IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.90	0	110..1192	+	360	13540832	-	TVN0001	-	GTPase
2	 41.19	0	1433..3442	+	669	13540833	-	TVN0002	-	formate dehydrogenase, alpha subunit
3	 41.04	0	3439..4359	+	306	13540834	-	TVN0003	-	ferredoxin subunit of sulfhydrogenase II
4	 44.90	+1	4397..5131	+	244	13540835	-	TVN0004	-	anaerobic sulfite reduction protein B
5	 39.90	0	5588..7018	+	476	13540836	-	TVN0005	-	phosphate ABC transporter permease
6	 45.34	+1	7048..7455	-	135	13540837	-	TVN0006	-	hypothetical protein
7	 40.18	0	7691..8143	+	150	13540838	-	TVN0007	-	30S ribosomal protein S19e
8	 38.40	0	8127..8501	+	124	13540839	-	TVN0008	-	hypothetical protein
9	 44.23	0	8498..8653	+	51	13540840	rpl39e	TVN0009	-	50S ribosomal protein L39e
10	 37.41	-1	8663..8932	+	89	13540841	-	TVN0010	-	50S ribosomal protein L31e
11	 40.94	0	8973..9629	+	218	13540842	-	TVN0011	-	translation initiation factor IF-6
12	 43.71	0	9630..10130	-	166	13540843	pyrE	TVN0012	-	orotate phosphoribosyltransferase
13	 40.22	0	10229..12073	+	614	13540844	-	TVN0013	-	Rad3-related DNA helicase
14	 43.20	0	12192..12647	+	151	13540845	-	TVN0014	-	N-terminal acetyltransferase complex, Ard1 subunit
15	 44.47	+1	12665..13867	-	400	13540846	-	TVN0015	-	S-adenosylmethionine synthetase
16	 41.09	0	14001..15470	+	489	13540847	purH	TVN0016	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
17	 41.80	0	15475..16230	-	251	13540848	-	TVN0017	-	enoyl-CoA hydratase
18	 38.59	0	16337..17173	-	278	13540849	-	TVN0018	-	hypothetical protein
19	 43.49	0	17184..19496	-	770	13540850	-	TVN0019	-	DNA topoisomerase I
20	 41.39	0	19502..19774	-	90	13540851	-	TVN0020	-	acylphosphatase
21	 36.17	-1	19869..21347	-	492	13540852	-	TVN0021	-	permease
22	 41.28	0	21463..22242	-	259	13540853	-	TVN0022	-	ABC-type multidrug transport system, ATPase component
23	 40.06	0	22763..23743	-	326	13540854	-	TVN0023	-	hypothetical protein
24	 44.96	+1	23909..25258	+	449	13540855	-	TVN0024	-	4-aminobutyrate aminotransferase
25	 43.08	0	25269..25781	-	170	13540856	-	TVN0025	-	hypothetical protein
26	 39.90	0	25913..26689	-	258	13540857	-	TVN0026	-	arsenite transporting ATPase
27	 42.83	0	26800..27936	+	378	13540858	-	TVN0027	-	cell division protein FtsZ
28	 41.26	0	28471..29151	+	226	13540859	-	TVN0028	-	orotidine 5'-phosphate decarboxylase
29	 41.27	0	29176..29868	+	230	13540860	-	TVN0029	-	secreted serine protease (ClpP class)
30	 37.94	0	29865..30797	-	310	13540861	cobD	TVN0030	-	cobalamin biosynthesis protein
31	 39.94	0	30868..32274	-	468	13540862	-	TVN0031	-	cobyric acid synthase
32	 41.55	0	32497..34869	+	790	13540863	valS	TVN0032	-	valyl-tRNA synthetase
33	 42.02	0	35198..36820	+	540	13540864	-	TVN0033	-	CTP synthetase
34	 36.67	-1	37710..38039	+	109	13540865	-	TVN0034	-	sterol carrier protein
35	 43.07	0	38125..41370	+	1081	13540866	-	TVN0035	-	DNA polymerase II large subunit
36	 41.34	0	41375..42148	+	257	13540867	-	TVN0036	-	GTPase
37	 40.98	0	42157..42771	-	204	13540868	-	TVN0037	-	hypothetical protein
38	 40.86	0	42761..43039	-	92	13540869	-	TVN0038	-	hypothetical protein
39	 36.65	-1	43106..43618	+	170	13540870	-	TVN0039	-	hypothetical protein
40	 44.91	+1	43806..44090	+	94	13540871	-	TVN0040	-	hypothetical protein
41	 38.50	0	44114..44713	-	199	13540872	-	TVN0041	-	regulator of amino acid metabolism
42	 37.36	-1	44802..45074	-	90	13540873	-	TVN0042	-	hypothetical protein
43	 49.71	+2	45165..45689	-	174	13540874	-	TVN0043	-	hypothetical protein
44	 39.23	0	46243..46971	+	242	13540875	-	TVN0044	-	TPR repeat-containing protein
45	 41.46	0	46979..47335	-	118	13540876	-	TVN0045	-	hypothetical protein
46	 41.63	0	47464..48222	+	252	13540877	-	TVN0046	-	exonuclease III
47	 44.57	+1	48225..49505	-	426	13540878	glyA	TVN0047	-	serine hydroxymethyltransferase
48	 42.98	0	49756..49983	+	75	13540879	-	TVN0048	-	H+-ATPase subunit K
49	 35.48	-1	49989..50546	+	185	13540880	-	TVN0049	-	V-type ATP synthase subunit E
50	 40.06	0	50548..51618	+	356	13540881	-	TVN0050	-	V-type ATP synthase subunit C
51	 40.32	0	51620..51934	+	104	13540882	-	TVN0051	-	V-type ATP synthase subunit F
52	 44.36	+1	51944..54274	+	776	13540883	-	TVN0052	-	V-type ATP synthase subunit A
53	 45.84	+1	54255..55637	+	460	13540884	-	TVN0053	-	V-type ATP synthase subunit B
54	 42.90	0	55622..56269	+	215	13540885	-	TVN0054	-	V-type ATP synthase subunit D
55	 40.48	0	56417..56752	+	111	13540886	-	TVN0055	-	V-type ATP synthase subunit H
56	 41.46	0	56755..58686	+	643	13540887	-	TVN0056	-	V-type ATP synthase subunit I
57	 39.83	0	58751..59350	+	199	13540888	-	TVN0057	-	glutamine amidotransferase subunit PdxT
58	 37.28	-1	59351..60439	+	362	13540889	-	TVN0058	-	aminomethyltransferase (glycine cleavage system T protein)
59	 38.98	0	60866..61804	-	312	13540890	-	TVN0059	-	UDP-glucose 4-epimerase
60	 40.69	0	61978..62181	+	67	13540891	-	TVN0060	-	nucleic-acid-binding protein (Zn-ribbon)
61	 44.82	+1	62254..62871	+	205	13540892	-	TVN0061	-	superoxide dismutase
62	 36.42	-1	62879..63493	+	204	13540893	-	TVN0062	-	N-glycosylase/DNA lyase
63	 42.31	0	63671..64561	-	296	13540894	-	TVN0063	-	phosphate permease
64	 41.77	0	64561..65125	-	188	13540895	-	TVN0064	-	hypothetical protein
65	 43.82	0	65335..65973	+	212	13540896	-	TVN0065	-	MarC family integral membrane protein
66	 39.39	0	65980..66474	+	164	13540897	-	TVN0066	-	2'-5' RNA ligase
67	 42.75	0	66522..67031	+	169	13540898	-	TVN0067	-	hypothetical protein
68	 41.30	0	67028..67504	-	158	13540899	-	TVN0068	-	nucleic-acid-binding protein
69	 48.17	+2	67506..68678	-	390	13540900	-	TVN0069	-	acetyl-CoA acetyltransferase
70	 41.67	0	69015..70322	+	435	13540901	-	TVN0070	-	proline/betaine transport permease
71	 47.00	+1	70571..71521	+	316	13540902	-	TVN0071	-	threonine synthase
72	 45.51	+1	71521..72555	+	344	13540903	-	TVN0072	-	hypothetical protein
73	 41.68	0	72606..74006	+	466	13540904	-	TVN0073	-	metal-binding protein containing
74	 44.31	+1	74056..75057	+	333	13540905	-	TVN0074	-	D-mannonate dehydratase
75	 43.38	0	75046..75831	-	261	13540906	-	TVN0075	-	aldose dehydrogenase
76	 42.83	0	75867..76361	-	164	13540907	-	TVN0076	-	hypothetical protein
77	 43.06	0	76358..77128	-	256	13540908	-	TVN0077	-	hypothetical protein
78	 39.19	0	77159..78166	-	335	13540909	-	TVN0078	-	histidinol-phosphate aminotransferase
79	 40.32	0	78297..79184	+	295	13540910	-	TVN0079	-	hypothetical protein
80	 40.00	0	79186..79590	+	134	13540911	-	TVN0080	-	hypothetical protein
81	 42.78	0	79558..80637	-	359	13540912	-	TVN0081	-	nucleoside-diphosphate-sugar pyrophosphorylase
82	 38.16	0	80863..81816	-	317	13540913	-	TVN0082	-	hypothetical protein
83	 43.57	0	81827..83194	-	455	13540914	-	TVN0083	-	cytochrome bd-type quinol oxidase, subunit 1
84	 42.23	0	83526..84143	+	205	13540915	-	TVN0084	-	transcription activator
85	 42.30	0	84357..84869	-	170	13540916	-	TVN0085	-	hypothetical protein
86	 40.92	0	85061..85666	+	201	13540917	-	TVN0086	-	alpha/beta superfamily hydrolase
87	 40.82	0	85663..86076	+	137	13540918	-	TVN0087	-	molybdopterin converting factor, large subunit
88	 44.09	0	89391..90245	-	284	13540919	-	TVN0088	-	ATPase involved in chromosome partitioning
89	 43.89	0	90326..91936	-	536	13540920	-	TVN0089	-	formyltetrahydrofolate synthetase
90	 40.81	0	91933..92547	-	204	13540921	-	TVN0090	-	formiminotetrahydrofolate cyclodeaminase
91	 42.02	0	92631..93539	-	302	13540922	-	TVN0091	-	glutamate formiminotransferase
92	 42.40	0	93749..96052	+	767	13540923	-	TVN0092	-	ribonucleotide-diphosphate reductase subunit alpha
93	 39.53	0	96070..96843	-	257	13540924	-	TVN0093	-	metal-dependent hydrolase
94	 42.10	0	97142..98920	-	592	13540925	-	TVN0094	-	chloride channel protein
95	 38.39	0	99129..100097	-	322	13540926	-	TVN0095	-	cell wall biosynthesis glycosyltransferase
96	 36.93	-1	100132..100770	-	212	13540927	-	TVN0096	-	2-phosphosulfolactate phosphatase
97	 42.66	0	100811..101839	-	342	13540928	-	TVN0097	-	Kef-type K+ transporter NAD-binding component
98	 41.99	0	102084..102626	+	180	13540929	-	TVN0098	-	hypothetical protein
99	 45.31	+1	102621..103931	-	436	13540930	-	TVN0099	-	dihydrolipoamide dehydrogenase
100	 43.84	0	103933..105141	-	402	13540931	-	TVN0100	-	branched-chain alpha-keto acid dehydrogenase subunit E2
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.