IslandPath Analysis: Chlamydophila pneumoniae CWL029



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 2.78
Chlamydophila pneumoniae CWL029, complete genome - 1..1230230
1052 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.07	0	1..282	-	93	15617930	-	CPn0001	-	hypothetical protein
2	 38.56	0	573..878	+	101	15617931	gatC	CPn0002	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
3	 44.08	+1	895..2373	+	492	15617932	gatA	CPn0003	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
4	 43.01	0	2370..3836	+	488	15617933	gatB	CPn0004	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
5	 41.10	0	4127..6895	+	922	15617934	pmp_1	CPn0005	-	polymorphic Outer membrane protein G family
6	 51.28	+2	7138..7293	-	51	15617935	-	CPn0006	-	hypothetical protein
7	 40.93	0	7605..10499	+	964	15617936	-	CPn0007	-	hypothetical protein
8	 43.28	0	10975..11688	+	237	15617937	-	CPn0008	-	hypothetical protein
9	 41.21	0	11815..13122	+	435	15617938	-	CPn0009	-	hypothetical protein
10	 45.53	+1	13435..14328	+	297	15617939	-	CPn0010	-	hypothetical protein
11	 43.33	0	14379..15749	+	456	15617940	-	CPn0010.1	-	hypothetical protein
12	 38.15	0	15892..16617	+	241	15617941	-	CPn0011	-	hypothetical protein
13	 38.42	0	16644..18215	+	523	15617942	-	CPn0012	-	hypothetical protein
14	 43.31	0	18584..21109	+	841	15617943	pmp_2	CPn0013	-	polymorphic Outer membrane protein G family
15	 42.96	0	30600..32687	-	695	15617944	-	CPn0020	-	putative outer membrane protein
16	 44.23	+1	32704..34410	-	568	15617945	-	CPn0021	-	putative outer membrane protein
17	 40.27	0	34392..34982	-	196	15617946	maf	CPn0022	-	Maf-like protein
18	 41.12	0	35011..36603	-	530	15617947	yjjK	CPn0023	-	ABC transporter ATPase
19	 42.07	0	36658..37596	-	312	15617948	xerC	CPn0024	-	site-specific tyrosine recombinase XerC
20	 43.18	0	37681..38604	-	307	15617949	atsA	CPn0025	-	ribonuclease Z
21	 41.75	0	38759..39625	-	288	15617950	-	CPn0026	-	hypothetical protein
22	 40.77	0	39775..42234	-	819	15617951	lon	CPn0027	-	Lon ATP-dependent protease
23	 36.51	-1	42540..43325	-	261	15617952	-	CPn0028	-	hypothetical protein
24	 37.67	-1	43387..43755	-	122	15617953	-	CPn0029	-	hypothetical protein
25	 41.43	0	43891..44532	+	213	15617954	gcp_1	CPn0030	-	O-sialoglycoprotein endopeptidase
26	 40.68	0	44711..44887	+	58	15617955	rpsU	CPn0031	-	30S ribosomal protein S21
27	 43.85	+1	44923..46101	+	392	15617956	dnaJ	CPn0032	-	heat shock protein J
28	 45.16	+1	46138..48174	+	678	15617957	pdhA/pdhB	CPn0033	-	(pyruvate) oxoisovalerate dehydrogenase Alpha & Beta fusion
29	 41.49	0	48207..49457	-	416	15617958	-	CPn0034	-	hypothetical protein
30	 43.92	+1	49566..51029	-	487	15617959	-	CPn0035	-	hypothetical protein
31	 40.35	0	51002..51799	+	265	15617960	-	CPn0036	-	hypothetical protein
32	 40.98	0	51792..52118	+	108	15617961	ptsH	CPn0037	-	PTS phosphocarrier protein Hpr
33	 43.01	0	52119..53834	+	571	15617962	ptsI	CPn0038	-	PTS PEP phosphotransferase
34	 41.92	0	53960..54250	-	96	15617963	ybaB	CPn0039	-	hypothetical protein
35	 40.71	0	54315..55643	-	442	15617964	dnaX_1	CPn0040	-	DNA polymerase III subunits gamma and tau
36	 43.33	0	55996..57345	+	449	15617965	-	CPn0041	-	hypothetical protein
37	 40.74	0	57403..58185	+	260	15617966	-	CPn0042	-	hypothetical protein
38	 43.18	0	58447..60375	+	642	15617967	-	CPn0043	-	hypothetical protein
39	 38.57	0	60419..60781	+	120	15617968	-	CPn0044	-	hypothetical protein
40	 43.30	0	61069..62793	+	574	15617969	-	CPn0045	-	hypothetical protein
41	 39.62	0	62790..63266	+	158	15617970	-	CPn0046	-	hypothetical protein
42	 33.33	-2	63455..63655	+	66	15617971	-	CPn0047	-	hypothetical protein
43	 41.88	0	63687..65804	+	705	15617972	yqfF	CPn0048	-	inner membrane protein
44	 39.75	0	65814..66296	-	160	15617973	-	CPn0049	-	hypothetical protein
45	 39.94	0	66496..66813	-	105	15617974	-	CPn0050	-	hypothetical protein
46	 41.49	0	66833..67114	+	93	15617975	-	CPn0051	-	hypothetical protein
47	 45.39	+1	67301..68005	-	234	15617976	hemC	CPn0052	-	porphobilinogen deaminase
48	 43.83	+1	67983..69344	-	453	15617977	sms	CPn0053	-	DNA repair protein RadA
49	 43.00	0	69310..70023	-	237	15617978	rnc	CPn0054	-	ribonuclease III
50	 40.86	0	70129..70593	+	154	15617979	-	CPn0055	-	hypothetical protein
51	 43.07	0	70953..72749	+	598	15617980	mrsA	CPn0056	-	phosphomannomutase
52	 39.90	0	72934..73557	+	207	15617981	sodM	CPn0057	-	superoxide dismutase (Mn)
53	 42.93	0	73639..74565	+	308	15617982	accD	CPn0058	-	acetyl-CoA carboxylase subunit beta
54	 45.66	+1	74616..75053	+	145	15617983	dut	CPn0059	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
55	 41.51	0	75055..75531	+	158	15617984	ptsN_1	CPn0060	-	PTS IIA protein
56	 39.09	0	75534..76211	+	225	15617985	ptsN_2	CPn0061	-	PTS IIA protein + HTH DNA-binding domain
57	 40.98	0	76308..77693	+	461	15617986	-	CPn0062	-	hypothetical protein
58	 36.48	-1	78112..78270	+	52	15617987	-	CPn0063	-	hypothetical protein
59	 46.15	+1	78346..78579	+	77	15617988	-	CPn0064	-	hypothetical protein
60	 41.71	0	78924..80654	+	576	15617989	-	CPn0065	-	hypothetical protein
61	 42.85	0	80925..82658	+	577	15617990	-	CPn0066	-	hypothetical protein
62	 39.31	0	82953..84056	+	367	15617991	-	CPn0067	-	hypothetical protein
63	 36.11	-1	84328..84903	-	191	15617992	-	CPn0068	-	hypothetical protein
64	 44.50	+1	85236..87089	+	617	15617993	-	CPn0069	-	hypothetical protein
65	 36.21	-1	87205..87378	-	57	15617994	-	CPn0070	-	hypothetical protein
66	 36.00	-1	87596..88045	-	149	15617995	-	CPn0071	-	hypothetical protein
67	 37.80	-1	88054..89061	-	335	15617996	-	CPn0072	-	hypothetical protein
68	 42.79	0	89356..89577	+	73	15617997	infA	CPn0073	-	translation initiation factor IF-1
69	 43.12	0	89774..90958	+	394	15617998	tuf	CPn0074	-	elongation factor Tu
70	 32.54	-2	91102..91353	+	83	15617999	secE	CPn0075	-	preprotein translocase subunit SecE
71	 38.07	-1	91358..91906	+	182	15618000	nusG	CPn0076	-	transcription antitermination protein NusG
72	 38.26	0	92013..92438	+	141	15618001	rplK	CPn0077	-	50S ribosomal protein L11
73	 38.63	0	92465..93163	+	232	15618002	rplA	CPn0078	-	50S ribosomal protein L1
74	 40.35	0	93179..93691	+	170	15618003	rplJ	CPn0079	-	50S ribosomal protein L10
75	 38.72	0	93735..94124	+	129	15618004	rplL	CPn0080	-	50S ribosomal protein L7/L12
76	 40.22	0	94261..98019	+	1252	15618005	rpoB	CPn0081	-	DNA-directed RNA polymerase subunit beta
77	 40.44	0	98043..102224	+	1393	15618006	rpoC	CPn0082	-	DNA-directed RNA polymerase subunit beta'
78	 38.82	0	102332..103315	+	327	15618007	tal	CPn0083	-	transaldolase B
79	 33.33	-2	103362..103754	+	130	15618008	-	CPn0084	-	ferredoxin
80	 38.98	0	103763..104506	-	247	15618009	-	CPn0085	-	hypothetical protein
81	 40.83	0	104904..105530	+	208	15618010	atpE	CPn0086	-	V-type ATP synthase subunit E
82	 36.70	-1	105579..106379	+	266	15618011	-	CPn0087	-	hypothetical protein
83	 42.00	0	106373..108148	+	591	15618012	atpA	CPn0088	-	V-type ATP synthase subunit A
84	 40.09	0	108153..109469	+	438	15618013	atpB	CPn0089	-	V-type ATP synthase subunit B
85	 39.68	0	109454..110083	+	209	15618014	atpD	CPn0090	-	V-type ATP synthase subunit D
86	 39.69	0	110074..112056	+	660	15618015	atpI	CPn0091	-	V-type ATP synthase subunit I
87	 43.66	+1	112151..112576	+	141	15618016	atpK	CPn0092	-	V-type ATP synthase subunit K
88	 43.53	0	112509..113018	+	169	15618017	-	CPn0093	-	hypothetical protein
89	 42.47	0	113152..115974	+	940	15618018	valS	CPn0094	-	valyl-tRNA synthetase
90	 40.62	0	115995..118793	+	932	161353778	pknD	CPn0095	-	serine/threonine-protein kinase
91	 42.26	0	118834..124314	-	1826	15618020	uvrA	CPn0096	-	excinuclease ABC subunit A
92	 42.61	0	124555..126009	+	484	15618021	pyk	CPn0097	-	pyruvate kinase
93	 39.03	0	126088..127491	-	467	15618022	htrB	CPn0098	-	lipid A biosynthesis lauroyl acyltransferase
94	 40.22	0	127593..127868	+	91	15618023	-	CPn0099	-	hypothetical protein
95	 36.34	-1	127879..129141	-	420	15618024	-	CPn0100	-	hypothetical protein
96	 41.13	0	129138..129932	-	264	15618025	ybbP	CPn0101	-	hypothetical protein
97	 38.08	-1	130123..131469	+	448	15618026	cydA	CPn0102	-	cytochrome oxidase subunit I
98	 39.61	0	131480..132514	+	344	15618027	cydB	CPn0103	-	cytochrome oxidase subunit II
99	 40.65	0	132673..133875	-	400	15618028	-	CPn0104	-	hypothetical protein
100	 39.54	0	134026..134847	-	273	15618029	-	CPn0105	-	hypothetical protein
40.88	MEAN

2.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.