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IslandPath Analysis: Yersinia pestis biovar Microtus str. 91001

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.78 STD DEV: 5.00

Yersinia pestis biovar Microtus str. 91001, complete genome - 1..4595065
3891 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	0	21..461	-	146	45439866	fldA1	YP_0001	-	flavodoxin
2	 41.56	-1	554..1015	-	153	45439867	asnC	YP_0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1185..2177	+	330	45439868	asnA	YP_0003	-	asparagine synthetase AsnA
4	 47.72	0	2276..3742	-	488	45439869	yieM	YP_0004	-	hypothetical protein
5	 46.40	0	3746..5314	-	522	45439870	-	YP_0005	-	regulatory ATPase RavA
6	 45.80	0	5588..7456	+	622	45439871	trkD	YP_0006	-	potassium transport protein Kup
7	 48.10	0	7661..8080	+	139	45439872	rbsD1	YP_0007	-	D-ribose pyranase
8	 50.05	0	8131..9057	+	308	45439873	rbsK1	YP_0008	-	ribokinase
9	 51.47	0	9077..9280	+	67	45439874	purR1	YP_0009	-	transcriptional regulator
10	 46.46	0	9277..10701	-	474	45439875	proP1	YP_0010	-	putative membrane transport protein
11	 44.06	0	10781..11470	-	229	45439876	fadR1	YP_0011	-	putative GntR-famly transcriptional regulator
12	 49.63	0	17690..18898	+	402	45439877	-	YP_0012	-	transposase for the IS285 insertion element
13	 40.86	-1	18956..19513	-	185	45439878	mobB	YP_0013	-	molybdopterin-guanine dinucleotide biosynthesis protein B
14	 43.15	0	19486..20127	-	213	45439879	mobA	YP_0014	-	molybdopterin-guanine dinucleotide biosynthesis protein A
15	 41.11	-1	20227..20496	+	89	45439880	-	YP_0015	-	hypothetical protein
16	 46.50	0	20587..21573	+	328	45439881	-	YP_0016	-	serine/threonine protein kinase
17	 42.15	-1	21601..22224	+	207	45439882	dsbA	YP_0017	-	periplasmic protein disulfide isomerase I
18	 47.48	0	22716..25514	+	932	45439883	polA	YP_0018	-	DNA polymerase I
19	 45.88	0	25872..26381	+	169	45439884	tnp_1	YP_0019	-	transposase for the IS1541 insertion element
20	 46.54	0	26633..27283	-	216	45439885	-	YP_0020	-	GTPase EngB
21	 48.50	0	28028..28594	+	188	45439886	-	YP_0021	-	hypothetical protein
22	 47.74	0	28777..30150	+	457	161511483	hemN1	YP_0022	-	coproporphyrinogen III oxidase
23	 52.65	0	30204..31616	-	470	161511482	glnG	YP_0023	-	nitrogen regulation protein NR(I)
24	 49.24	0	31624..32673	-	349	161511481	glnL	YP_0024	-	nitrogen regulation protein NR(II)
25	 50.78	0	32926..34335	-	469	45439890	glnA	YP_0025	-	glutamine synthetase
26	 42.77	-1	34521..34679	-	52	45439891	-	YP_0026	-	hypothetical protein
27	 49.01	0	34897..36720	+	607	45439892	bipA	YP_0027	-	putative GTPase
28	 44.16	0	37042..37632	+	196	45439893	-	YP_0028	-	phosphatase
29	 48.36	0	37669..38613	+	314	45439894	rbn	YP_0029	-	ribonuclease BN
30	 48.86	0	38620..39057	+	145	45439895	dtd	YP_0030	-	D-tyrosyl-tRNA deacylase
31	 50.45	0	39131..39913	-	260	45439896	dnaC_1	YP_0031	-	transposase/IS protein
32	 52.79	+1	39910..40932	-	340	45439897	-	YP_0032	-	transposase for insertion sequence IS100
33	 52.56	0	41326..42126	+	266	45439898	wecD1	YP_0033	-	hypothetical protein
34	 47.64	0	42261..43616	-	451	45439899	-	YP_0034	-	hypothetical protein
35	 50.57	0	44118..45527	-	469	45439900	uraA	YP_0035	-	putative membrane permease
36	 50.04	0	45741..46955	+	404	45439901	gltS	YP_0036	-	sodium/glutamate symport carrier protein
37	 51.59	0	47321..49402	-	693	45439902	recG	YP_0037	-	ATP-dependent DNA helicase RecG
38	 49.64	0	49403..50095	-	230	45439903	trmH	YP_0038	-	tRNA guanosine-2'-O-methyltransferase
39	 48.93	0	50101..52209	-	702	45439904	spoT	YP_0039	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
40	 51.45	0	52229..52504	-	91	45439905	rpoZ	YP_0040	-	DNA-directed RNA polymerase subunit omega
41	 46.47	0	52559..53182	-	207	45439906	gmk	YP_0041	-	guanylate kinase
42	 48.12	0	53583..55286	+	567	45439907	ligB	YP_0042	-	NAD-dependent DNA ligase LigB
43	 47.28	0	55299..55922	-	207	45439908	-	YP_0043	-	hypothetical protein
44	 48.50	0	56325..57188	-	287	45439909	-	YP_0044	-	hypothetical protein
45	 51.32	0	57315..58031	+	238	45439910	rph	YP_0045	-	ribonuclease PH
46	 50.77	0	58198..58845	+	215	45439911	pyrE	YP_0046	-	orotate phosphoribosyltransferase
47	 47.91	0	58980..59576	-	198	45439912	slmA	YP_0047	-	nucleoid occlusion protein
48	 49.04	0	59698..60168	-	156	45439913	dut	YP_0048	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
49	 48.15	0	60134..61348	-	404	161511480	dfp	YP_0049	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
50	 45.44	0	61545..62213	+	222	45439915	radC	YP_0050	-	DNA repair protein RadC
51	 50.63	0	62476..62712	+	78	45439916	rpmB	YP_0051	-	50S ribosomal protein L28
52	 39.29	-1	62724..62891	+	55	45439917	rpmG	YP_0052	-	50S ribosomal protein L33
53	 48.89	0	62974..63783	+	269	45439918	mutM	YP_0053	-	formamidopyrimidine-DNA glycosylase
54	 46.25	0	63789..64268	-	159	45439919	coaD	YP_0054	-	phosphopantetheine adenylyltransferase
55	 46.62	0	64265..65047	-	260	45439920	kdtX	YP_0055	-	lipopolysaccharide core biosynthesis glycosyl transferase
56	 49.64	0	65048..66433	-	461	45439921	kdtA	YP_0056	-	3-deoxy-D-manno-octulosonic-acid transferase
57	 50.71	0	66745..67734	-	329	45439922	rfaC	YP_0057	-	ADP-heptose:LPS heptosyl transferase I
58	 51.74	0	67710..68774	-	354	161511479	rfaF	YP_0058	-	ADP-heptose:LPS heptosyltransferase II
59	 45.12	0	68805..69737	-	310	161511478	rfaD	YP_0059	-	ADP-L-glycero-D-mannoheptose-6-epimerase
60	 50.08	0	69983..71194	+	403	161511477	kbl	YP_0060	-	2-amino-3-ketobutyrate coenzyme A ligase
61	 48.15	0	71204..72229	+	341	45439926	tdh	YP_0061	-	L-threonine 3-dehydrogenase
62	 49.96	0	73325..74695	-	456	45439927	nlpD1	YP_0063	-	hypothetical protein
63	 50.13	0	74705..76252	-	515	45439928	gpmI	YP_0064	-	phosphoglyceromutase
64	 45.06	0	76649..77083	+	144	45439929	pspE1	YP_0065	-	hypothetical protein
65	 51.41	0	77202..77450	+	82	45439930	grxC	YP_0066	-	glutaredoxin 3
66	 48.43	0	77538..78014	+	158	45439931	secB	YP_0067	-	preprotein translocase subunit SecB
67	 51.57	0	78014..79033	+	339	45439932	gpsA	YP_0068	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
68	 45.39	0	79093..79233	+	46	45439933	-	YP_0069	-	hypothetical protein
69	 49.76	0	79299..80120	+	273	161511476	cysE	YP_0070	-	serine acetyltransferase
70	 49.08	0	80243..80731	-	162	45439935	cspR	YP_0071	-	putative methyltransferase
71	 52.02	0	80920..81984	+	354	45439936	ada	YP_0072	-	bifunctional regulatory protein/DNA repair protein
72	 49.89	0	82033..83409	-	458	45439937	cpxA	YP_0073	-	two-component sensor protein
73	 49.79	0	83406..84128	-	240	45439938	cpxR1	YP_0074	-	DNA-binding transcriptional regulator CpxR
74	 46.63	0	84278..84766	+	162	45439939	cpxP	YP_0075	-	periplasmic stress adaptor protein CpxP
75	 46.33	0	85223..85399	+	58	45439940	-	YP_0076	-	hypothetical protein
76	 51.04	0	85444..86403	+	319	45439941	-	YP_0077	-	hypothetical protein
77	 41.46	-1	86471..86593	-	40	45439942	-	YP_0078	-	putative transposase
78	 48.50	0	86965..87867	+	300	45439943	fieF	YP_0079	-	ferrous iron efflux protein F
79	 47.15	0	88085..89068	+	327	45439944	pfkA	YP_0080	-	6-phosphofructokinase
80	 45.55	0	89256..90278	+	340	45439945	sbp	YP_0081	-	sulfate transporter subunit
81	 48.23	0	90528..91346	-	272	45439946	modA1	YP_0082	-	hypothetical protein
82	 44.61	0	91422..92849	-	475	45439947	citT1	YP_0083	-	putative membrane transport protein
83	 50.45	0	93209..93991	-	260	45439948	dnaC_2	YP_0085	-	transposase/IS protein
84	 52.79	+1	93988..95010	-	340	45439949	-	YP_0086	-	transposase for insertion sequence IS100
85	 49.88	0	95584..96405	-	273	45439950	-	YP_0087	-	hypothetical protein
86	 49.23	0	96398..97693	+	431	45439951	lysR1	YP_0088	-	transcriptional regulator
87	 48.96	0	97925..98692	-	255	45439952	tpiA	YP_0089	-	triosephosphate isomerase
88	 45.13	0	98821..99456	-	211	45439953	-	YP_0090	-	hypothetical protein
89	 50.50	0	99538..100038	+	166	45439954	-	YP_0091	-	hypothetical protein
90	 51.94	0	100379..101125	-	248	45439955	fpr	YP_0092	-	ferredoxin-NADP reductase
91	 52.42	0	101280..102290	-	336	161511475	glpX	YP_0093	-	fructose 1,6-bisphosphatase II
92	 52.03	0	102527..104050	-	507	45439957	glpK1	YP_0094	-	glycerol kinase
93	 50.88	0	104227..105075	-	282	45439958	glpF	YP_0095	-	glycerol uptake facilitator protein
94	 39.17	-1	105085..105324	-	79	45439959	-	YP_0096	-	hypothetical protein
95	 42.92	0	105687..105926	+	79	45439960	-	YP_0097	-	hypothetical protein
96	 45.88	0	106134..106643	-	169	45439961	tnp_2	YP_0098	-	transposase for the IS1541 insertion element
97	 50.72	0	106769..106975	+	68	45439962	-	YP_0099	-	hypothetical protein
98	 43.83	0	106984..109098	-	704	45439963	sunT	YP_0100	-	putative secretion ATPase
99	 39.33	-1	109091..110407	-	438	45439964	acrA1	YP_0101	-	hypothetical protein
100	 45.83	0	110596..110835	+	79	45439965	-	YP_0102	-	hypothetical protein
47.78	MEAN

5.00	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.