IslandPath Analysis: Rhodopseudomonas palustris BisA53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.57   STD DEV: 3.96
Rhodopseudomonas palustris BisA53, complete genome - 1..5505494
4878 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.47	0	641..2065	+	474	115522031	dnaA	RPE_0001	-	chromosomal replication initiation protein
2	 66.13	0	2306..3424	+	372	115522032	-	RPE_0002	-	DNA polymerase III subunit beta
3	 71.14	+1	3588..4727	+	379	115522033	recF	RPE_0003	-	recombination protein F
4	 62.03	0	4860..6068	+	402	115522034	-	RPE_0004	-	hypothetical protein
5	 65.36	0	6454..8895	+	813	115522035	gyrB	RPE_0005	-	DNA gyrase subunit B
6	 66.87	0	9047..10018	-	323	115522036	-	RPE_0006	-	signal transduction histidine kinase
7	 64.52	0	10175..11107	+	310	115522037	-	RPE_0007	-	hypothetical protein
8	 62.55	0	11109..11618	-	169	115522038	-	RPE_0008	-	AsnC family transcriptional regulator
9	 68.83	+1	11769..11999	-	76	115522039	-	RPE_0009	-	hypothetical protein
10	 60.69	0	12084..12401	-	105	115522040	-	RPE_0010	-	hypothetical protein
11	 70.00	+1	12494..12673	-	59	115522041	-	RPE_0011	-	cytochrome oxidase maturation protein, cbb3-type
12	 66.90	0	12686..14860	-	724	115522042	-	RPE_0012	-	copper-translocating P-type ATPase
13	 66.07	0	14871..15371	-	166	115522043	-	RPE_0013	-	FixH family protein
14	 62.83	0	15392..16849	-	485	115522044	-	RPE_0014	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
15	 63.72	0	16971..17852	-	293	115522045	-	RPE_0015	-	cytochrome c oxidase, cbb3-type, subunit III
16	 56.36	-2	17859..18023	-	54	115522046	-	RPE_0016	-	Cbb3-type cytochrome oxidase component
17	 61.36	0	18036..18770	-	244	115522047	-	RPE_0017	-	cytochrome c oxidase, cbb3-type, subunit II
18	 62.84	0	18783..20429	-	548	115522048	-	RPE_0018	-	cytochrome c oxidase, cbb3-type, subunit I
19	 68.51	0	20685..21605	-	306	115522049	-	RPE_0019	-	2-dehydropantoate 2-reductase
20	 64.63	0	21866..22603	-	245	115522050	-	RPE_0020	-	short-chain dehydrogenase/reductase SDR
21	 61.00	0	22712..23311	-	199	115522051	-	RPE_0021	-	DSBA oxidoreductase
22	 64.41	0	23525..24232	+	235	115522052	-	RPE_0022	-	glutathione S-transferase
23	 64.66	0	24432..25328	-	298	115522053	-	RPE_0023	-	short chain dehydrogenase
24	 68.77	+1	25421..27181	-	586	115522054	-	RPE_0024	-	gamma-glutamyltransferase
25	 65.80	0	27247..28629	+	460	115522055	-	RPE_0025	-	major facilitator transporter
26	 66.48	0	28806..30410	-	534	115522056	purH	RPE_0026	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
27	 67.86	0	30655..32409	-	584	115522057	-	RPE_0027	-	heparinase II/III-like
28	 70.44	+1	32688..34037	-	449	115522058	-	RPE_0028	-	sun protein
29	 69.88	+1	34221..34469	+	82	115522059	-	RPE_0029	-	hypothetical protein
30	 65.10	0	34487..35251	-	254	115522060	-	RPE_0030	-	hypothetical protein
31	 64.04	0	35211..35591	-	126	115522061	-	RPE_0031	-	hypothetical protein
32	 70.98	+1	35733..36311	+	192	115522062	-	RPE_0032	-	nuclease
33	 65.58	0	36314..38068	-	584	115522063	-	RPE_0033	-	alkaline phosphatase
34	 64.35	0	38315..39652	-	445	115522064	-	RPE_0034	-	argininosuccinate synthase
35	 67.82	0	39755..40534	-	259	115522065	-	RPE_0035	-	phosphoesterase, PA-phosphatase related
36	 70.20	+1	40591..41127	-	178	115522066	-	RPE_0036	-	hypothetical protein
37	 66.50	0	41127..41729	-	200	115522067	-	RPE_0037	-	metal dependent phosphohydrolase
38	 64.44	0	41726..42937	-	403	115522068	-	RPE_0038	-	radical SAM protein
39	 67.17	0	43137..43727	-	196	115522069	-	RPE_0039	-	hypothetical protein
40	 63.59	0	44027..45001	+	324	115522070	-	RPE_0040	-	alcohol dehydrogenase
41	 67.52	0	45187..46479	+	430	115522071	-	RPE_0041	-	amine oxidase
42	 68.25	0	46533..46784	-	83	115522072	-	RPE_0042	-	hypothetical protein
43	 65.29	0	46848..47357	+	169	115522073	-	RPE_0043	-	GCN5-related N-acetyltransferase
44	 61.88	0	47450..47992	+	180	115522074	-	RPE_0044	-	inorganic pyrophosphatase
45	 65.59	0	48027..49508	+	493	115522075	-	RPE_0045	-	hypothetical protein
46	 63.73	0	49590..51290	-	566	115522076	-	RPE_0046	-	methyl-accepting chemotaxis sensory transducer
47	 68.24	0	51616..52503	-	295	115522077	-	RPE_0047	-	methenyltetrahydrofolate cyclohydrolase
48	 71.30	+1	52514..52837	-	107	115522078	-	RPE_0048	-	hypothetical protein
49	 57.39	-1	52859..53149	-	96	115522079	-	RPE_0049	-	protein of unknown function YGGT
50	 66.67	0	53521..53721	-	66	115522080	-	RPE_0050	-	hypothetical protein
51	 56.15	-2	53834..54736	-	300	115522081	-	RPE_0051	-	hypothetical protein
52	 66.26	0	54865..55350	-	161	115522082	-	RPE_0052	-	hypothetical protein
53	 67.26	0	55426..56265	-	279	115522083	-	RPE_0053	-	glutamine amidotransferase
54	 66.41	0	56410..57189	-	259	115522084	-	RPE_0054	-	short-chain dehydrogenase/reductase SDR
55	 62.89	0	57409..57885	-	158	115522085	-	RPE_0055	-	hypothetical protein
56	 66.45	0	58031..59440	-	469	115522086	-	RPE_0056	-	adenylate/guanylate cyclase
57	 68.87	+1	59437..60843	-	468	115522087	-	RPE_0057	-	cytochrome P450
58	 69.76	+1	61106..62788	+	560	115522088	-	RPE_0058	-	protein of unknown function DUF894, DitE
59	 64.81	0	62808..63023	-	71	115522089	-	RPE_0059	-	hypothetical protein
60	 62.72	0	63403..69405	+	2000	115522090	-	RPE_0060	-	putative DNA helicase
61	 58.66	-1	69841..70302	+	153	115522091	-	RPE_0061	-	hypothetical protein
62	 71.34	+1	70763..72496	-	577	115522092	-	RPE_0062	-	HemY domain-containing protein
63	 72.91	+2	72504..73880	-	458	115522093	-	RPE_0063	-	hypothetical protein
64	 67.34	0	73938..74684	-	248	115522094	-	RPE_0064	-	uroporphyrinogen III synthase HEM4
65	 68.63	+1	74813..75982	+	389	115522095	-	RPE_0065	-	O-sialoglycoprotein endopeptidase
66	 70.52	+1	76221..77207	+	328	115522096	gpsA	RPE_0066	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
67	 61.11	0	77211..77624	+	137	115522097	-	RPE_0067	-	hypothetical protein
68	 68.02	0	77843..78505	+	220	115522098	-	RPE_0068	-	hypothetical protein
69	 64.51	0	79015..80961	+	648	115522099	-	RPE_0069	-	acetyl-CoA synthetase
70	 67.64	0	82504..83118	-	204	115522100	-	RPE_0070	-	methyltransferase type 12
71	 68.51	0	83681..84601	-	306	115522101	-	RPE_0071	-	hypothetical protein
72	 62.70	0	84598..85152	-	184	115522102	-	RPE_0072	-	hypothetical protein
73	 64.66	0	85168..86313	-	381	115522103	-	RPE_0073	-	acyl-CoA dehydrogenase domain-containing protein
74	 66.07	0	86466..86966	-	166	115522104	-	RPE_0074	-	YbhB and YbcL
75	 62.76	0	87406..87840	+	144	115522105	-	RPE_0075	-	hypothetical protein
76	 69.06	+1	87979..88896	+	305	115522106	-	RPE_0076	-	hypothetical protein
77	 66.67	0	88997..89326	+	109	115522107	-	RPE_0077	-	hypothetical protein
78	 66.78	0	89385..91142	+	585	115522108	-	RPE_0078	-	carbamoyltransferase
79	 64.31	0	91124..91801	+	225	115522109	-	RPE_0079	-	hypothetical protein
80	 63.91	0	91837..92562	+	241	115522110	-	RPE_0080	-	hypothetical protein
81	 68.41	0	92597..93859	+	420	115522111	-	RPE_0081	-	cytochrome P450
82	 63.56	0	93972..94583	+	203	115522112	-	RPE_0082	-	FkbM family methyltransferase
83	 67.34	0	94723..95466	+	247	115522113	-	RPE_0083	-	nuclease
84	 69.25	+1	95497..96387	-	296	115522114	-	RPE_0084	-	transglutaminase domain-containing protein
85	 70.44	+1	96384..98822	-	812	115522115	-	RPE_0085	-	hypothetical protein
86	 67.72	0	98882..102190	-	1102	115522116	-	RPE_0086	-	transglutaminase domain-containing protein
87	 63.14	0	102253..102564	-	103	115522117	-	RPE_0087	-	hypothetical protein
88	 62.24	0	102832..103260	+	142	115522118	-	RPE_0088	-	hypothetical protein
89	 69.14	+1	103330..103572	+	80	115522119	-	RPE_0089	-	hypothetical protein
90	 65.60	0	103550..105802	-	750	115522120	-	RPE_0090	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
91	 69.61	+1	106170..107120	+	316	115522121	mepA	RPE_0091	-	penicillin-insensitive murein endopeptidase
92	 60.13	-1	107449..108228	+	259	115522122	-	RPE_0092	-	hypothetical protein
93	 69.00	+1	108475..110274	-	599	115522123	-	RPE_0093	-	potassium/proton antiporter
94	 64.00	0	110652..111476	+	274	115522124	-	RPE_0094	-	methionine aminopeptidase, type I
95	 58.97	-1	111820..112365	+	181	115522125	-	RPE_0095	-	hypothetical protein
96	 63.78	0	112747..113889	+	380	115522126	-	RPE_0096	-	TRAP dicarboxylate transporter
97	 64.99	0	113994..114707	+	237	115522127	-	RPE_0097	-	tripartite ATP-independent periplasmic transporter DctQ
98	 64.79	0	114704..116620	+	638	115522128	-	RPE_0098	-	TRAP C4-dicarboxylate transport system permease DctM subunit
99	 55.39	-2	116856..117449	-	197	115522129	-	RPE_0099	-	methyltransferase type 11
100	 56.20	-2	117559..118131	-	190	115522130	-	RPE_0100	-	hypothetical protein
64.57	MEAN

3.96	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.