789	+	426	194097639	-	NGK_0050	-	glutamate-1-semialdehyde aminotransferase
51	 43.41	-1	37888..38016	-	42	194097640	-	NGK_0051	-	hypothetical protein
52	 52.86	0	38013..38606	-	197	194100148	-	NGK_0052	-	hypothetical protein
53	 43.33	-1	38716..38835	-	39	194100149	-	NGK_0053	-	hypothetical protein
54	 53.72	0	39095..39658	-	187	194097641	-	NGK_0054	-	oligoribonuclease
55	 60.36	+1	39676..40611	-	311	194097642	-	NGK_0055	-	ribosomal protein L11 methyltransferase
56	 58.52	0	40667..42028	-	453	194097643	-	NGK_0056	-	acetyl-CoA carboxylase, biotin carboxylase
57	 58.87	+1	42142..42603	-	153	194097644	-	NGK_0057	-	acetyl-CoA carboxylase
58	 48.06	0	42585..42842	-	85	194097645	-	NGK_0058	-	hypothetical protein
59	 57.14	0	42929..43999	+	356	194097646	-	NGK_0059	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
60	 50.83	0	43996..44115	-	39	194097647	-	NGK_0060	-	hypothetical protein
61	 57.89	0	44200..46626	-	808	194097648	-	NGK_0061	-	carbamoyl phosphate synthase large subunit
62	 55.47	0	46647..47414	-	255	194097649	-	NGK_0062	-	carbamoyl phosphate synthase large subunit
63	 29.82	-2	47421..47762	-	113	194097650	-	NGK_0063	-	hypothetical protein
64	 38.78	-1	48692..48838	-	48	194097651	-	NGK_0064	-	hypothetical protein
65	 54.10	0	49716..50105	-	129	194097652	-	NGK_0065	-	hypothetical protein
66	 52.38	0	50268..50435	-	55	194097653	-	NGK_0066	-	30S ribosomal protein S15
67	 56.42	0	50701..51900	-	399	194097654	-	NGK_0067	-	carbamoyl-phosphate synthase small subunit
68	 60.68	+1	52010..52126	-	38	194097655	-	NGK_0068	-	hypothetical protein
69	 42.56	-1	52226..52420	+	64	194097656	-	NGK_0069	-	hypothetical protein
70	 39.46	-1	52549..52695	-	48	194100150	-	NGK_0070	-	hypothetical protein
71	 42.94	-1	52999..53175	+	58	194097657	-	NGK_0071	-	hypothetical protein
72	 42.68	-1	53156..53401	+	81	194097658	-	NGK_0072	-	hypothetical protein
73	 57.89	0	53597..53710	+	37	194097659	-	NGK_0073	-	hypothetical protein
74	 51.61	0	53684..56851	-	1055	194097660	-	NGK_0074	-	PilC2
75	 60.61	+1	56951..57115	+	54	194097661	-	NGK_0075	-	hypothetical protein
76	 52.73	0	57454..57618	-	54	194100151	-	NGK_0076	-	hypothetical protein
77	 50.91	0	57734..57898	-	54	194097662	-	NGK_0077	-	hypothetical protein
78	 51.24	0	58287..58487	+	66	194097663	-	NGK_0078	-	hypothetical protein
79	 60.37	+1	59171..60250	-	359	194097664	-	NGK_0079	-	putative atpase
80	 57.25	0	60624..61133	+	169	194097665	-	NGK_0080	-	putative thioredoxin
81	 46.49	0	61181..61294	+	37	194097666	-	NGK_0081	-	hypothetical protein
82	 51.70	0	61474..61914	+	146	194097667	-	NGK_0082	-	putative marR-family transcriptional regulator
83	 55.09	0	62029..62529	+	166	194097668	-	NGK_0083	-	putative flavoprotein oxidoreductase
84	 60.63	+1	62545..63240	+	231	194097669	-	NGK_0084	-	putative sugar-phosphate transferase
85	 58.39	0	63294..63704	-	136	194097670	-	NGK_0085	-	Integral membrane protein
86	 56.47	0	63879..65555	+	558	194097671	-	NGK_0086	-	putative formate--tetrahydrofolate ligase
87	 56.68	0	65669..66760	+	363	194097672	-	NGK_0087	-	putative GTP-binding protein
88	 53.01	0	66789..67037	+	82	194097673	-	NGK_0088	-	hypothetical protein
89	 54.15	0	67034..68032	+	332	194097674	-	NGK_0089	-	putative lipo-oligosaccharide acyltransferase
90	 54.93	0	68109..68909	+	266	194097675	-	NGK_0090	-	putative lipo-oligosaccharide acyltransferase
91	 57.10	0	68971..70266	+	431	194097676	-	NGK_0091	-	putative tyrosyl-tRNA synthase
92	 48.63	0	70272..70454	+	60	194097677	-	NGK_0092	-	truncated pilin
93	 47.53	0	70550..70711	-	53	194097678	-	NGK_0093	-	hypothetical protein
94	 50.00	0	70729..70866	+	45	194097679	-	NGK_0094	-	hypothetical protein
95	 55.97	0	70941..71099	+	52	194097680	-	NGK_0095	-	hypothetical protein
96	 52.78	0	71073..71756	-	227	194097681	-	NGK_0096	-	outer membrane protein
97	 54.55	0	71862..72059	-	65	194097682	-	NGK_0097	-	sugar ABC transporter, ATP-binding protein
98	 57.26	0	72087..73043	+	318	194097683	-	NGK_0098	-	Riboflavin kinase/FMN adenylyltransferase
99	 43.86	-1	73068..73181	+	37	194097684	-	NGK_0099	-	hypothetical protein
100	 55.20	0	73185..75974	+	929	194097685	-	NGK_0100	-	isoleucyl-tRNA synthetase
51.65	MEAN

6.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.