IslandPath Analysis: Escherichia coli SE11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.67   STD DEV: 5.36
Escherichia coli SE11, complete genome - 1..4887515
4679 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.52	0	190..255	+	21	209917192	-	ECSE_0001	-	thr operon leader peptide
2	 53.31	0	336..2798	+	820	209917193	-	ECSE_0002	-	aspartokinase I
3	 56.48	+1	2800..3732	+	310	209917194	-	ECSE_0003	-	homoserine kinase
4	 53.15	0	3733..5019	+	428	209917195	-	ECSE_0004	-	threonine synthase
5	 54.21	0	5233..5529	+	98	209917196	-	ECSE_0005	-	hypothetical protein
6	 49.16	0	5682..6458	-	258	209917197	-	ECSE_0006	-	hypothetical protein
7	 53.04	0	6528..7958	-	476	209917198	-	ECSE_0007	-	putative transport protein
8	 51.26	0	8237..9190	+	317	209917199	-	ECSE_0008	-	transaldolase B
9	 53.91	0	9305..9892	+	195	209917200	-	ECSE_0009	-	molybdopterin biosynthesis protein
10	 53.09	0	9927..10493	-	188	209917201	-	ECSE_0010	-	hypothetical protein
11	 50.98	0	10642..11355	-	237	209917202	-	ECSE_0011	-	hypothetical protein
12	 47.65	0	11381..11785	-	134	209917203	-	ECSE_0012	-	hypothetical protein
13	 51.23	0	12162..14078	+	638	209917204	-	ECSE_0013	-	chaperone protein DnaK
14	 54.91	0	14167..15297	+	376	209917205	-	ECSE_0014	-	chaperone protein DnaJ
15	 51.43	0	15401..15610	-	69	209917206	-	ECSE_0015	-	phage maintenance protein
16	 51.33	0	16139..17305	+	388	209917207	-	ECSE_0016	-	sodium-proton antiporter protein
17	 47.44	0	17371..18270	+	299	209917208	-	ECSE_0017	-	transcriptional activator
18	 39.20	-2	18309..18734	-	141	209917209	-	ECSE_0018	-	hypothetical protein
19	 39.53	-2	19279..20424	-	381	209917210	-	ECSE_0019	-	hypothetical protein
20	 30.52	-2	20857..22278	-	473	209917211	-	ECSE_0020	-	hypothetical protein
21	 46.59	0	22762..23025	-	87	209917212	-	ECSE_0021	-	30S ribosomal protein S20
22	 48.86	0	23128..23346	+	72	209917213	-	ECSE_0022	-	hypothetical protein
23	 53.40	0	23354..24295	+	313	209917214	-	ECSE_0023	-	flavokinase and FAD synthase
24	 55.63	0	24338..27154	+	938	209917215	-	ECSE_0024	-	isoleucyl-tRNA synthase
25	 52.93	0	27154..27648	+	164	209917216	-	ECSE_0025	-	prolipoprotein signal peptidase
26	 54.89	0	27736..28185	+	149	209917217	-	ECSE_0026	-	peptidyl-prolyl cis-trans isomerase
27	 54.99	0	28187..29137	+	316	209917218	-	ECSE_0027	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
28	 56.50	+1	29203..30117	+	304	209917219	-	ECSE_0028	-	putative nucleoside hydrolase
29	 54.26	0	30284..31105	+	273	209917220	-	ECSE_0029	-	dihydrodipicolinate reductase
30	 28.57	-2	31147..31314	-	55	209917221	-	ECSE_0030	-	hypothetical protein
31	 39.13	-2	31384..31521	+	45	209917222	-	ECSE_0031	-	hypothetical protein
32	 53.32	0	31534..32709	+	391	209917223	-	ECSE_0032	-	carbamoyl-phosphate synthase small subunit
33	 56.27	+1	32727..35948	+	1073	209917224	-	ECSE_0033	-	carbamoyl-phosphate synthase large subunit
34	 35.62	-2	35956..36174	-	72	209917225	-	ECSE_0034	-	hypothetical protein
35	 46.72	0	36209..36604	+	131	209917226	-	ECSE_0035	-	transcriptional regulator
36	 54.90	0	36690..37301	-	203	209917227	-	ECSE_0036	-	carnitine operon protein
37	 52.91	0	37286..38179	-	297	209917228	-	ECSE_0037	-	carnitine racemase
38	 50.99	0	38180..39748	-	522	209917229	-	ECSE_0038	-	putative crotonobetaine/carnitine-CoA ligase
39	 52.55	0	39807..41024	-	405	209917230	-	ECSE_0039	-	L-carnitine dehydratase
40	 54.16	0	41153..42295	-	380	209917231	-	ECSE_0040	-	putative carnitine operon oxidoreductase
41	 52.01	0	42326..43840	-	504	209917232	-	ECSE_0041	-	putative carnitine transporter
42	 52.40	0	44314..45084	+	256	209917233	-	ECSE_0042	-	flavoprotein FixA
43	 56.26	+1	45099..46040	+	313	209917234	-	ECSE_0043	-	flavoprotein FixB
44	 54.86	0	46091..47377	+	428	209917235	-	ECSE_0044	-	flavoprotein FixC
45	 56.60	+1	47374..47661	+	95	209917236	-	ECSE_0045	-	putative ferredoxin
46	 53.60	0	47719..49050	+	443	209917237	-	ECSE_0046	-	putative transport protein
47	 54.99	0	49158..49688	+	176	209917238	-	ECSE_0047	-	putative NAD(P)H oxidoreductase
48	 55.45	0	49681..51543	+	620	209917239	-	ECSE_0048	-	potassium efflux antiporter protein
49	 53.54	0	51735..52214	+	159	209917240	-	ECSE_0049	-	dihydrofolate reductase
50	 55.40	0	52292..53134	-	280	209917241	-	ECSE_0050	-	diadenosine tetraphosphatase
51	 51.85	0	53141..53518	-	125	209917242	-	ECSE_0051	-	hypothetical protein
52	 53.16	0	53521..54342	-	273	209917243	-	ECSE_0052	-	S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
53	 56.06	+1	54339..55328	-	329	209917244	-	ECSE_0053	-	4-hydroxythreonine-4-phosphate dehydrogenase
54	 53.61	0	55328..56614	-	428	209917245	-	ECSE_0054	-	peptidyl-prolyl cis-trans isomerase
55	 51.38	0	56667..59021	-	784	209917246	-	ECSE_0055	-	organic solvent tolerance protein
56	 52.82	0	59276..60091	+	271	209917247	-	ECSE_0056	-	putative DNA binding protein
57	 55.05	0	60211..61191	-	326	209917248	-	ECSE_0057	-	transposase
58	 54.39	0	61487..62146	-	219	209917249	-	ECSE_0058	-	ribosomal large subunit pseudouridine synthase A
59	 54.80	0	62158..65064	-	968	209917250	-	ECSE_0059	-	RNA helicase
60	 55.27	0	65229..67580	-	783	209917251	-	ECSE_0060	-	DNA polymerase II
61	 55.03	0	67655..68350	-	231	209917252	-	ECSE_0061	-	L-ribulose-5-phosphate 4-epimerase
62	 55.29	0	68519..70021	-	500	209917253	-	ECSE_0062	-	L-arabinose isomerase
63	 58.32	+1	70032..71732	-	566	209917254	-	ECSE_0063	-	L-ribulokinase
64	 52.56	0	72071..72949	+	292	209917255	-	ECSE_0064	-	transcriptional regulator
65	 54.77	0	73035..73799	+	254	209917256	-	ECSE_0065	-	hypothetical protein
66	 57.65	+1	73913..74611	-	232	209917257	-	ECSE_0066	-	thiamin ABC transporter ATP-binding component
67	 58.41	+1	74595..76205	-	536	209917258	-	ECSE_0067	-	thiamin ABC transporter permease component
68	 52.95	0	76181..77164	-	327	209917259	-	ECSE_0068	-	thiamin ABC transporter substrate binding component
69	 55.07	0	77328..78983	-	551	209917260	-	ECSE_0069	-	putative transport protein
70	 48.52	0	79305..80483	+	392	209917261	-	ECSE_0070	-	putative transport protein
71	 51.82	0	80532..81137	-	201	209917262	-	ECSE_0071	-	3-isopropylmalate dehydratase small subunit
72	 55.39	0	81148..82548	-	466	209917263	-	ECSE_0072	-	3-isopropylmalate dehydratase large subunit
73	 54.85	0	82551..83642	-	363	209917264	-	ECSE_0073	-	3-isopropylmalate dehydrogenase
74	 52.93	0	83642..85213	-	523	209917265	-	ECSE_0074	-	2-isopropylmalate synthase
75	 47.13	0	85306..85392	-	28	209917266	-	ECSE_0075	-	leu operon leader peptide
76	 31.71	-2	85853..85975	+	40	209917267	-	ECSE_0076	-	hypothetical protein
77	 45.93	0	86052..86996	+	314	209917268	-	ECSE_0077	-	putative transcriptional regulator
78	 37.30	-2	87129..87254	+	41	209917269	-	ECSE_0078	-	hypothetical protein
79	 52.93	0	87314..89038	+	574	209917270	-	ECSE_0079	-	acetolactate synthase III large subunit
80	 50.41	0	89041..89532	+	163	209917271	-	ECSE_0080	-	acetolactate synthase III small subunit
81	 39.39	-2	89584..89715	+	43	209917272	-	ECSE_0081	-	hypothetical protein
82	 54.83	0	89712..90716	+	334	209917273	-	ECSE_0082	-	transcriptional regulator
83	 52.51	0	91318..91776	+	152	209917274	-	ECSE_0083	-	hypothetical protein
84	 55.41	0	91778..92719	+	313	209917275	-	ECSE_0084	-	S-adenosyl-methyltransferase
85	 50.27	0	92716..93081	+	121	209917276	-	ECSE_0085	-	cell division protein FtsL
86	 53.99	0	93097..94863	+	588	209917277	-	ECSE_0086	-	penicillin-binding protein 3
87	 56.72	+1	94850..96337	+	495	209917278	-	ECSE_0087	-	UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
88	 55.19	0	96334..97692	+	452	209917279	-	ECSE_0088	-	D-alanine:D-alanine-adding enzyme
89	 53.28	0	97686..98768	+	360	209917280	-	ECSE_0089	-	phospho-N-acetylmuramoyl-pentapeptide transferase
90	 55.35	0	98771..100087	+	438	209917281	-	ECSE_0090	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
91	 53.09	0	100087..101331	+	414	209917282	-	ECSE_0091	-	cell division protein FtsW
92	 56.18	+1	101328..102395	+	355	209917283	-	ECSE_0092	-	UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
93	 54.13	0	102449..103924	+	491	209917284	-	ECSE_0093	-	UDP-N-acetylmuramate:alanine ligase
94	 52.23	0	103917..104837	+	306	209917285	-	ECSE_0094	-	D-alanine-D-alanine ligase B
95	 53.55	0	104839..105669	+	276	209917286	-	ECSE_0095	-	cell division protein FtsQ
96	 52.18	0	105666..106928	+	420	209917287	-	ECSE_0096	-	cell division protein FtsA
97	 54.08	0	106989..108140	+	383	209917288	-	ECSE_0097	-	cell division protein FtsZ
98	 50.98	0	108241..109158	+	305	209917289	-	ECSE_0098	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
99	 52.55	0	109314..109901	+	195	209917290	-	ECSE_0099	-	secretion monitor precursor
100	 52.48	0	109963..112668	+	901	209917291	-	ECSE_0100	-	preprotein translocase SecA
50.67	MEAN

5.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.