IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.80	0	34..1422	+	462	145597325	dnaA	YPDSF_0001	-	chromosomal replication initiation protein
2	 50.32	0	1427..2527	+	366	145597326	-	YPDSF_0002	-	DNA polymerase III subunit beta
3	 52.82	0	2502..3779	+	425	145597327	recF	YPDSF_0003	-	recombination protein F
4	 49.44	0	3805..6219	+	804	145597328	gyrB	YPDSF_0004	-	DNA gyrase subunit B
5	 47.78	0	6435..7244	+	269	145597329	-	YPDSF_0005	-	sugar phosphatase
6	 46.44	0	7638..8423	-	261	145597330	-	YPDSF_0006	-	transposase for insertion sequence IS1661
7	 50.52	0	9199..10152	-	317	145597331	-	YPDSF_0007	-	ornithine cyclodeaminase
8	 52.96	+1	10146..11108	-	320	145597332	-	YPDSF_0008	-	hypothetical protein
9	 52.56	0	11316..11627	+	103	145597333	-	YPDSF_0009	-	hypothetical protein
10	 52.06	0	11617..11931	+	104	145597334	-	YPDSF_0010	-	hypothetical protein
11	 50.15	0	11971..12309	-	112	145597335	-	YPDSF_0011	-	hypothetical protein
12	 42.51	-1	12677..13090	+	137	145597336	-	YPDSF_0012	-	heat shock protein IbpA
13	 48.82	0	13371..13835	+	154	145597337	-	YPDSF_0013	-	heat shock chaperone IbpB
14	 51.18	0	14208..15866	+	552	145597338	-	YPDSF_0014	-	hypothetical protein
15	 47.85	0	15979..17349	-	456	145597339	avtA	YPDSF_0015	-	valine--pyruvate transaminase
16	 52.52	0	18557..20620	-	687	145597340	malS	YPDSF_0016	-	periplasmic alpha-amylase precursor
17	 51.17	0	20909..21889	-	326	145597341	-	YPDSF_0017	-	D-isomer specific 2-hydroxyacid dehydrogenase
18	 53.49	+1	22408..23052	+	214	145597342	-	YPDSF_0018	-	hypothetical protein
19	 54.24	+1	23183..23842	-	219	145597343	-	YPDSF_0019	-	putative outer membrane lipoprotein
20	 51.97	0	24200..24655	-	151	145597344	-	YPDSF_0020	-	hypothetical protein
21	 47.99	0	24652..25224	-	190	145597345	-	YPDSF_0021	-	DNA-3-methyladenine glycosylase
22	 52.79	0	25552..26466	+	304	145597346	glyQ	YPDSF_0022	-	glycyl-tRNA synthetase subunit alpha
23	 52.32	0	26476..28545	+	689	145597347	glyS	YPDSF_0023	-	glycyl-tRNA synthetase subunit beta
24	 49.31	0	29018..29737	+	239	145597348	-	YPDSF_0024	-	hypothetical protein
25	 51.35	0	30387..32318	+	643	145597349	-	YPDSF_0025	-	PTS system, mannitol-specific IIABC component
26	 51.20	0	32455..33618	+	387	145597350	-	YPDSF_0026	-	mannitol-1-phosphate 5-dehydrogenase
27	 48.47	0	33825..34379	+	184	145597351	mtlR	YPDSF_0027	-	mannitol repressor protein
28	 46.78	0	34628..34984	+	118	145597352	-	YPDSF_0028	-	hypothetical protein
29	 40.46	-1	35153..35629	-	158	145597353	-	YPDSF_0029	-	hypothetical protein
30	 38.96	-1	36262..36492	-	76	145597354	-	YPDSF_0030	-	membrane protein
31	 49.23	0	36682..38631	-	649	145597355	-	YPDSF_0031	-	methyl-accepting chemotaxis protein II
32	 51.76	0	38975..39598	-	207	145597356	-	YPDSF_0032	-	superoxide dismutase
33	 53.82	+1	40034..40858	-	274	145597357	-	YPDSF_0033	-	formate dehydrogenase accessory protein
34	 52.38	0	41055..41642	+	195	145597358	-	YPDSF_0034	-	twin-arginine translocation pathway signal
35	 51.66	0	41691..44102	+	803	145597359	-	YPDSF_0035	-	hypothetical protein
36	 53.91	+1	44115..45086	+	323	145597360	-	YPDSF_0036	-	formate dehydrogenase-O, iron-sulfur subunit
37	 50.52	0	45083..45757	+	224	145597361	-	YPDSF_0037	-	formate dehydrogenase-O subunit gamma
38	 49.57	0	45757..46686	+	309	145597362	-	YPDSF_0038	-	formate dehydrogenase accessory protein FdhE
39	 54.79	+1	46870..48258	+	462	145597363	-	YPDSF_0039	-	selenocysteine synthase
40	 55.71	+1	48255..50207	+	650	145597364	-	YPDSF_0040	-	selenocysteinyl-tRNA-specific translation factor
41	 35.90	-2	50967..51083	+	38	145597365	-	YPDSF_0042	-	membrane protein
42	 49.55	0	51105..52313	-	402	145597366	-	YPDSF_0043	-	transposase for the IS285 insertion element
43	 37.97	-2	52636..53217	-	193	145597367	-	YPDSF_0044	-	hypothetical protein
44	 28.49	-2	53296..53481	-	61	145597368	-	YPDSF_0045	-	hypothetical protein
45	 51.79	0	53927..55156	-	409	145597369	-	YPDSF_0046	-	multidrug translocase
46	 46.44	0	55629..56414	-	261	145597370	-	YPDSF_0047	-	transposase for insertion sequence IS1661
47	 49.14	0	57176..57934	-	252	145597371	-	YPDSF_0048	-	DNA-binding transcriptional repressor GlpR
48	 50.30	0	57969..58805	-	278	145597372	-	YPDSF_0049	-	intramembrane serine protease GlpG
49	 48.18	0	58823..59152	-	109	145597373	glpE	YPDSF_0050	-	thiosulfate sulfurtransferase
50	 51.03	0	59527..62238	-	903	145597374	-	YPDSF_0051	-	transcriptional regulator MalT
51	 49.46	0	62556..64961	+	801	145597375	-	YPDSF_0052	-	glycogen/starch/alpha-glucan phosphorylase
52	 51.22	0	64974..67070	+	698	145597376	malQ	YPDSF_0053	-	4-alpha-glucanotransferase
53	 46.70	0	67399..67974	-	191	145597377	-	YPDSF_0054	-	putative DNA uptake protein
54	 55.27	+1	68034..68735	-	233	145597378	-	YPDSF_0055	-	gluconate periplasmic binding protein
55	 52.01	0	68801..69598	+	265	145597379	-	YPDSF_0056	-	biotin biosynthesis protein
56	 44.07	0	69768..70037	+	89	145597380	-	YPDSF_0057	-	hypothetical protein
57	 52.33	0	70175..70432	-	85	145597381	-	YPDSF_0058	-	hypothetical protein
58	 51.08	0	70468..72783	-	771	145597382	feoB	YPDSF_0059	-	ferrous iron transport protein B
59	 48.68	0	72875..73102	-	75	145597383	feoA	YPDSF_0060	-	ferrous iron transport protein A
60	 54.17	+1	73626..76001	-	791	145597384	-	YPDSF_0061	-	hypothetical protein
61	 49.22	0	76535..77050	+	171	145597385	greB	YPDSF_0062	-	transcription elongation factor GreB
62	 52.22	0	77186..77905	+	239	145597386	ompR	YPDSF_0063	-	osmolarity response regulator
63	 51.52	0	77902..79254	+	450	145597387	envZ	YPDSF_0064	-	osmolarity sensor protein
64	 49.57	0	79409..81028	-	539	145597388	-	YPDSF_0065	-	phosphoenolpyruvate carboxykinase
65	 49.21	0	81225..82106	-	293	145597389	hslO	YPDSF_0066	-	Hsp33-like chaperonin
66	 52.21	0	82269..82676	-	135	145597390	-	YPDSF_0067	-	heat shock protein 15
67	 48.02	0	82705..83385	-	226	145597391	-	YPDSF_0068	-	hypothetical protein
68	 48.37	0	83529..85676	-	715	145597392	-	YPDSF_0069	-	membrane protein
69	 47.44	0	86263..86808	+	181	145597393	nudE	YPDSF_0070	-	ADP-ribose diphosphatase NudE
70	 51.76	0	86944..89499	-	851	145597394	mrcA	YPDSF_0071	-	peptidoglycan synthetase
71	 52.06	0	89619..90515	+	298	145597395	-	YPDSF_0072	-	hypothetical protein
72	 51.82	0	90515..91120	+	201	145597396	-	YPDSF_0073	-	hypothetical protein
73	 49.44	0	91068..91694	+	208	145597397	-	YPDSF_0074	-	hypothetical protein
74	 47.09	0	91660..92088	+	142	145597398	-	YPDSF_0075	-	membrane protein
75	 41.79	-1	92091..92480	-	129	145597399	-	YPDSF_0076	-	hypothetical protein
76	 48.12	0	92287..93639	+	450	145597400	-	YPDSF_0077	-	putative outer membrane porin HofQ
77	 47.89	0	93988..94509	+	173	145597401	aroK	YPDSF_0078	-	shikimate kinase I
78	 49.77	0	94566..95654	+	362	145597402	aroB	YPDSF_0079	-	3-dehydroquinate synthase
79	 48.59	0	95908..96897	+	329	145597403	-	YPDSF_0080	-	hypothetical protein
80	 45.71	0	96981..97796	+	271	145597404	-	YPDSF_0081	-	DNA adenine methylase
81	 49.71	0	98099..98776	+	225	145597405	-	YPDSF_0082	-	ribulose-phosphate 3-epimerase
82	 51.79	0	98769..99467	+	232	162202303	-	YPDSF_0083	-	phosphoglycolate phosphatase
83	 48.41	0	99469..100509	+	346	145597407	-	YPDSF_0084	-	tryptophanyl-tRNA synthetase
84	 53.16	+1	100628..102049	-	473	145597408	cysG	YPDSF_0085	-	siroheme synthase
85	 53.78	+1	102137..102943	-	268	145597409	-	YPDSF_0086	-	nitrite transporter NirC
86	 51.38	0	103122..103448	-	108	145597410	nirD	YPDSF_0087	-	nitrite reductase small subunit
87	 51.63	0	103445..105991	-	848	145597411	-	YPDSF_0088	-	nitrite reductase
88	 51.66	0	106313..107611	+	432	145597412	-	YPDSF_0089	-	cytosine deaminase
89	 47.76	0	107696..108880	-	394	145597413	-	YPDSF_0090	-	hypothetical protein
90	 50.51	0	109366..111426	+	686	145597414	-	YPDSF_0091	-	membrane receptor protein
91	 51.37	0	111539..112525	-	328	145597415	-	YPDSF_0092	-	LacI family transcriptional regulator
92	 45.26	0	114596..115165	+	189	145597416	-	YPDSF_0095	-	peptidyl-prolyl cis-trans isomerase A (rotamase A)
93	 51.95	0	115491..117032	+	513	145597417	-	YPDSF_0096	-	hypothetical protein
94	 51.91	0	117275..117850	+	191	145597418	-	YPDSF_0097	-	para-aminobenzoate synthase component II
95	 52.87	+1	117983..119200	+	405	145597419	argD	YPDSF_0098	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
96	 48.37	0	119426..121546	-	706	145597420	-	YPDSF_0099	-	hypothetical protein
97	 46.76	0	121632..122264	-	210	145597421	-	YPDSF_0100	-	cAMP-regulatory protein
98	 49.26	0	122600..123007	+	135	145597422	-	YPDSF_0101	-	hypothetical protein
99	 33.80	-2	123079..123510	+	143	145597423	-	YPDSF_0102	-	hypothetical protein
100	 49.54	0	123688..124557	-	289	145597424	-	YPDSF_0103	-	phosphoribulokinase 1
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.