IslandPath Analysis: Pelobacter propionicus DSM 2379



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.84   STD DEV: 6.26
Pelobacter propionicus DSM 2379, complete genome - 1..4008000
3576 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.95	0	1..1353	+	450	118578450	-	Ppro_0001	-	chromosomal replication initiator protein DnaA
2	 53.39	0	1565..2686	+	373	118578451	-	Ppro_0002	-	DNA polymerase III, beta subunit
3	 59.48	0	2698..3810	+	370	118578452	-	Ppro_0003	-	DNA replication and repair protein RecF
4	 59.32	0	3803..6211	+	802	118578453	-	Ppro_0004	-	DNA gyrase, B subunit
5	 60.70	0	6243..8774	+	843	118578454	-	Ppro_0005	-	DNA gyrase, A subunit
6	 63.81	0	8807..10417	+	536	118578455	-	Ppro_0006	-	hypothetical protein
7	 65.59	+1	10401..11420	+	339	118578456	-	Ppro_0007	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
8	 47.37	-1	11640..12665	+	341	118578457	-	Ppro_0008	-	hypothetical protein
9	 37.75	-2	12668..13120	+	150	118578458	-	Ppro_0009	-	death-on-curing family protein
10	 49.60	-1	13140..13391	-	83	118578459	-	Ppro_0010	-	hypothetical protein
11	 59.22	0	13408..14952	+	514	118578460	-	Ppro_0011	-	hypothetical protein
12	 63.31	0	15002..15478	+	158	118578461	-	Ppro_0012	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
13	 63.92	0	15699..16607	-	302	118578462	-	Ppro_0013	-	chaperone DnaJ domain-containing protein
14	 64.61	0	16744..18153	+	469	118578463	-	Ppro_0014	-	protoporphyrinogen oxidase
15	 62.63	0	18156..18899	+	247	118578464	-	Ppro_0015	-	hypothetical protein
16	 60.47	0	19006..19989	-	327	118578465	-	Ppro_0016	-	3-oxoacyl-(acyl-carrier-protein) synthase III
17	 67.27	+1	20125..20454	-	109	118578466	-	Ppro_0017	-	hypothetical protein
18	 62.92	0	20451..21251	-	266	118578467	-	Ppro_0018	-	inositol monophosphatase
19	 55.56	0	21616..22974	+	452	118578468	-	Ppro_0019	-	transposase, IS4 family protein
20	 52.98	0	23144..23428	+	94	118578469	-	Ppro_0020	-	protein of unknown function YGGT
21	 62.82	0	23874..24185	+	103	118578470	-	Ppro_0022	-	hypothetical protein
22	 62.10	0	24425..24949	+	174	118578471	-	Ppro_0023	-	peptidylprolyl isomerase, FKBP-type
23	 62.90	0	25053..26696	-	547	118578472	-	Ppro_0024	-	Zinc finger-domain-containing protein
24	 64.31	0	26796..27686	-	296	118578473	-	Ppro_0025	-	hypothetical protein
25	 62.96	0	28133..29158	-	341	118578474	-	Ppro_0026	-	galactose-1-phosphate uridylyltransferase
26	 63.66	0	29259..31454	-	731	118578475	-	Ppro_0027	-	glycoside hydrolase family protein
27	 61.92	0	31489..33996	-	835	118578476	-	Ppro_0028	-	nucleotidyl transferase
28	 57.48	0	34051..34431	-	126	118578477	-	Ppro_0029	-	response regulator receiver protein
29	 60.61	0	34409..36010	-	533	118578478	-	Ppro_0030	-	GAF sensor signal transduction histidine kinase
30	 62.35	0	36193..37674	-	493	118578479	-	Ppro_0031	-	cysteinyl-tRNA synthetase
31	 51.00	-1	37842..38090	-	82	118578480	-	Ppro_0032	-	hypothetical protein
32	 61.20	0	38130..39629	+	499	118578481	-	Ppro_0033	-	oxaloacetate decarboxylase
33	 63.25	0	39685..41235	+	516	118578482	-	Ppro_0034	-	carboxyl transferase
34	 62.05	0	41488..41877	+	129	118578483	-	Ppro_0035	-	biotin/lipoyl attachment domain-containing protein
35	 67.35	+1	42037..42474	-	145	118578484	-	Ppro_0036	-	hypothetical protein
36	 64.86	0	42754..44028	+	424	118578485	-	Ppro_0037	-	processing peptidase
37	 61.47	0	44305..45363	+	352	118578486	-	Ppro_0038	-	2-nitropropane dioxygenase, NPD
38	 66.34	+1	45530..46459	+	309	118578487	-	Ppro_0039	-	ArsR family transcriptional regulator
39	 46.53	-1	46556..47305	+	249	118578488	-	Ppro_0040	-	hypothetical protein
40	 62.23	0	47363..48760	+	465	118578489	-	Ppro_0041	-	S-adenosyl-L-homocysteine hydrolase
41	 62.07	0	48856..50553	-	565	118578490	-	Ppro_0042	-	methyl-accepting chemotaxis sensory transducer
42	 65.35	+1	50797..51405	+	202	118578491	-	Ppro_0043	-	GDSL family lipase
43	 61.95	0	51547..52713	+	388	118578492	-	Ppro_0044	-	S-adenosylmethionine synthetase
44	 64.00	0	52814..53902	+	362	118578493	-	Ppro_0045	-	3-isopropylmalate dehydrogenase
45	 63.57	0	53943..55040	+	365	118578494	-	Ppro_0046	-	aspartate-semialdehyde dehydrogenase
46	 66.18	+1	55056..56075	+	339	118578495	-	Ppro_0047	-	aspartate-semialdehyde dehydrogenase
47	 53.61	0	56278..56568	+	96	118578496	-	Ppro_0048	-	hypothetical protein
48	 58.43	0	56573..57811	+	412	118578497	-	Ppro_0049	-	hypothetical protein
49	 57.67	0	57821..59731	+	636	118578498	-	Ppro_0050	-	asparagine synthase
50	 60.84	0	59728..60534	+	268	118578499	-	Ppro_0051	-	hypothetical protein
51	 54.58	0	60585..60890	-	101	118578500	-	Ppro_0052	-	hypothetical protein
52	 59.21	0	61100..61729	+	209	118578501	-	Ppro_0053	-	phage tail collar domain-containing protein
53	 62.28	0	62017..62700	+	227	118578502	-	Ppro_0054	-	TPR repeat-containing protein
54	 65.06	0	62697..63632	+	311	118578503	-	Ppro_0055	-	methionyl-tRNA formyltransferase
55	 58.83	0	63704..64609	+	301	118578504	-	Ppro_0056	-	HPr kinase
56	 57.11	0	64606..65442	+	278	118578505	-	Ppro_0057	-	sulfotransferase
57	 57.47	0	65504..66286	+	260	118578506	-	Ppro_0058	-	hypothetical protein
58	 65.00	0	66294..66773	+	159	118578507	-	Ppro_0059	-	hypothetical protein
59	 62.55	0	66825..67577	+	250	118578508	-	Ppro_0060	-	hypothetical protein
60	 68.04	+1	67574..69394	+	606	118578509	-	Ppro_0061	-	ABC transporter related
61	 62.90	0	69391..70665	+	424	118578510	-	Ppro_0062	-	hypothetical protein
62	 61.92	0	70793..71698	+	301	118578511	-	Ppro_0063	-	sulfate adenylyltransferase subunit 2
63	 62.86	0	71698..73614	+	638	118578512	-	Ppro_0064	-	sulfate adenylyltransferase, large subunit
64	 64.48	0	73645..76113	+	822	118578513	-	Ppro_0065	-	peptidase U32
65	 54.61	0	76163..78409	+	748	118578514	-	Ppro_0066	-	multi-sensor hybrid histidine kinase
66	 56.62	0	78467..79342	+	291	118578515	-	Ppro_0067	-	hypothetical protein
67	 64.90	0	79363..79872	+	169	118578516	-	Ppro_0068	-	nuclease
68	 61.65	0	80008..80685	+	225	118578517	-	Ppro_0069	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
69	 65.92	+1	80691..82694	+	667	118578518	-	Ppro_0070	-	NADH dehydrogenase (quinone)
70	 63.27	0	82764..83912	-	382	118578519	-	Ppro_0071	-	Na+/H+ antiporter NhaA
71	 65.85	+1	83909..84523	-	204	118578520	-	Ppro_0072	-	CMP/dCMP deaminase, zinc-binding
72	 63.69	0	84758..85294	-	178	118578521	-	Ppro_0073	-	hypothetical protein
73	 66.42	+1	85545..87137	-	530	118578522	-	Ppro_0074	-	putative delta-1-pyrroline-5-carboxylate dehydrogenase
74	 64.86	0	87624..88067	-	147	118578523	-	Ppro_0075	-	CheW protein
75	 64.09	0	88064..89344	-	426	118578524	-	Ppro_0076	-	methyl-accepting chemotaxis sensory transducer
76	 63.40	0	89429..90286	-	285	118578525	-	Ppro_0077	-	MCP methyltransferase, CheR-type
77	 64.01	0	90416..91168	+	250	118578526	-	Ppro_0078	-	hypothetical protein
78	 67.45	+1	91161..92054	+	297	118578527	-	Ppro_0079	-	hypothetical protein
79	 64.78	0	92125..94239	+	704	118578528	-	Ppro_0080	-	1A family penicillin-binding protein
80	 64.90	0	94271..94723	+	150	118578529	-	Ppro_0081	-	hypothetical protein
81	 65.91	+1	94857..95651	-	264	118578530	-	Ppro_0082	-	phage SPO1 DNA polymerase-related protein
82	 64.12	0	95756..96658	+	300	118578531	-	Ppro_0083	-	hypothetical protein
83	 57.06	0	97153..101211	-	1352	118578532	-	Ppro_0084	-	YD repeat-containing protein
84	 58.61	0	101720..102625	-	301	118578533	-	Ppro_0085	-	diguanylate cyclase with PAS/PAC sensor
85	 58.69	0	102622..103260	-	212	118578534	-	Ppro_0086	-	CheC, inhibitor of MCP methylation
86	 58.06	0	103265..103636	-	123	118578535	-	Ppro_0087	-	response regulator receiver protein
87	 65.84	+1	103757..104968	-	403	118578536	-	Ppro_0088	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
88	 62.18	0	105012..105635	-	207	118578537	-	Ppro_0089	-	beta-lactamase domain-containing protein
89	 58.49	0	105800..105958	+	52	118578538	-	Ppro_0090	-	rubredoxin-type Fe(Cys)4 protein
90	 63.63	0	106413..108977	+	854	118578539	-	Ppro_0091	-	multi-sensor signal transduction histidine kinase
91	 60.51	0	109051..109521	+	156	118578540	-	Ppro_0092	-	response regulator receiver protein
92	 64.75	0	109621..111450	+	609	118578541	-	Ppro_0093	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
93	 58.85	0	111547..112314	-	255	118578542	-	Ppro_0094	-	enoyl-CoA hydratase/isomerase
94	 56.76	0	112692..113741	+	349	118578543	-	Ppro_0096	-	filamentation induced by cAMP protein Fic
95	 51.00	-1	114268..114516	-	82	118578544	-	Ppro_0097	-	hypothetical protein
96	 48.48	-1	114578..114973	-	131	118578545	-	Ppro_0098	-	hypothetical protein
97	 51.88	-1	115003..115719	-	238	118578546	-	Ppro_0099	-	metallophosphoesterase
98	 52.82	0	115768..116475	-	235	118578547	-	Ppro_0100	-	hypothetical protein
99	 50.68	-1	116480..116773	-	97	118578548	-	Ppro_0101	-	hypothetical protein
100	 40.58	-2	116775..117050	+	91	118578549	-	Ppro_0102	-	hypothetical protein
58.84	MEAN

6.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.