IslandPath Analysis: Prochlorococcus marinus str. NATL1A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.54   STD DEV: 4.51
Prochlorococcus marinus str. NATL1A, complete genome - 1..1864731
2193 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.78	0	188..1348	+	386	124024713	dnaN	NATL1_00001	-	DNA polymerase III subunit beta
2	 32.17	0	1351..2121	+	256	124024714	-	NATL1_00011	-	hypothetical protein
3	 33.87	0	2124..4535	+	803	124024715	-	NATL1_00021	-	phosphoribosylformylglycinamidine synthase II
4	 33.06	0	4597..6054	+	485	124024716	purF	NATL1_00031	-	amidophosphoribosyltransferase
5	 30.56	-1	6051..8534	-	827	124024717	-	NATL1_00041	-	DNA gyrase/topoisomerase IV, subunit A
6	 26.47	-2	8656..9486	-	276	124024718	-	NATL1_00051	-	TPR-repeat pilus assembly protein TadD
7	 33.87	0	9489..10427	-	312	124024719	-	NATL1_00061	-	hypothetical protein
8	 37.07	0	10620..11342	+	240	124024720	-	NATL1_00071	-	hypothetical protein
9	 30.62	-1	11360..11986	+	208	124024721	nusB	NATL1_00081	-	transcription antitermination protein NusB
10	 35.19	0	11983..13278	+	431	124024722	ftsY	NATL1_00091	-	signal recognition particle docking protein FtsY
11	 36.70	0	13337..14734	+	465	124024723	rsbU	NATL1_00101	-	protein phosphatase 2C domain-containing protein
12	 35.06	0	14783..16174	+	463	124024724	argH	NATL1_00111	-	argininosuccinate lyase
13	 57.37	+2	16301..17053	+	250	124024725	-	NATL1_00121	-	RNA recognition motif-containing protein
14	 33.93	0	17073..18080	-	335	124024726	-	NATL1_00131	-	tRNA-dihydrouridine synthase A
15	 38.25	0	18170..18637	+	155	124024727	-	NATL1_00141	-	hypothetical protein
16	 38.08	0	18732..19511	+	259	124024728	grpE	NATL1_00151	-	heat shock protein GrpE
17	 39.79	0	19556..20686	+	376	124024729	dnaJ	NATL1_00161	-	DnaJ protein
18	 30.00	-1	20689..20928	+	79	124024730	-	NATL1_00171	-	hypothetical protein
19	 31.84	0	20921..21859	+	312	124024731	-	NATL1_00181	-	GTPases
20	 41.09	+1	21828..22175	-	115	124024732	-	NATL1_00191	-	hypothetical protein
21	 34.36	0	22213..23088	-	291	124024733	murB	NATL1_00201	-	UDP-N-acetylenolpyruvoylglucosamine reductase
22	 30.57	-1	23092..24576	-	494	124024734	murC	NATL1_00211	-	UDP-N-acetylmuramate-alanine ligase
23	 39.20	0	24726..25748	+	340	124024735	gap2	NATL1_00221	-	glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating)
24	 34.95	0	25758..26747	-	329	124024736	thiL	NATL1_00231	-	putative thiamine-monophosphate kinase
25	 34.35	0	26760..27836	-	358	124024737	-	NATL1_00241	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
26	 40.60	+1	27900..28463	+	187	124024738	efp	NATL1_00251	-	elongation factor P
27	 41.77	+1	28460..28957	+	165	124024739	accB	NATL1_00261	-	biotin / lipoyl attachment:Acetyl-CoA biotin carboxyl carrier subunit
28	 33.04	0	28968..29993	-	341	124024740	pdxA	NATL1_00271	-	4-hydroxythreonine-4-phosphate dehydrogenase
29	 34.34	0	30180..31076	-	298	124024741	-	NATL1_00281	-	nucleoside-diphosphate-sugar epimerases
30	 31.73	0	31085..31333	+	82	124024742	-	NATL1_00291	-	hypothetical protein
31	 38.93	0	31337..31747	-	136	124024743	-	NATL1_00301	-	HNH endonuclease:HNH nuclease
32	 35.46	0	31899..32321	-	140	124024744	-	NATL1_00311	-	type II secretion system protein-like protein
33	 34.30	0	32479..32685	+	68	124024745	-	NATL1_00321	-	hypothetical protein
34	 34.55	0	32708..33862	-	384	124024746	dhsS	NATL1_00331	-	soluble hydrogenase small subunit
35	 36.74	0	33942..35087	+	381	124024747	cbiD	NATL1_00341	-	cobalt-precorrin-6A synthase
36	 37.11	0	35154..36740	+	528	124024748	guaA	NATL1_00351	-	bifunctional GMP synthase/glutamine amidotransferase protein
37	 27.37	-1	37038..38111	-	357	124024749	-	NATL1_00361	-	hypothetical protein
38	 31.37	0	39055..39972	+	305	124024750	dcm	NATL1_00371	-	site-specific DNA methylase
39	 29.94	-1	39959..40753	-	264	124024751	-	NATL1_00381	-	hypothetical protein
40	 32.94	0	41013..41780	-	255	124024752	-	NATL1_00391	-	glutathione S-transferase
41	 31.28	0	41780..41974	-	64	124024753	-	NATL1_00401	-	hypothetical protein
42	 32.41	0	42106..42969	+	287	124024754	-	NATL1_00411	-	hypothetical protein
43	 28.11	-1	43375..44829	-	484	124024755	-	NATL1_00421	-	hypothetical protein
44	 32.11	0	45128..46435	-	435	124024756	-	NATL1_00431	-	hypothetical protein
45	 27.32	-1	46962..48923	-	653	124024757	-	NATL1_00441	-	hypothetical protein
46	 29.38	-1	49387..49563	-	58	124024758	-	NATL1_00451	-	hypothetical protein
47	 37.13	0	49619..50356	+	245	124024759	-	NATL1_00461	-	hypothetical protein
48	 33.83	0	50712..51509	+	265	124024760	-	NATL1_00471	-	hypothetical protein
49	 33.33	0	51725..52087	+	120	124024761	-	NATL1_00481	-	hypothetical protein
50	 31.55	0	52308..52700	-	130	124024762	-	NATL1_00491	-	hypothetical protein
51	 39.85	0	53061..53321	-	86	124024763	-	NATL1_00501	-	hypothetical protein
52	 37.11	0	53773..54090	-	105	124024764	-	NATL1_00511	-	hypothetical protein
53	 37.75	0	54398..55009	+	203	124024765	-	NATL1_00521	-	hypothetical protein
54	 32.80	0	55026..55400	+	124	124024766	-	NATL1_00531	-	hypothetical protein
55	 35.85	0	55423..57252	+	609	124024767	-	NATL1_00541	-	putative penicillin-binding protein
56	 35.81	0	57261..57785	-	174	124024768	-	NATL1_00551	-	putative reductase
57	 37.39	0	57836..59338	-	500	124024769	-	NATL1_00561	-	flavoprotein
58	 35.86	0	59689..61467	-	592	124024770	-	NATL1_00571	-	flavoprotein
59	 35.51	0	61762..64422	+	886	124024771	alaS	NATL1_00581	-	alanyl-tRNA synthetase
60	 34.57	0	64424..66367	-	647	124024772	speA	NATL1_00591	-	arginine decarboxylase
61	 38.82	0	66510..66965	+	151	124024773	ndk	NATL1_00601	-	nucleoside diphosphate kinase
62	 39.67	0	67001..68104	-	367	124024774	dadA	NATL1_00611	-	putative thiamine biosynthesis oxidoreductase
63	 35.84	0	68204..69679	+	491	124024775	gatB	NATL1_00621	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
64	 29.77	-1	69676..70320	-	214	124024776	coaE	NATL1_00631	-	putative dephospho-CoA kinase
65	 39.35	0	70336..71598	+	420	124024777	argJ	NATL1_00641	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
66	 33.33	0	71859..72950	+	363	124024778	-	NATL1_00651	-	hypothetical protein
67	 30.63	-1	73317..73907	-	196	124024779	-	NATL1_00661	-	hypothetical protein
68	 35.14	0	74024..74356	-	110	124024780	-	NATL1_00671	-	hypothetical protein
69	 34.80	0	74344..74616	-	90	124024781	-	NATL1_00681	-	hypothetical protein
70	 37.22	0	74767..74946	-	59	124024782	-	NATL1_00691	-	hypothetical protein
71	 35.59	0	75407..75850	-	147	124024783	cynS	NATL1_00701	-	cyanate hydratase
72	 31.41	0	76076..76231	-	51	124024784	-	NATL1_00711	-	hypothetical protein
73	 35.12	0	76877..77044	-	55	124024785	-	NATL1_00721	-	hypothetical protein
74	 31.37	0	77837..80287	+	816	124024786	-	NATL1_00731	-	hypothetical protein
75	 44.44	+1	80488..80604	-	38	124024787	-	NATL1_00741	-	hypothetical protein
76	 36.57	0	81003..81620	-	205	124024788	-	NATL1_00751	-	hypothetical protein
77	 39.74	0	81623..82090	-	155	124024789	-	NATL1_00761	-	hypothetical protein
78	 37.74	0	82065..82223	-	52	124024790	-	NATL1_00771	-	hypothetical protein
79	 38.65	0	82281..82487	-	68	124024791	-	NATL1_00781	-	hypothetical protein
80	 35.76	0	82661..82825	-	54	124024792	-	NATL1_00791	-	hypothetical protein
81	 38.51	0	83024..83197	+	57	124024793	-	NATL1_00801	-	hypothetical protein
82	 38.33	0	83362..83481	-	39	124024794	-	NATL1_00811	-	hypothetical protein
83	 41.67	+1	83679..83798	-	39	124024795	-	NATL1_00821	-	hypothetical protein
84	 37.44	0	83844..85352	-	502	124024796	-	NATL1_00831	-	hypothetical protein
85	 46.67	+2	85539..90293	-	1584	124024797	-	NATL1_00841	-	hypothetical protein
86	 34.54	0	90819..91400	-	193	124024798	-	NATL1_00851	-	hypothetical protein
87	 34.48	0	91613..91786	+	57	124024799	-	NATL1_00861	-	hypothetical protein
88	 33.33	0	91924..92130	+	68	124024800	-	NATL1_00871	-	hypothetical protein
89	 31.52	0	92348..92512	+	54	124024801	-	NATL1_00881	-	hypothetical protein
90	 34.46	0	92942..93118	+	58	124024802	-	NATL1_00891	-	hypothetical protein
91	 31.43	0	93140..93349	-	69	124024803	-	NATL1_00901	-	hypothetical protein
92	 36.73	0	93549..93695	-	48	124024804	-	NATL1_00911	-	hypothetical protein
93	 32.44	0	93949..94284	-	111	124024805	-	NATL1_00921	-	hypothetical protein
94	 33.52	0	94898..95428	-	176	124024806	-	NATL1_00931	-	hypothetical protein
95	 31.13	0	95777..96094	+	105	124024807	-	NATL1_00941	-	hypothetical protein
96	 23.94	-2	96195..96407	-	70	124024808	-	NATL1_00951	-	hypothetical protein
97	 37.86	0	96518..96760	-	80	124024809	-	NATL1_00961	-	hypothetical protein
98	 29.29	-1	97207..97602	+	131	124024810	-	NATL1_00971	-	hypothetical protein
99	 28.23	-1	97602..98717	+	371	124024811	-	NATL1_00981	-	hypothetical protein
100	 32.97	0	98882..99154	+	90	124024812	-	NATL1_00991	-	hypothetical protein
35.54	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.