IslandPath Analysis: Geobacter uraniireducens Rf4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 5.82
Geobacter uraniireducens Rf4, complete genome - 1..5136364
4357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.52	-2	46..1395	+	449	148262086	-	Gura_0001	-	chromosomal replication initiator protein DnaA
2	 38.16	-2	1611..2729	+	372	148262087	-	Gura_0002	-	DNA polymerase III, beta subunit
3	 43.74	-1	2810..3904	+	364	148262088	-	Gura_0003	-	DNA replication and repair protein RecF
4	 52.41	0	3913..6297	+	794	148262089	-	Gura_0004	-	DNA gyrase, B subunit
5	 56.66	0	6355..8853	+	832	148262090	-	Gura_0005	-	DNA gyrase, A subunit
6	 54.78	0	8937..10517	+	526	148262091	-	Gura_0006	-	hypothetical protein
7	 54.83	0	10587..11600	+	337	148262092	-	Gura_0007	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
8	 51.25	0	11698..13974	+	758	148262093	-	Gura_0008	-	multi-sensor signal transduction histidine kinase
9	 55.60	0	13961..15487	+	508	148262094	-	Gura_0009	-	multi-sensor signal transduction histidine kinase
10	 53.99	0	15519..17333	+	604	148262095	-	Gura_0010	-	multi-sensor signal transduction histidine kinase
11	 51.77	0	17330..19510	+	726	148262096	-	Gura_0011	-	multi-sensor signal transduction histidine kinase
12	 58.90	0	19507..20433	+	308	148262097	-	Gura_0012	-	daunorubicin resistance ABC transporter ATPase subunit
13	 57.94	0	20508..21263	+	251	148262098	-	Gura_0013	-	ABC-2 type transporter
14	 58.38	0	21393..22466	+	357	148262099	-	Gura_0014	-	radical SAM domain-containing protein
15	 60.39	+1	22609..23628	+	339	148262100	-	Gura_0015	-	uroporphyrinogen decarboxylase
16	 62.88	+1	23781..24599	+	272	148262101	-	Gura_0016	-	hypothetical protein
17	 63.77	+1	24612..26720	-	702	148262102	-	Gura_0017	-	hypothetical protein
18	 63.11	+1	26740..27750	-	336	148262103	-	Gura_0018	-	alcohol dehydrogenase
19	 59.26	0	27963..28475	+	170	148262104	-	Gura_0019	-	membrane protein-like protein
20	 57.88	0	28392..29837	-	481	148262105	-	Gura_0020	-	heat shock protein DnaJ domain-containing protein
21	 46.38	-1	29988..30263	+	91	148262106	-	Gura_0021	-	hypothetical protein
22	 62.38	+1	30334..31056	-	240	148262107	-	Gura_0022	-	Hsp33 protein
23	 55.43	0	31207..31740	-	177	148262108	-	Gura_0023	-	hypothetical protein
24	 61.29	+1	31893..34271	-	792	148262109	-	Gura_0024	-	peptidase U32
25	 54.28	0	34313..34756	+	147	148262110	-	Gura_0025	-	histidine kinase
26	 54.40	0	34799..35287	-	162	148262111	-	Gura_0026	-	hypothetical protein
27	 60.10	0	35537..36556	-	339	148262112	-	Gura_0027	-	3-deoxy-7-phosphoheptulonate synthase
28	 53.48	0	37020..37580	+	186	148262113	-	Gura_0028	-	hypothetical protein
29	 54.73	0	37784..38554	+	256	148262114	-	Gura_0029	-	nucleic acid binding, OB-fold, tRNA/helicase-type
30	 56.49	0	38797..39258	+	153	148262115	-	Gura_0030	-	membrane protein-like protein
31	 57.08	0	39277..40569	+	430	148262116	-	Gura_0031	-	peptidase M16 domain-containing protein
32	 59.38	0	40640..41023	+	127	148262117	-	Gura_0032	-	cobalamin (vitamin B12) biosynthesis CbiX protein
33	 60.12	0	41023..41664	+	213	148262118	-	Gura_0033	-	precorrin-8X methylmutase CbiC/CobH
34	 60.54	+1	41685..42794	+	369	148262119	-	Gura_0034	-	cobalamin biosynthesis protein CbiD
35	 59.61	0	42881..44098	+	405	148262120	-	Gura_0035	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
36	 59.46	0	44215..44949	+	244	148262121	-	Gura_0036	-	precorrin-2 C20-methyltransferase
37	 53.56	0	45042..45308	+	88	148262122	-	Gura_0037	-	prevent-host-death family protein
38	 54.20	0	45296..45736	+	146	148262123	-	Gura_0038	-	PilT domain-containing protein
39	 62.03	+1	45854..46630	+	258	148262124	-	Gura_0039	-	precorrin-4 C11-methyltransferase
40	 58.00	0	46804..47865	+	353	148262125	-	Gura_0040	-	cobalamin (vitamin B12) biosynthesis CbiG protein
41	 60.03	0	47902..50265	+	787	148262126	-	Gura_0041	-	cobyric acid synthase CobQ
42	 62.31	+1	50335..51321	+	328	148262127	-	Gura_0042	-	cobalamin biosynthesis protein CobD
43	 60.34	+1	51562..52635	+	357	148262128	-	Gura_0043	-	putative L-threonine-O-3-phosphate decarboxylase
44	 51.74	0	52662..53492	-	276	148262129	-	Gura_0044	-	type IV pilus assembly PilZ
45	 54.55	0	54023..54451	+	142	148262130	-	Gura_0045	-	ferric uptake regulator family protein
46	 58.36	0	54448..55398	+	316	148262131	-	Gura_0046	-	periplasmic solute binding protein
47	 58.17	0	55389..56141	+	250	148262132	-	Gura_0047	-	ABC transporter related
48	 56.04	0	56242..57060	+	272	148262133	-	Gura_0048	-	ABC-3 protein
49	 53.60	0	57308..57751	+	147	148262134	-	Gura_0049	-	response regulator receiver protein
50	 55.86	0	57841..59163	+	440	148262135	-	Gura_0050	-	response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor
51	 52.30	0	59228..61183	+	651	148262136	-	Gura_0051	-	multi-sensor signal transduction histidine kinase
52	 59.81	0	61234..62064	+	276	148262137	-	Gura_0052	-	extracellular solute-binding protein
53	 56.33	0	62244..63578	+	444	148262138	-	Gura_0053	-	integral membrane sensor signal transduction histidine kinase
54	 51.99	0	63613..65016	+	467	148262139	-	Gura_0054	-	response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor
55	 56.12	0	65073..65603	+	176	148262140	-	Gura_0055	-	CMP/dCMP deaminase, zinc-binding
56	 56.62	0	66502..71754	+	1750	148262141	-	Gura_0056	-	hypothetical protein
57	 57.24	0	71880..72314	+	144	148262142	-	Gura_0057	-	hypothetical protein
58	 51.65	0	72314..73312	+	332	148262143	-	Gura_0058	-	integrase catalytic subunit
59	 41.75	-2	73425..74018	+	197	148262144	-	Gura_0059	-	hypothetical protein
60	 37.28	-2	74015..74977	+	320	148262145	-	Gura_0060	-	hypothetical protein
61	 40.99	-2	75182..75952	+	256	148262146	-	Gura_0061	-	hypothetical protein
62	 54.21	0	76021..76662	+	213	148262147	-	Gura_0062	-	hypothetical protein
63	 47.62	-1	76777..77028	-	83	148262148	-	Gura_0063	-	hypothetical protein
64	 52.15	0	77043..77855	-	270	148262149	-	Gura_0064	-	IstB ATP binding domain-containing protein
65	 54.45	0	77845..79293	-	482	148262150	-	Gura_0065	-	integrase catalytic subunit
66	 49.43	0	80297..85384	+	1695	148262151	-	Gura_0068	-	fibronectin, type III domain-containing protein
67	 51.20	0	85416..86372	+	318	148262152	-	Gura_0069	-	hypothetical protein
68	 53.60	0	86378..92233	+	1951	148262153	-	Gura_0070	-	APHP domain-containing protein
69	 62.29	+1	92423..93313	+	296	148262154	prpB	Gura_0071	-	2-methylisocitrate lyase
70	 60.05	0	93310..94428	+	372	148262155	-	Gura_0072	-	2-methylcitrate synthase/citrate synthase II
71	 61.41	+1	94436..95881	+	481	148262156	prpD	Gura_0073	-	2-methylcitrate dehydratase
72	 58.76	0	96022..96603	-	193	148262157	-	Gura_0074	-	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
73	 57.88	0	97075..103743	+	2222	148262158	-	Gura_0075	-	cytochrome C family protein
74	 57.66	0	103752..108068	+	1438	148262159	-	Gura_0076	-	cytochrome C family protein
75	 57.81	0	108130..115629	+	2499	148262160	-	Gura_0077	-	cytochrome C family protein
76	 49.19	0	115981..116289	-	102	148262161	-	Gura_0078	-	hypothetical protein
77	 56.28	0	116557..117519	+	320	148262162	-	Gura_0079	-	metal dependent phosphohydrolase
78	 58.33	0	117731..118162	+	143	148262163	-	Gura_0080	-	heavy metal transport/detoxification protein
79	 53.98	0	118220..118684	+	154	148262164	-	Gura_0081	-	membrane protein-like protein
80	 58.66	0	118684..119844	+	386	148262165	-	Gura_0082	-	hypothetical protein
81	 56.33	0	119949..120635	+	228	148262166	-	Gura_0083	-	ABC transporter related
82	 54.24	0	120705..121823	+	372	148262167	-	Gura_0084	-	integral membrane sensor signal transduction histidine kinase
83	 55.56	0	121820..123178	+	452	148262168	-	Gura_0085	-	two component, sigma-54 specific, Fis family transcriptional regulator
84	 55.11	0	123752..124279	-	175	148262169	-	Gura_0086	-	hypothetical protein
85	 57.25	0	124889..126163	+	424	148262170	-	Gura_0087	-	outer membrane efflux protein
86	 57.07	0	126274..127680	+	468	148262171	-	Gura_0088	-	RND family efflux transporter MFP subunit
87	 59.71	0	127924..131070	+	1048	148262172	-	Gura_0089	-	CzcA family heavy metal efflux protein
88	 52.41	0	131158..131634	+	158	148262173	-	Gura_0090	-	hypothetical protein
89	 56.66	0	131727..132635	+	302	148262174	-	Gura_0091	-	hypothetical protein
90	 51.26	0	132648..133082	+	144	148262175	-	Gura_0092	-	hypothetical protein
91	 59.65	0	133160..133672	+	170	148262176	-	Gura_0093	-	hypothetical protein
92	 55.68	0	134192..134974	+	260	148262177	-	Gura_0094	-	ECF subfamily RNA polymerase sigma-24 factor
93	 59.69	0	135043..135960	+	305	148262178	-	Gura_0095	-	alpha/beta hydrolase fold
94	 62.00	+1	136135..136734	+	199	148262179	-	Gura_0096	-	NAD(P)H dehydrogenase (quinone)
95	 51.03	0	136843..137520	+	225	148262180	-	Gura_0097	-	hypothetical protein
96	 50.14	0	137542..138237	-	231	148262181	-	Gura_0098	-	protein-disulfide isomerase-like protein
97	 62.07	+1	138711..139319	+	202	148262182	-	Gura_0099	-	ECF subfamily RNA polymerase sigma-24 factor
98	 66.76	+2	139319..140434	+	371	148262183	-	Gura_0100	-	putative transmembrane anti-sigma factor
99	 62.44	+1	140569..141348	+	259	148262184	-	Gura_0101	-	hypothetical protein
100	 52.91	0	141537..141914	+	125	148262185	-	Gura_0102	-	hypothetical protein
54.31	MEAN

5.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.