IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.86   STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.34	0	1..1362	+	453	15902045	dnaA	spr0001	-	chromosomal replication initiation protein
2	 34.48	-1	1521..2657	+	378	15902046	dnaN	spr0002	-	DNA polymerase III subunit beta
3	 34.87	-1	2722..2916	+	64	15902047	-	spr0003	-	hypothetical protein
4	 39.96	0	3000..4115	+	371	15902048	-	spr0004	-	translation-associated GTPase
5	 33.33	-1	4186..4755	+	189	15902049	pth	spr0005	-	peptidyl-tRNA hydrolase
6	 35.01	-1	4756..8265	+	1169	15902050	mfd	spr0006	-	transcription-repair coupling factor
7	 34.83	-1	8323..8589	+	88	15902051	-	spr0007	-	S4 domain protein
8	 34.69	-1	8582..8950	+	122	15902052	-	spr0008	-	hypothetical protein
9	 32.74	-1	9001..10338	+	445	15902053	-	spr0009	-	hypothetical protein
10	 33.72	-1	10335..11612	+	425	15902054	-	spr0010	-	hypothetical protein
11	 33.33	-1	11616..12158	+	180	15902055	hgt	spr0011	-	hypoxanthine-guanine phosphoribosyltransferase
12	 39.20	0	12174..14132	+	652	15902056	ftsH	spr0012	-	cell division protein FtsH
13	 37.29	0	14254..14733	+	159	15902057	comX1	spr0013	-	competence-specific global transcription modulator
14	 36.78	0	20207..20554	+	115	15902058	transposase_A	spr0014	-	transposase
15	 33.96	-1	20593..20751	-	52	15902059	-	spr0015	-	hypothetical protein
16	 38.05	0	20733..21071	+	112	15902060	transposase_B	spr0016	-	transposase
17	 36.71	0	21106..21312	-	68	15902061	IS1167-truncation	spr0017	-	degenerate transposase (orf2)
18	 40.00	0	21455..21604	-	49	15902062	IS1167-truncation	spr0018	-	degenerate transposase (orf2)
19	 37.20	0	21645..21851	-	68	15902063	IS1167-truncation	spr0019	-	degenerate transposase (orf1)
20	 29.22	-2	22162..22404	+	80	15902064	-	spr0020	-	hypothetical protein
21	 40.71	0	22635..23921	+	428	15902065	purA	spr0021	-	adenylosuccinate synthetase
22	 43.80	0	24122..24589	+	155	15902066	-	spr0022	-	cytidine/deoxycytidylate deaminase family protein
23	 44.59	+1	24776..25219	+	147	15902067	dut	spr0023	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
24	 42.31	0	25158..25736	+	192	15902068	-	spr0024	-	hypothetical protein
25	 47.66	+1	25849..27111	+	420	15902069	radA	spr0025	-	DNA repair protein RadA
26	 42.15	0	27115..27681	+	188	15902070	-	spr0026	-	hypothetical protein
27	 37.27	0	27706..28365	+	219	15902071	-	spr0027	-	hypothetical protein
28	 41.67	0	28583..29602	+	339	15902072	prsA	spr0028	-	ribose-phosphate pyrophosphokinase
29	 35.11	-1	29624..30016	-	130	15902073	IS1167-truncation	spr0029	-	degenerate transposase (orf1)
30	 46.31	+1	30143..30481	-	112	15902074	-	spr0030	-	hypothetical protein
31	 39.83	0	30700..31053	-	117	15902075	-	spr0031	-	hypothetical protein
32	 43.93	0	31306..33939	+	877	15902076	polA	spr0032	-	DNA polymerase I
33	 44.29	0	34024..34461	+	145	15902077	-	spr0033	-	hypothetical protein
34	 46.24	+1	34652..35674	-	340	15902078	-	spr0034	-	hypothetical protein
35	 45.98	+1	35811..36980	+	389	15902079	aspC	spr0035	-	aromatic amino acid aminotransferase
36	 41.63	0	36977..37747	+	256	15902080	recO	spr0036	-	DNA repair protein RecO
37	 47.83	+1	37744..38736	+	330	15902081	plsX	spr0037	-	putative glycerol-3-phosphate acyltransferase PlsX
38	 38.89	0	38742..38975	+	77	15902082	acpP	spr0038	-	acyl carrier protein, putative
39	 38.10	0	39018..39311	+	97	15902083	IS1381-truncation	spr0039	-	degenerate transposase (orf2)
40	 46.75	+1	39514..39744	+	76	15902084	thmA	spr0040	-	amphipathic pore-forming peptide precursor
41	 38.02	0	40224..40991	-	255	15902085	IS1167	spr0041	-	transposase
42	 37.96	0	40982..41500	-	172	15902086	IS1167	spr0042	-	transposase
43	 44.66	+1	41902..44055	+	717	15902087	comA	spr0043	-	competence factor transporting ATP-binding/permease protein ComA
44	 44.52	+1	44068..45417	+	449	15902088	comB	spr0044	-	competence factor transport protein ComB
45	 40.00	0	45545..46294	+	249	15902089	purC	spr0045	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
46	 45.48	+1	46493..50221	+	1242	15902090	purL	spr0046	-	phosphoribosylformylglycinamidine synthase, putative
47	 46.71	+1	50314..51756	+	480	15902091	purF	spr0047	-	amidophosphoribosyltransferase
48	 47.02	+1	51793..52815	+	340	15902092	purM	spr0048	-	phosphoribosylaminoimidazole synthetase
49	 47.07	+1	52812..53357	+	181	15902093	purN	spr0049	-	phosphoribosylglycinamide formyltransferase
50	 29.41	-2	53441..53950	+	169	15902094	vanZ	spr0050	-	vanZ protein, putative
51	 47.61	+1	53954..55522	+	522	15902095	purH	spr0051	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
52	 47.51	+1	55644..56906	+	420	15902096	purD	spr0052	-	phosphoribosylamine--glycine ligase
53	 49.23	+2	57276..57797	+	173	15902097	purE	spr0053	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
54	 47.66	+1	57724..58875	+	383	15902098	purK	spr0054	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
55	 35.96	0	58885..59112	+	75	15902099	-	spr0055	-	hypothetical protein
56	 46.34	+1	59175..60473	+	432	15902100	purB	spr0056	-	adenylosuccinate lyase
57	 42.14	0	60528..64466	-	1312	15902101	strH	spr0057	-	beta-N-acetylhexosaminidase
58	 37.15	0	64781..65539	-	252	15902102	-	spr0058	-	hypothetical protein
59	 41.95	0	65845..67632	+	595	15902103	bgaC	spr0059	-	Beta-galactosidase 3
60	 41.09	0	67629..68105	+	158	15902104	PTS-EIIB	spr0060	-	PTS system, IIB component
61	 44.37	0	68133..69038	+	301	15902105	PTS-EIIC	spr0061	-	PTS system, IIC component
62	 40.43	0	69010..69840	+	276	15902106	PTS-EIID	spr0062	-	PTS system, IID component
63	 43.95	0	69847..70251	+	134	15902107	PTS-EII	spr0063	-	PTS system, IIA component
64	 42.25	0	70549..71715	+	388	15902108	agaS	spr0064	-	sugar isomerase domain protein AgaS
65	 45.47	+1	71831..72868	+	345	15902109	galM	spr0065	-	aldose 1-epimerase
66	 44.33	0	73075..73929	+	284	15902110	-	spr0066	-	hypothetical protein
67	 39.53	0	74079..74336	+	85	15902111	-	spr0067	-	hypothetical protein
68	 48.63	+1	75311..76075	+	254	15902112	-	spr0068	-	hypothetical protein
69	 32.08	-1	76547..76705	+	52	15902113	-	spr0069	-	hypothetical protein
70	 41.45	0	76686..78065	+	459	15902114	trkH	spr0070	-	Trk transporter membrane-spanning protein - K+ transport
71	 43.52	0	78058..78744	+	228	15902115	trkA	spr0071	-	Trk transporter NAD+ binding protein - K+ transport
72	 44.63	+1	79054..79593	+	179	15902116	-	spr0072	-	hypothetical protein
73	 44.74	+1	79471..80040	-	189	15902117	-	spr0073	-	hypothetical protein
74	 42.34	0	79660..80070	+	136	15902118	-	spr0074	-	hypothetical protein
75	 42.94	0	80186..83671	+	1161	15902119	-	spr0075	-	cell wall surface anchor family protein
76	 41.77	0	83838..84536	+	232	15902120	rr08	spr0076	-	DNA-binding response regulator
77	 43.97	0	84533..85585	+	350	15902121	hk08	spr0077	-	sensor histidine kinase
78	 43.63	0	85780..86391	+	203	15902122	rpsD	spr0078	-	30S ribosomal protein S4
79	 35.03	-1	86559..86735	+	58	15902123	transposase_A	spr0079	-	degenerative transposase
80	 42.22	0	87044..87313	+	89	15902124	-	spr0080	-	hypothetical protein
81	 40.83	0	87777..88736	+	319	15902125	ABC-MSP	spr0081	-	ABC transporter permease
82	 42.21	0	88750..89673	+	307	15902126	ABC-MSP	spr0082	-	ABC transporter permease
83	 37.61	0	89862..91406	+	514	15902127	ABC-SBP	spr0083	-	ABC transporter substrate-binding protein
84	 44.48	+1	91678..92664	+	328	15902128	-	spr0084	-	hypothetical protein
85	 40.34	0	92633..93646	+	337	15902129	-	spr0085	-	hypothetical protein
86	 40.00	0	93718..94782	-	354	15902130	-	spr0086	-	hypothetical protein
87	 40.60	0	94845..95807	-	320	15902131	-	spr0087	-	hypothetical protein
88	 43.94	0	95749..96342	-	197	15902132	-	spr0088	-	hypothetical protein
89	 42.20	0	96329..96655	-	108	15902133	-	spr0089	-	hypothetical protein
90	 44.82	+1	96794..97960	-	388	15902134	-	spr0090	-	transporter, putative
91	 33.33	-1	98018..99175	+	385	15902135	-	spr0091	-	hypothetical protein
92	 42.19	0	99217..101067	+	616	15902136	capD	spr0092	-	CapD protein, required for the biosynthesis of type 1 capsular polysaccharide
93	 43.13	0	101463..102095	-	210	15902137	gph	spr0093	-	phosphoglycolate phosphatase
94	 48.00	+1	102117..102989	-	290	15902138	sdaA	spr0094	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
95	 41.67	0	102998..103669	-	223	15902139	sdaB	spr0095	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
96	 40.87	0	103911..104414	+	167	15902140	-	spr0096	-	LysM domain protein
97	 38.55	0	104537..104785	-	82	15902141	-	spr0097	-	hypothetical protein
98	 39.36	0	105242..105490	+	82	15902142	-	spr0098	-	bacteriocin, putative
99	 37.89	0	105545..107653	+	702	15902143	ABC-MSP	spr0099	-	ABC transporter membrane-spanning permease - amino acid transport
100	 40.81	0	107650..108291	+	213	15902144	ABC-NBD	spr0100	-	amino acid ABC transporter ATP-binding protein
39.86	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.