IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.48   STD DEV: 3.51
Aliivibrio salmonicida LFI1238 chromosome 2, complete genome - 1..1206461
984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.26	0	1084..3069	+	661	209808848	rctB	VSAL_II0001	-	oriCII binding protein RctB
2	 43.97	+1	3426..3773	+	115	209808849	-	VSAL_II0002	-	putative endoribonuclease L-PSP
3	 37.78	0	7378..7692	+	104	209808850	-	VSAL_II0006	-	transposase
4	 35.94	0	7796..8677	+	293	209808851	-	VSAL_II0008	-	transposase
5	 38.38	0	10763..12406	-	547	209808852	-	VSAL_II0010	-	hypothetical protein
6	 39.06	0	12519..14438	-	639	209808853	recQ	VSAL_II0011	-	putative ATP-dependent DNA helicase
7	 39.61	0	14438..14851	-	137	209808854	-	VSAL_II0012	-	putative peptidyl-tRNA hydrolase
8	 39.78	0	14938..15294	+	118	209808855	-	VSAL_II0013	-	hypothetical protein
9	 38.54	0	15463..16461	+	332	209808856	-	VSAL_II0014	-	hypothetical protein
10	 41.73	0	16639..17757	+	372	209808857	-	VSAL_II0015	-	secretion protein, HlyD family
11	 40.55	0	18608..19798	-	396	209808858	-	VSAL_II0017	-	transposase
12	 37.46	0	19931..20536	-	201	209808859	-	VSAL_II0018	-	outer membrane protein OmpA family
13	 39.30	0	20539..21861	-	440	209808860	-	VSAL_II0019	-	outer membrane efflux protein
14	 42.80	+1	22375..31047	+	2890	209808861	-	VSAL_II0020	-	hemolysin-type calcium-binding protein
15	 43.40	+1	31164..31799	+	211	209808862	pdxH	VSAL_II0021	-	pyridoxamine 5'-phosphate oxidase
16	 39.78	0	32123..33610	-	495	209808863	-	VSAL_II0023	-	transposase
17	 36.21	0	33682..34029	-	115	209808864	-	VSAL_II0024	-	transposase
18	 36.55	0	34583..35080	-	165	209808865	-	VSAL_II0026	-	hypothetical protein
19	 37.35	0	35194..36138	-	314	209808866	-	VSAL_II0027	-	protein alx
20	 41.07	0	36529..37692	+	387	209808867	-	VSAL_II0028	-	hypothetical protein
21	 39.72	0	41155..42642	-	495	209808868	-	VSAL_II0031	-	transposase
22	 36.21	0	42714..43061	-	115	209808869	-	VSAL_II0032	-	transposase
23	 37.78	0	43058..43372	-	104	209808870	-	VSAL_II0033	-	transposase
24	 40.00	0	44608..45717	-	369	209808871	-	VSAL_II0034	-	secretion protein, HlyD family
25	 34.15	-1	45894..46502	+	202	209808872	-	VSAL_II0035	-	putative transcriptional regulator, TetR family
26	 39.09	0	46584..47504	-	306	209808873	-	VSAL_II0036	-	membrane protein
27	 39.65	0	47611..50316	-	901	209808874	malT	VSAL_II0037	-	HTH-type transcriptional regulator MalT (maltose regulon positive regulator)
28	 39.85	0	50713..53166	+	817	209808875	malP	VSAL_II0038	-	maltodextrin phosphorylase
29	 40.35	0	53224..55404	+	726	209808876	malQ	VSAL_II0039	-	4-alpha-glucanotransferase
30	 35.94	0	57716..58597	-	293	209808877	-	VSAL_II0041	-	transposase
31	 37.46	0	58697..59011	+	104	209808878	-	VSAL_II0042	-	transposase
32	 36.21	0	59008..59355	+	115	209808879	-	VSAL_II0043	-	transposase
33	 39.72	0	60913..62400	-	495	209808880	-	VSAL_II0046	-	transposase
34	 36.21	0	62472..62819	-	115	209808881	-	VSAL_II0047	-	transposase
35	 37.78	0	62816..63130	-	104	209808882	-	VSAL_II0048	-	transposase
36	 42.44	+1	63564..66209	-	881	209808883	chb	VSAL_II0050	-	N,N'-diacetylchitobiase precursor (chitobiase)
37	 38.72	0	66735..67235	+	166	209808884	-	VSAL_II0051	-	inner membrane protein
38	 36.11	0	67915..68814	-	299	209808885	-	VSAL_II0052	-	response regulator protein
39	 34.51	-1	68853..71309	-	818	209808886	-	VSAL_II0053	-	membrane associated response regulator,histidine kinase
40	 41.72	0	71442..78503	-	2353	209808887	-	VSAL_II0054	-	hypothetical protein
41	 36.19	0	78698..79012	+	104	209808888	-	VSAL_II0055	-	hypothetical protein
42	 37.17	0	79067..80395	+	442	209808889	-	VSAL_II0056	-	putative type I secretion protein, HlyD family
43	 37.47	0	80402..82627	+	741	209808890	-	VSAL_II0057	-	putative membrane associated response regulator
44	 36.47	0	82627..83997	+	456	209808891	-	VSAL_II0058	-	putative type I toxin secretion system, outer membrane efflux protein
45	 37.75	0	83994..85577	+	527	209808892	-	VSAL_II0059	-	putative type I toxin secretion system, membrane transport protein
46	 38.67	0	85578..87731	+	717	209808893	-	VSAL_II0060	-	putative type I toxin secretion system,ATP-binding protein
47	 37.86	0	87782..88576	-	264	209808894	-	VSAL_II0061	-	exported glycosyl hydrolase, family 16
48	 40.67	0	88569..90053	-	494	209808895	-	VSAL_II0062	-	membrane protein
49	 39.92	0	90232..91932	+	566	209808896	-	VSAL_II0063	-	putative type I secretion system, ATP-binding protein
50	 37.75	0	91947..93236	+	429	209808897	-	VSAL_II0064	-	putative type I secretion protein, HlyD family
51	 37.04	0	93246..93488	+	80	209808898	-	VSAL_II0065	-	membrane protein
52	 36.36	0	93524..94282	+	252	209808899	-	VSAL_II0066	-	membrane protein
53	 38.27	0	94418..94579	-	53	209808900	-	VSAL_II0067	-	hypothetical protein
54	 41.67	0	94576..94767	-	63	209808901	-	VSAL_II0068	-	hypothetical protein
55	 39.65	0	94820..96307	-	495	209808902	-	VSAL_II0069	-	transposase
56	 35.92	0	96379..96726	-	115	209808903	-	VSAL_II0070	-	transposase
57	 42.10	+1	97685..99019	-	444	209808904	astB	VSAL_II0073	-	succinylarginine dihydrolase
58	 42.87	+1	99366..100550	+	394	209808905	-	VSAL_II0074	-	membrane protein
59	 39.94	0	100746..101366	-	206	209808906	-	VSAL_II0075	-	hypothetical protein
60	 37.44	0	101509..102360	+	283	209808907	-	VSAL_II0076	-	integral membrane protein
61	 41.72	0	102347..103216	-	289	209808908	-	VSAL_II0077	-	HTH-type transcriptional regulator, AraC-family
62	 41.39	0	103330..104484	+	384	209808909	-	VSAL_II0078	-	putative aminotransferase
63	 44.62	+1	104527..105651	+	374	209808910	-	VSAL_II0079	-	zinc carboxypeptidase
64	 39.72	0	105883..107370	-	495	209808911	-	VSAL_II0080	-	transposase
65	 36.21	0	107442..107789	-	115	209808912	-	VSAL_II0081	-	transposase
66	 41.69	0	108268..109188	-	306	209808913	-	VSAL_II0083	-	putative permease
67	 40.45	0	109326..110519	+	397	209808914	-	VSAL_II0084	-	transposase
68	 39.88	0	110722..110889	+	55	209808915	-	VSAL_II0085	-	hypothetical protein
69	 27.68	-2	110942..111295	+	117	209808916	-	VSAL_II0086	-	hypothetical protein
70	 18.95	-2	111425..111577	+	50	209808917	-	VSAL_II0087	-	hypothetical protein
71	 29.05	-2	111582..111908	+	108	209808918	-	VSAL_II0088	-	hypothetical protein
72	 39.78	0	112006..112983	-	325	209808919	fruR	VSAL_II0089	-	fructose repressor
73	 40.81	0	113254..114390	+	378	209808920	fruB	VSAL_II0090	-	PTS system, fructose-specific IIA/FPR component
74	 43.66	+1	114394..115371	+	325	209808921	fruK	VSAL_II0091	-	1-phosphofructokinase
75	 44.54	+1	115402..117141	+	579	209808922	fruA	VSAL_II0092	-	PTS system, fructose-specific IIBC component
76	 40.52	0	117309..117767	-	152	209808923	-	VSAL_II0093	-	hypothetical protein
77	 37.78	0	118500..118814	+	104	209808924	-	VSAL_II0095	-	transposase
78	 36.21	0	118811..119158	+	115	209808925	-	VSAL_II0096	-	transposase
79	 35.94	0	119315..120196	+	293	209808926	-	VSAL_II0097	-	transposase
80	 39.72	0	120237..121724	+	495	209808927	-	VSAL_II0098	-	transposase
81	 39.73	0	122303..123475	-	390	209808928	-	VSAL_II0099	-	putative lipoprotein
82	 41.57	0	123595..123861	-	88	209808929	-	VSAL_II0100	-	hypothetical protein
83	 41.50	0	124530..125705	-	391	209808930	-	VSAL_II0101	-	peptidase
84	 39.35	0	125864..127009	+	381	209808931	-	VSAL_II0102	-	peptide methionine sulfoxide reductase
85	 38.23	0	127079..127834	-	251	209808932	-	VSAL_II0103	-	HTH-type transcriptional regulator, DeoR-family
86	 41.51	0	128086..129027	+	313	209808933	-	VSAL_II0104	-	putative 6-phosphogluconate dehydrogenase
87	 40.39	0	129529..130719	-	396	209808934	-	VSAL_II0106	-	transposase
88	 40.62	0	130965..132158	-	397	209808935	-	VSAL_II0107	-	transposase
89	 39.43	0	135157..137238	+	693	209808936	-	VSAL_II0110	-	TonB dependent receptor
90	 40.10	0	137339..138106	+	255	209808937	-	VSAL_II0111	-	hypothetical protein
91	 42.11	+1	138108..139463	+	451	209808938	tolR2	VSAL_II0112	-	biopolymer transport protein TolR
92	 42.75	+1	139463..139972	+	169	209808939	exbB2	VSAL_II0113	-	TonB system transport protein ExbB2
93	 42.96	+1	139969..140373	+	134	209808940	exbD2	VSAL_II0114	-	TonB system transport protein ExbD2
94	 45.89	+2	140373..140993	+	206	209808941	tonB2	VSAL_II0115	-	TonB protein
95	 40.32	0	140990..142192	+	400	209808942	-	VSAL_II0116	-	hypothetical protein
96	 40.62	0	142368..143561	-	397	209808943	-	VSAL_II0117	-	transposase
97	 39.84	0	143791..144435	+	214	209808944	-	VSAL_II0118	-	membrane protein
98	 42.86	+1	144469..144993	+	174	209808945	-	VSAL_II0119	-	hypothetical protein
99	 42.01	+1	144999..145874	+	291	209808946	-	VSAL_II0120	-	hypothetical protein
100	 39.31	0	145932..146249	+	105	209808947	-	VSAL_II0121	-	hypothetical protein
38.48	MEAN

3.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.