IslandPath Analysis: Rhodobacter sphaeroides ATCC 17029



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.89   STD DEV: 3.66
Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence - 1..3147721
2973 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 71.24	0	36..1346	+	436	126460779	-	Rsph17029_0001	-	FliI/YscN family ATPase
2	 73.15	+1	1350..1673	-	107	126460780	-	Rsph17029_0002	-	hypothetical protein
3	 67.38	0	1663..1941	-	92	126460781	-	Rsph17029_0003	-	putative chemotactic signal-response protein CheL
4	 69.59	0	2045..4264	+	739	126460782	-	Rsph17029_0004	-	hypothetical protein
5	 67.71	0	4274..4942	+	222	126460783	flgD	Rsph17029_0005	-	flagellar basal body rod modification protein
6	 67.84	0	4937..6466	-	509	126460784	-	Rsph17029_0006	-	2-polyprenylphenol 6-hydroxylase
7	 63.21	-1	6468..7220	-	250	126460785	-	Rsph17029_0007	-	ubiquinone/menaquinone biosynthesis methyltransferases
8	 70.89	0	7314..8165	+	283	126460786	-	Rsph17029_0008	-	formamidopyrimidine-DNA glycosylase
9	 65.25	0	8226..9002	+	258	126460787	-	Rsph17029_0009	-	enoyl-CoA hydratase/isomerase
10	 70.61	0	9113..9391	+	92	126460788	rpsT	Rsph17029_0010	-	30S ribosomal protein S20
11	 66.30	0	9930..11297	+	455	126460789	dnaA	Rsph17029_0011	-	chromosomal replication initiation protein
12	 66.93	0	11415..12533	+	372	126460790	-	Rsph17029_0012	-	DNA polymerase III subunit beta
13	 71.52	0	12601..13692	+	363	126460791	recF	Rsph17029_0013	-	recombination protein F
14	 71.16	0	13689..14111	+	140	126460792	-	Rsph17029_0014	-	glyoxalase/bleomycin resistance protein/dioxygenase
15	 67.61	0	14203..16638	+	811	126460793	gyrB	Rsph17029_0015	-	DNA gyrase subunit B
16	 69.22	0	16595..17884	-	429	126460794	-	Rsph17029_0016	-	hypothetical protein
17	 67.50	0	17974..19050	+	358	126460795	-	Rsph17029_0017	-	AFG1 family ATPase
18	 69.98	0	19254..20129	-	291	126460796	-	Rsph17029_0018	-	phosphoserine phosphatase SerB
19	 68.13	0	20269..21426	+	385	126460797	-	Rsph17029_0019	-	phosphoserine aminotransferase
20	 65.29	0	21507..23102	+	531	126460798	-	Rsph17029_0020	-	D-3-phosphoglycerate dehydrogenase
21	 70.08	0	23199..23930	+	243	126460799	-	Rsph17029_0021	-	metallophosphoesterase
22	 72.73	+1	23980..25182	+	400	126460800	-	Rsph17029_0022	-	beta-ketothiolase
23	 74.62	+1	25192..27216	-	674	126460801	-	Rsph17029_0023	-	penicillin-binding protein 1C
24	 72.07	0	27213..32639	-	1808	126460802	-	Rsph17029_0024	-	alpha-2-macroglobulin domain-containing protein
25	 69.57	0	32793..35342	+	849	126460803	-	Rsph17029_0025	-	histidine kinase
26	 71.45	0	35496..36269	-	257	126460804	-	Rsph17029_0026	-	hypothetical protein
27	 71.80	0	36269..38314	-	681	126460805	-	Rsph17029_0027	-	ATP-dependent DNA helicase RecQ
28	 58.76	-2	38372..38662	-	96	126460806	-	Rsph17029_0028	-	protein of unknown function YGGT
29	 71.40	0	38791..39318	+	175	126460807	-	Rsph17029_0029	-	hypothetical protein
30	 71.26	0	39413..40783	+	456	126460808	-	Rsph17029_0030	-	major facilitator transporter
31	 70.51	0	40780..41664	+	294	126460809	mepA	Rsph17029_0031	-	penicillin-insensitive murein endopeptidase
32	 71.38	0	41637..42527	+	296	126460810	-	Rsph17029_0032	-	hypothetical protein
33	 67.46	0	42609..43235	+	208	126460811	-	Rsph17029_0033	-	hypothetical protein
34	 72.07	0	43515..43940	+	141	126460812	-	Rsph17029_0034	-	hypothetical protein
35	 65.97	0	43949..45241	-	430	126460813	-	Rsph17029_0035	-	nicotinate phosphoribosyltransferase
36	 70.63	0	45243..45848	-	201	126460814	-	Rsph17029_0036	-	nicotinamidase
37	 69.60	0	46041..46823	+	260	126460815	-	Rsph17029_0037	-	short-chain dehydrogenase/reductase SDR
38	 74.89	+1	46820..47743	+	307	126460816	-	Rsph17029_0038	-	2-keto-3-deoxy-galactonokinase
39	 67.97	0	47701..49311	-	536	126460817	-	Rsph17029_0039	-	alpha amylase, catalytic region
40	 67.72	0	49785..51023	+	412	126460818	-	Rsph17029_0040	-	major facilitator transporter
41	 71.87	0	51116..52288	+	390	126460819	-	Rsph17029_0041	-	major facilitator transporter
42	 73.62	+1	52337..53371	+	344	126460820	-	Rsph17029_0042	-	glycosyl transferase, group 1
43	 71.93	0	53368..53994	+	208	126460821	-	Rsph17029_0043	-	hypothetical protein
44	 63.93	-1	54123..55145	+	340	126460822	-	Rsph17029_0044	-	aspartate-semialdehyde dehydrogenase
45	 66.36	0	55230..55874	-	214	126460823	-	Rsph17029_0045	-	carbonate dehydratase
46	 66.93	0	56013..56396	+	127	126460824	-	Rsph17029_0046	-	hypothetical protein
47	 72.58	+1	56467..57852	+	461	126460825	-	Rsph17029_0047	-	leucyl aminopeptidase
48	 69.50	0	57852..58664	+	270	126460826	-	Rsph17029_0048	-	NLP/P60 protein
49	 73.05	+1	58771..59991	-	406	126460827	-	Rsph17029_0049	-	hypothetical protein
50	 67.60	0	60006..61184	-	392	126460828	-	Rsph17029_0050	-	radical SAM protein
51	 68.17	0	61323..61853	-	176	126460829	-	Rsph17029_0051	-	hypothetical protein
52	 72.22	0	62020..63009	+	329	126460830	-	Rsph17029_0052	-	L-asparaginase II
53	 72.26	0	63025..63864	-	279	126460831	-	Rsph17029_0053	-	NAD-dependent epimerase/dehydratase
54	 67.14	0	63999..65477	+	492	126460832	-	Rsph17029_0054	-	AMP nucleosidase
55	 67.01	0	65606..65893	+	95	126460833	-	Rsph17029_0055	-	histone family protein DNA-binding protein
56	 71.66	0	65963..66844	+	293	126460834	-	Rsph17029_0056	-	hypothetical protein
57	 70.94	0	66841..67941	-	366	126460835	-	Rsph17029_0057	-	chorismate synthase
58	 69.11	0	68188..69171	+	327	126460836	tbpA	Rsph17029_0058	-	thiamine transporter substrate binding subunit
59	 73.86	+1	69147..70661	+	504	126460837	thiP	Rsph17029_0059	-	thiamine transporter membrane protein
60	 74.43	+1	70648..71343	+	231	126460838	-	Rsph17029_0060	-	ABC transporter related
61	 67.25	0	71393..72250	-	285	126460839	-	Rsph17029_0061	-	cytochrome c1
62	 63.60	-1	72268..73605	-	445	126460840	-	Rsph17029_0062	-	cytochrome b/b6 domain-containing protein
63	 67.38	0	73616..74179	-	187	126460841	-	Rsph17029_0063	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
64	 70.61	0	74685..75293	-	202	126460842	-	Rsph17029_0064	-	glutathione S-transferase
65	 76.87	+2	75298..75591	-	97	126460843	-	Rsph17029_0065	-	hypothetical protein
66	 63.49	-1	75722..75847	-	41	126460844	-	Rsph17029_0066	-	ribosomal protein L36
67	 70.15	0	76144..77004	+	286	126460845	-	Rsph17029_0067	-	N-formylglutamate amidohydrolase
68	 71.45	0	77008..78261	-	417	126460846	-	Rsph17029_0068	-	DNA polymerase IV
69	 67.35	0	78388..79269	+	293	126460847	-	Rsph17029_0069	-	band 7 protein
70	 66.67	0	79266..79535	+	89	126460848	-	Rsph17029_0070	-	hypothetical protein
71	 73.81	+1	79844..80179	+	111	126460849	-	Rsph17029_0071	-	hypothetical protein
72	 72.10	0	80184..80882	-	232	126460850	-	Rsph17029_0072	-	orotidine 5'-phosphate decarboxylase
73	 72.97	+1	80986..81873	+	295	126460851	-	Rsph17029_0073	-	ROK family protein
74	 70.94	0	81887..82120	-	77	126460852	-	Rsph17029_0074	-	hypothetical protein
75	 68.24	0	82423..85035	+	870	126460853	-	Rsph17029_0075	-	ATPase
76	 67.30	0	85096..85566	-	156	126460854	-	Rsph17029_0076	-	beta-Ig-H3/fasciclin
77	 66.11	0	85763..86668	+	301	126460855	-	Rsph17029_0077	-	putative sulfite oxidase subunit YedY
78	 69.31	0	86669..87274	+	201	126460856	-	Rsph17029_0078	-	putative sulfite oxidase subunit YedZ
79	 54.43	-2	87359..87685	-	108	126460857	-	Rsph17029_0079	-	hypothetical protein
80	 65.93	0	93108..93380	-	90	126460858	-	Rsph17029_0080	-	hypothetical protein
81	 63.66	-1	93400..94098	-	232	126460859	-	Rsph17029_0081	-	hypothetical protein
82	 67.07	0	94118..95098	-	326	126460860	-	Rsph17029_0082	-	alcohol dehydrogenase
83	 64.39	-1	95114..95773	-	219	126460861	-	Rsph17029_0083	-	TetR family transcriptional regulator
84	 67.94	0	96282..96911	+	209	126460862	-	Rsph17029_0084	-	ABC transporter related
85	 70.86	0	96933..97337	-	134	126460863	-	Rsph17029_0085	-	hypothetical protein
86	 69.92	0	97368..98135	-	255	126460864	-	Rsph17029_0086	-	ABC transporter related
87	 75.01	+1	98132..100108	-	658	126460865	-	Rsph17029_0087	-	iron-hydroxamate transporter permease subunit
88	 73.78	+1	100105..101004	-	299	126460866	-	Rsph17029_0088	-	periplasmic binding protein
89	 66.76	0	100998..103097	-	699	126460867	-	Rsph17029_0089	-	TonB-dependent siderophore receptor
90	 69.93	0	103424..104557	+	377	126460868	-	Rsph17029_0090	-	ROK family protein
91	 65.08	-1	104675..105931	+	418	126460869	-	Rsph17029_0091	-	extracellular solute-binding protein
92	 63.30	-1	106020..106910	+	296	126460870	-	Rsph17029_0092	-	binding-protein-dependent transport systems inner membrane component
93	 63.72	-1	106907..107755	+	282	126460871	-	Rsph17029_0093	-	binding-protein-dependent transport systems inner membrane component
94	 67.57	0	107775..108878	+	367	126460872	-	Rsph17029_0094	-	ABC transporter related
95	 74.31	+1	108875..109816	+	313	126460873	-	Rsph17029_0095	-	ATPase, BadF/BadG/BcrA/BcrD type
96	 70.45	0	109843..110847	+	334	126460874	-	Rsph17029_0096	-	sugar isomerase (SIS)
97	 71.47	0	110902..111921	+	339	126460875	-	Rsph17029_0097	-	threonine aldolase
98	 69.00	0	112106..112876	-	256	126460876	-	Rsph17029_0098	-	DeoR family transcriptional regulator
99	 69.31	0	113149..113943	+	264	126460877	-	Rsph17029_0099	-	inositol monophosphatase
100	 65.33	0	114016..115590	+	524	126460878	-	Rsph17029_0100	-	extracellular solute-binding protein
68.89	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.